PRDX6
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Also known as AOP2KIAA01061-CysNSGPxPRXaiPLA2MGC46173p29
Summary
PRDX6 (peroxiredoxin 6, HGNC:16753) is a protein-coding gene on chromosome 1q25.1, encoding Peroxiredoxin-6 (P30041). Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively.
The protein encoded by this gene is a member of the thiol-specific antioxidant protein family. This protein is a bifunctional enzyme with two distinct active sites. It is involved in redox regulation of the cell; it can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. It may play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.
Source: NCBI Gene 9588 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Charcot-Marie-Tooth disease type 4 (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 1,489 total — 51 pathogenic, 21 likely-pathogenic
- Phenotypes (HPO): 47
- Druggable target: yes
- MANE Select transcript:
NM_004905
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16753 |
| Approved symbol | PRDX6 |
| Name | peroxiredoxin 6 |
| Location | 1q25.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | AOP2, KIAA0106, 1-Cys, NSGPx, PRX, aiPLA2, MGC46173, p29 |
| Ensembl gene | ENSG00000117592 |
| Ensembl biotype | protein_coding |
| OMIM | 602316 |
| Entrez | 9588 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000340385, ENST00000460950, ENST00000470017, ENST00000867927, ENST00000867928, ENST00000922551, ENST00000922552, ENST00000922553, ENST00000922554, ENST00000922555
RefSeq mRNA: 1 — MANE Select: NM_004905
NM_004905
CCDS: CCDS1307
Canonical transcript exons
ENST00000340385 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000814648 | 173481326 | 173481482 |
| ENSE00001161142 | 173487735 | 173488815 |
| ENSE00001887950 | 173477335 | 173477492 |
| ENSE00003615087 | 173485361 | 173485507 |
| ENSE00003682006 | 173486255 | 173486401 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.53.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 408.6727 / max 1919.1845, expressed in 1827 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 6723 | 296.6759 | 1827 |
| 6725 | 51.1588 | 1815 |
| 6722 | 45.9806 | 1818 |
| 6724 | 11.7842 | 1780 |
| 6728 | 0.7891 | 405 |
| 6726 | 0.7848 | 435 |
| 6721 | 0.6267 | 132 |
| 6729 | 0.5753 | 308 |
| 6730 | 0.2975 | 138 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus epididymis | UBERON:0004359 | 99.53 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.49 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.47 | gold quality |
| amniotic fluid | UBERON:0000173 | 99.42 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.39 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 99.39 | gold quality |
| peritoneum | UBERON:0002358 | 99.38 | gold quality |
| omental fat pad | UBERON:0010414 | 99.38 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.36 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.35 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.35 | gold quality |
| muscle of leg | UBERON:0001383 | 99.34 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.33 | gold quality |
| adipose tissue | UBERON:0001013 | 99.32 | gold quality |
| rectum | UBERON:0001052 | 99.32 | gold quality |
| left uterine tube | UBERON:0001303 | 99.30 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.29 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.29 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 99.28 | gold quality |
| lower esophagus | UBERON:0013473 | 99.27 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.27 | gold quality |
| caput epididymis | UBERON:0004358 | 99.26 | gold quality |
| connective tissue | UBERON:0002384 | 99.25 | gold quality |
| oral cavity | UBERON:0000167 | 99.24 | gold quality |
| right lobe of liver | UBERON:0001114 | 99.24 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.23 | gold quality |
| muscle organ | UBERON:0001630 | 99.23 | gold quality |
| deltoid | UBERON:0001476 | 99.21 | gold quality |
| pericardium | UBERON:0002407 | 99.20 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.20 | gold quality |
Single-cell (SCXA)
Detected in 18 experiment(s), a significant marker in 16.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-134144 | yes | 2113.96 |
| E-HCAD-4 | yes | 63.71 |
| E-HCAD-5 | yes | 42.28 |
| E-MTAB-10553 | yes | 33.93 |
| E-GEOD-125970 | yes | 31.69 |
| E-HCAD-10 | yes | 31.21 |
| E-GEOD-137537 | yes | 31.09 |
| E-CURD-88 | yes | 24.24 |
| E-MTAB-7316 | yes | 23.21 |
| E-CURD-122 | yes | 19.66 |
| E-MTAB-8142 | yes | 16.29 |
| E-MTAB-8410 | yes | 14.31 |
| E-GEOD-93593 | yes | 14.26 |
| E-MTAB-10042 | yes | 8.38 |
| E-MTAB-9801 | yes | 6.42 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFE2L2, NFE2L3, NFKB, PAX5, POU1F1, SP1, SPI1, TP53
miRNA regulators (miRDB)
78 targeting PRDX6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
Literature-anchored findings (GeneRIF, showing 40)
- Data show that p29 is a novel protein that associates with p67, has peroxiredoxin activity, and has a potential role in protecting the NADPH oxidase by inactivating H(2)O(2) or altering signaling pathways affected by H(2)O(2) [neutrophil protein p29 ] (PMID:12121978)
- overexpression protects cells against phospholipid peroxidation-mediated membrane damage [1-cys peroxiredoxin] (PMID:12193653)
- The significant increase in peroxiredoxin 6 level in frontal cortex of patients with Pick’s disease is useful in discriminating it from Down syndrome/Alzheimer’s disease. (PMID:12650976)
- AOP2 protects hyperglycemia-induced lens epithelial cell apoptosis; this molecule may have the potential to prevent hyperglycemia-mediated complications in diabetes (PMID:14751239)
- Prdx6 is an important antioxidant enzyme and has a major role in lung phospholipid metabolism [review] (PMID:15890616)
- Protects HeLa cells from H(2)O(2)-induced cell death. (PMID:15941719)
- Saitohin interacts with peroxiredoxin 6, a unique member of that family that is bifunctional and the levels of which increase in Pick disease. (PMID:16186110)
- SP-A and Prdx6 directly interact, which provides a mechanism for regulation of the PLA(2) activity of Prdx6 by SP-A (PMID:16330552)
- overexpression of peroxiredoxin 6 is associated with oligodendroglioma (PMID:17653765)
- Overexpression of peroxiredoxin 6 leads to a more invasive phenotype and metastatic potential in human breast cancer, at least in part, through regulation of the levels of uPAR, Ets-1, MMP-9, RhoC and TIMP-2 expression. (PMID:17980029)
- PRDX6 is required for blood vessel integrity in wounded skin. (PMID:18025307)
- In brain tissue of patients with Alzheimer’s disease , many blood vessels exhibited peroxiredoxin 6 staining that appeared to be due to the astrocytic foot processes. (PMID:18386021)
- two potential interaction partners of Prx6: the calcium-activated cysteine endopeptidase calpain and the p50RhoGAP protein of the family of Sec14-like proteins. (PMID:18619034)
- H2O2-mediated hyperoxidation of Prdx6 induces cell cycle arrest at the G2/M transition through up-regulation of iPLA2 activity. (PMID:18826942)
- expression is upregulated during response to oxidative stress (PMID:18973804)
- The MAPKs can mediate phosphorylation of Prdx6 at Thr-177 with a consequent marked increase in its aiPLA(2) activity. (PMID:19140803)
- Using shotgun mass spectrometry, we found this protein differentially expressed in the dorsolateral prefrontal cortex from patients with schizophrenia. (PMID:19165527)
- Prdx6 binds to reduced phospholipid at acidic pH but at cytosolic pH binds only phospholipid that is oxidized compatible with a role for Prdx6 in the repair of peroxidized cell membranes (PMID:19236840)
- This protein has been found differentially expressed in the Wernicke’s Area from patients with schizophrenia. (PMID:19405953)
- Overexpression of peroxiredoxin I and is associated with breast carcinoma. (PMID:19566940)
- PRDX6 attenuates oxidative stress- and TGFbeta-induced abnormalities of human trabecular meshwork cells. (PMID:19572226)
- The localization of Prdx6 in acidic organelles and consequent PLA2 activity depend on a novel 10-aa peptide located at positions 31-40 of the protein. (PMID:19700648)
- Extrinsic PRDX6 prevents UV-triggered cell death and abnormal protein expression in PRDX6-deficient lens epitheial cells. (PMID:19889963)
- promotes lung cancer cell invasion by inducing urokinase-type plasminogen activator via p38 kinase, phosphoinositide 3-kinase, and Ak (PMID:19937138)
- This study is the first to define the functions of the enzymatic activities of PRDX6 in metastasis and to show the involvement of arachidonic acid in PRDX6 action in intact cells. (PMID:20354123)
- It could be detected that PRDX6 is associated with tumorigenesis in tonge squamous cell carcinoma. (PMID:20796224)
- Prx6 modulates TRAIL signaling as a negative regulator of caspase-8 and caspase-10 in death-inducing signaling complex formation of TRAIL-resistant metastatic cancer cells. (PMID:20829884)
- The antioxidant Prdx 6 protects ovarian cancer cells against cisplatin-induced apoptosis via inactivation of the caspase signaling pathway. (PMID:21166495)
- Results suggest that ERK and p38 MAPK regulate subcellular localization of Prdx6 by activation of 14-3-3epsilon as a chaperone protein, resulting in its translocation to acidic organelles. (PMID:21346153)
- Results provide new insights into the distinct roles of bifunctional Prdx6 with peroxidase and PLA(2) activities in oxidative stress-induced and TNF-induced apoptosis, respectively. (PMID:21415860)
- Study revealed novel SNPs within the PRDX6 gene and its 5’ and 3’ flanking regions via direct sequencing. (PMID:21627785)
- Data suggest that Prdx6 serves an additional biochemical or structural role in supporting optimal NADPH oxidase activity. (PMID:22178385)
- Data suggest that SNPs of peroxiredoxin 1, 2 and 6 are not associated with esophageal cancer. (PMID:22215146)
- expression and function of Prdx1 and Prdx6 in MCF-7 and noncancerous MCF-10A cell lines; found elevated Prdx1 expression in MCF-7 cells and comparable expression of Prdx6; data suggest synergistic role for Prdx1 and Prdx6 in MCF-10A cells (PMID:22236188)
- decreased levels, combined with higher thiol oxidation (and probable inhibition) of PRDXs (particularly PRDX6), are noted when human sperm function is altered. (PMID:22492841)
- a change in the conformation of Prdx6 upon its phosphorylation is the basis for enhancement of PLA(2) enzymatic activity (PMID:22663767)
- (2) activity of Prdx6-PLA(2) in intact cells mediates its ability to enhance phox activity in response to fMLF (PMID:22678913)
- The protein and mRNA expressions of Prx1 and Prx6 increased significantly in the order of normal brain tissue, grade II astrocytoma, grade III astrocytoma and grade IV astrocytoma. (PMID:22985558)
- Drug resistance formation was accompanied by a significant increase in the expression of PRDX1, PRDX2, PRDX3, PRDX6 genes in all cancer cell strains, which confirms the importance of redox-dependent mechanisms into development of cisplatin resistance. (PMID:23113308)
- The level of Prx6 protein is lower in gastric cancer tissues than in normal para-cancer tissue. Prx6 expression is significantly correlated with the differentiation degree of GC. (PMID:23158669)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Prdx6 | ENSMUSG00000026701 |
| mus_musculus | Prdx6b | ENSMUSG00000050114 |
| rattus_norvegicus | Prdx6 | ENSRNOG00000081976 |
| drosophila_melanogaster | Prx6c | FBGN0033518 |
| drosophila_melanogaster | Prx6b | FBGN0033520 |
| drosophila_melanogaster | CG12896 | FBGN0033521 |
Paralogs (4): PRDX1 (ENSG00000117450), PRDX4 (ENSG00000123131), PRDX3 (ENSG00000165672), PRDX2 (ENSG00000167815)
Protein
Protein identifiers
Peroxiredoxin-6 — P30041 (reviewed: P30041)
Alternative names: 1-Cys peroxiredoxin, 24 kDa protein, Acidic calcium-independent phospholipase A2, Antioxidant protein 2, Glutathione-dependent peroxiredoxin, Liver 2D page spot 40, Lysophosphatidylcholine acyltransferase 5, Non-selenium glutathione peroxidase, Red blood cells page spot 12
All UniProt accessions (2): P30041, V9HWC7
UniProt curated annotations — full annotation on UniProt →
Function. Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. Also has phospholipase activity, can therefore either reduce the oxidized sn-2 fatty acyl group of phospholipids (peroxidase activity) or hydrolyze the sn-2 ester bond of phospholipids (phospholipase activity). These activities are dependent on binding to phospholipids at acidic pH and to oxidized phospholipds at cytosolic pH. Plays a role in cell protection against oxidative stress by detoxifying peroxides and in phospholipid homeostasis. Exhibits acyl-CoA-dependent lysophospholipid acyltransferase which mediates the conversion of lysophosphatidylcholine (1-acyl-sn-glycero-3-phosphocholine or LPC) into phosphatidylcholine (1,2-diacyl-sn-glycero-3-phosphocholine or PC). Shows a clear preference for LPC as the lysophospholipid and for palmitoyl CoA as the fatty acyl substrate.
Subunit / interactions. Homodimer. Interacts with GSTP1; mediates PRDX6 glutathionylation and regeneration. Interacts with APEX1. Interacts with STH. May interact with FAM168B. May interact with HTR2A.
Subcellular location. Cytoplasm. Lysosome.
Post-translational modifications. Irreversibly inactivated by overoxidation of Cys-47 to sulfinic acid (Cys-SO(2)H) and sulfonic acid (Cys-SO(3)H) forms upon oxidative stress. Phosphorylation at Thr-177 by MAP kinases increases the phospholipase activity of the enzyme. The phosphorylated form exhibits a greater lysophosphatidylcholine acyltransferase activity compared to the non-phosphorylated form.
Activity regulation. MJ33 or lithium;[(2R)-1-hexadecoxy-3-(2,2,2-trifluoroethoxy)propan-2-yl] methyl phosphate inhibits its phospholipase A2 activity. CI-976 or 2,2-Dimethyl-N-(2,4,6-trimethoxyphenyl)dodecanamide inhibits its lysophosphatidylcholine acyltransferase activity.
Miscellaneous. The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule. C(P) is reactivated by glutathionylation mediated by glutathione S-transferase Pi, followed by spontaneous reduction of the enzyme with glutathione.
Similarity. Belongs to the peroxiredoxin family. Prx6 subfamily.
RefSeq proteins (1): NP_004896* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000866 | AhpC/TSA | Domain |
| IPR013766 | Thioredoxin_domain | Domain |
| IPR019479 | Peroxiredoxin_C | Domain |
| IPR024706 | Peroxiredoxin_AhpC-typ | Family |
| IPR036249 | Thioredoxin-like_sf | Homologous_superfamily |
| IPR045020 | PRX_1cys | Family |
Pfam: PF00578, PF10417
Enzyme classification (BRENDA):
- EC 1.11.1.27 — glutathione-dependent peroxiredoxin (BRENDA: 12 organisms, 26 substrates, 4 inhibitors, 9 Km, 0 kcat entries)
- EC 2.3.1.23 — 1-acylglycerophosphocholine O-acyltransferase (BRENDA: 25 organisms, 283 substrates, 101 inhibitors, 64 Km, 2 kcat entries)
- EC 3.1.1.4 — phospholipase A2 (BRENDA: 129 organisms, 452 substrates, 710 inhibitors, 90 Km, 14 kcat entries)
Substrate kinetics (BRENDA)
83 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| OLEOYL-COA | 0.0004–0.152 | 15 |
| PHOSPHATIDYLCHOLINE | 0.05–17 | 12 |
| 1-ACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 0.0017–0.107 | 9 |
| 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 0.94–13.85 | 7 |
| ARACHIDONOYL-COA | 0.0032–0.7156 | 6 |
| PHOSPHATIDYLETHANOLAMINE | 0.02–10.5 | 5 |
| PALMITOYL-COA | 0.0027–0.0413 | 4 |
| STEAROYL-COA | 0.0021–0.232 | 4 |
| 1-PALMITOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 0.0018–0.0081 | 3 |
| 1,2-DIHEPTANOYL-SN-GLYCERO-3-PHOPHORYLCHOLINE | 1.12–5.13 | 3 |
| 1,2-DIHEPTANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 3–3.92 | 3 |
| 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 0.12–3.2 | 3 |
| H2O2 | 0.0023–0.18 | 2 |
| TERT-BUTYL HYDROPEROXIDE | 0.142–0.2088 | 2 |
| 1-PALMITOYL-LYSOPHOSPHATIDYLCHOLINE | 0.0023–0.7219 | 2 |
Catalyzed reactions (Rhea), 5 shown:
- a 1-acyl-sn-glycero-3-phosphocholine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phosphocholine + CoA (RHEA:12937)
- a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+) (RHEA:15801)
- 1-hexadecanoyl-sn-glycero-3-phosphocholine + hexadecanoyl-CoA = 1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + CoA (RHEA:35983)
- 1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + H2O = 1-hexadecanoyl-sn-glycero-3-phosphocholine + hexadecanoate + H(+) (RHEA:41223)
- a hydroperoxide + 2 glutathione = an alcohol + glutathione disulfide + H2O (RHEA:62632)
UniProt features (36 total): strand 14, modified residue 6, helix 6, mutagenesis site 2, active site 2, initiator methionine 1, chain 1, domain 1, turn 1, region of interest 1, site 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1PRX | X-RAY DIFFRACTION | 2 |
| 5B6M | X-RAY DIFFRACTION | 2.5 |
| 5B6N | X-RAY DIFFRACTION | 2.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P30041-F1 | 96.75 | 0.99 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 47 (cysteine sulfenic acid (-soh) intermediate; for peroxidase activity); 140 (for phospholipase activity); 32 (important for phospholipase activity)
Post-translational modifications (6): 177, 209, 209, 44, 63, 89
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 32 | loss of phospholipase activity, but no effect on peroxidase activity. |
| 47 | loss of peroxidase activity, but no effect on phospholipase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-3299685 | Detoxification of Reactive Oxygen Species |
| R-HSA-6798695 | Neutrophil degranulation |
MSigDB gene sets: 537 (showing top):
MODULE_172, RNGTGGGC_UNKNOWN, MODULE_93, GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, MODY_HIPPOCAMPUS_POSTNATAL, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_RNA_SPLICING, GOCC_SECRETORY_GRANULE, GOBP_POSITIVE_REGULATION_OF_MRNA_PROCESSING, MODULE_151, GOBP_HYDROGEN_PEROXIDE_CATABOLIC_PROCESS, GOBP_PLASMA_MEMBRANE_ORGANIZATION, GOBP_GLIAL_CELL_DEVELOPMENT, HSIAO_HOUSEKEEPING_GENES, GOBP_NEUROGENESIS
GO Biological Process (8): response to oxidative stress (GO:0006979), hydrogen peroxide catabolic process (GO:0042744), cell redox homeostasis (GO:0045454), glycerophospholipid catabolic process (GO:0046475), positive regulation of mRNA splicing, via spliceosome (GO:0048026), cellular oxidant detoxification (GO:0098869), lipid metabolic process (GO:0006629), lipid catabolic process (GO:0016042)
GO Molecular Function (15): peroxidase activity (GO:0004601), glutathione peroxidase activity (GO:0004602), A2-type glycerophospholipase activity (GO:0004623), ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), cadherin binding (GO:0045296), 1-acylglycerophosphocholine O-acyltransferase activity (GO:0047184), obsolete calcium-independent phospholipase A2 activity (GO:0047499), peroxiredoxin activity (GO:0051920), catalytic activity (GO:0003824), protein binding (GO:0005515), antioxidant activity (GO:0016209), oxidoreductase activity (GO:0016491), transferase activity (GO:0016740), hydrolase activity (GO:0016787)
GO Cellular Component (10): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), azurophil granule lumen (GO:0035578), perinuclear region of cytoplasm (GO:0048471), extracellular exosome (GO:0070062), lysosome (GO:0005764)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Cellular response to chemical stress | 1 |
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| catalytic activity | 3 |
| catabolic process | 2 |
| peroxidase activity | 2 |
| molecular_function | 2 |
| cytoplasm | 2 |
| response to stress | 1 |
| hydrogen peroxide metabolic process | 1 |
| cellular homeostasis | 1 |
| glycerophospholipid metabolic process | 1 |
| phospholipid catabolic process | 1 |
| glycerolipid catabolic process | 1 |
| mRNA splicing, via spliceosome | 1 |
| positive regulation of RNA splicing | 1 |
| regulation of mRNA splicing, via spliceosome | 1 |
| positive regulation of mRNA processing | 1 |
| cellular detoxification | 1 |
| primary metabolic process | 1 |
| lipid metabolic process | 1 |
| antioxidant activity | 1 |
| oxidoreductase activity, acting on peroxide as acceptor | 1 |
| glycerophospholipase activity | 1 |
| carboxylic ester hydrolase activity | 1 |
| ubiquitin-like protein ligase binding | 1 |
| protein binding | 1 |
| cell adhesion molecule binding | 1 |
| acyltransferase activity, transferring groups other than amino-acyl groups | 1 |
| binding | 1 |
| cellular oxidant detoxification | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| vacuolar lumen | 1 |
| secretory granule lumen | 1 |
| azurophil granule | 1 |
| extracellular vesicle | 1 |
| lytic vacuole | 1 |
Protein interactions and networks
STRING
3631 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PRDX6 | TXN | P10599 | 753 |
| PRDX6 | GPX7 | Q96SL4 | 685 |
| PRDX6 | GPX8 | Q8TED1 | 682 |
| PRDX6 | PRDX5 | P30044 | 679 |
| PRDX6 | GPX2 | P18283 | 652 |
| PRDX6 | STH | Q8IWL8 | 652 |
| PRDX6 | GPX3 | P22352 | 651 |
| PRDX6 | GPX5 | O75715 | 648 |
| PRDX6 | ENO1 | P06733 | 648 |
| PRDX6 | GPX6 | P59796 | 645 |
| PRDX6 | GAPDH | P00354 | 633 |
| PRDX6 | PGK1 | P00558 | 582 |
| PRDX6 | GPX4 | P36969 | 579 |
| PRDX6 | HSPE1 | P61604 | 577 |
| PRDX6 | GSR | P00390 | 564 |
IntAct
142 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| PRDX6 | PCNA | psi-mi:“MI:0915”(physical association) | 0.570 |
| PRDX6 | PSMD8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRDX6 | ARFGAP3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NME1 | NME2P1 | psi-mi:“MI:0914”(association) | 0.530 |
| E6 | CASK | psi-mi:“MI:0914”(association) | 0.520 |
| TERF1 | PRDX6 | psi-mi:“MI:0915”(physical association) | 0.510 |
| COX15 | PRDX6 | psi-mi:“MI:0915”(physical association) | 0.500 |
| VDAC1 | PRDX6 | psi-mi:“MI:0915”(physical association) | 0.500 |
| DLD | PRDX6 | psi-mi:“MI:0915”(physical association) | 0.500 |
| CFTR | CNOT1 | psi-mi:“MI:0914”(association) | 0.480 |
| Ncf2 | PRDX6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| Ncf2 | psi-mi:“MI:1146”(phospholipase reaction) | 0.440 | |
| PRDX6 | psi-mi:“MI:1146”(phospholipase reaction) | 0.440 | |
| DNM1L | PRDX6 | psi-mi:“MI:0403”(colocalization) | 0.430 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (333): PRDX6 (Affinity Capture-MS), PRDX6 (Reconstituted Complex), PRDX6 (Affinity Capture-Western), CASP10 (Reconstituted Complex), CASP8 (Reconstituted Complex), CASP10 (Affinity Capture-Western), CASP8 (Affinity Capture-Western), PRDX6 (Two-hybrid), PRDX6 (Affinity Capture-Western), CASP10 (PCA), CASP8 (PCA), PRDX6 (Affinity Capture-MS), AKR1B1 (Co-fractionation), ASS1 (Co-fractionation), CD2AP (Co-fractionation)
ESM2 similar proteins: A9PCL4, G0S1P8, O08709, O14313, O22711, O35244, O43099, O69777, O77834, P0A251, P0A252, P0A862, P0A863, P0A864, P0A865, P0A866, P0AE08, P0AE09, P0AE10, P0AE11, P30041, P30044, P32119, P35704, P44758, P52572, P57668, P57880, P73728, P99029, Q2KJE4, Q2PFL9, Q5ASN8, Q5R7E0, Q61171, Q6W8Q2, Q8K3U7, Q8KED5, Q8XVP0, Q8Z7A8
Diamond homologs: A0A0K3AUJ9, A0A2Z5VKM8, A2BJD9, A2SZW8, A3DKL1, A4FWZ9, A5IIX7, A6UPH7, A8A9P0, O04005, O08709, O08807, O17433, O24364, O26262, O29969, O33665, O35244, O58966, O67024, O77834, P0C5C8, P0C5C9, P0C5D0, P0C5D1, P0CB50, P19476, P20108, P23161, P30041, P30048, P32119, P34227, P35700, P35704, P48822, P51272, P52570, P52571, P52572
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MAPK1 | up-regulates | PRDX6 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1489 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 51 |
| Likely pathogenic | 21 |
| Uncertain significance | 848 |
| Likely benign | 408 |
| Benign | 24 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1075484 | NM_181882.3(PRX):c.1171del (p.Leu391fs) | Pathogenic |
| 1075829 | NM_181882.3(PRX):c.205C>T (p.Arg69Ter) | Pathogenic |
| 1323502 | NM_181882.3(PRX):c.2602del (p.Gln868fs) | Pathogenic |
| 1324966 | NM_181882.3(PRX):c.2581del (p.Leu861fs) | Pathogenic |
| 1385857 | NM_181882.3(PRX):c.2815_2816del (p.Ser939fs) | Pathogenic |
| 1392880 | NM_181882.3(PRX):c.3099_3100del (p.Glu1034fs) | Pathogenic |
| 1423233 | NM_181882.3(PRX):c.2050C>T (p.Gln684Ter) | Pathogenic |
| 1686102 | NM_181882.3(PRX):c.1552_1558del (p.Pro518fs) | Pathogenic |
| 1908695 | NM_181882.3(PRX):c.3054del (p.Arg1020fs) | Pathogenic |
| 2703425 | NM_181882.3(PRX):c.2362A>T (p.Lys788Ter) | Pathogenic |
| 2777990 | NM_181882.3(PRX):c.2180_2181del (p.Ile727fs) | Pathogenic |
| 2787432 | NM_181882.3(PRX):c.1552_1562delinsT (p.Pro518fs) | Pathogenic |
| 2803049 | NM_181882.3(PRX):c.3275del (p.Val1092fs) | Pathogenic |
| 2806966 | NM_181882.3(PRX):c.1657del (p.Glu553fs) | Pathogenic |
| 2823989 | NM_181882.3(PRX):c.3371C>G (p.Ser1124Ter) | Pathogenic |
| 2851365 | NM_181882.3(PRX):c.2301del (p.Leu768fs) | Pathogenic |
| 2851657 | NM_181882.3(PRX):c.1999del (p.Leu667fs) | Pathogenic |
| 3018157 | NM_181882.3(PRX):c.1001_1022del (p.Gly334fs) | Pathogenic |
| 3248510 | NC_000019.9:g.(?40913793)(40913839_?)del | Pathogenic |
| 3611669 | NM_181882.3(PRX):c.667del (p.Val223fs) | Pathogenic |
| 3655356 | NM_181882.3(PRX):c.2252C>G (p.Ser751Ter) | Pathogenic |
| 3663633 | NM_181882.3(PRX):c.3157del (p.Asp1053fs) | Pathogenic |
| 3687942 | NM_181882.3(PRX):c.1782_1783insTTCCTGAGATGAAA (p.Leu595delinsPheLeuArgTer) | Pathogenic |
| 3690156 | NM_181882.3(PRX):c.2447C>G (p.Ser816Ter) | Pathogenic |
| 433553 | NM_181882.3(PRX):c.1012del (p.Ala338fs) | Pathogenic |
| 448140 | NM_181882.3(PRX):c.3611del (p.Leu1204fs) | Pathogenic |
| 4725896 | NM_181882.3(PRX):c.1572_1650del (p.Val525fs) | Pathogenic |
| 4787 | NM_181882.3(PRX):c.2857C>T (p.Arg953Ter) | Pathogenic |
| 4791 | NM_181882.3(PRX):c.586C>T (p.Arg196Ter) | Pathogenic |
| 549686 | NM_181882.3(PRX):c.3703G>T (p.Glu1235Ter) | Pathogenic |
SpliceAI
984 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:173477488:GACTC:G | donor_gain | 1.0000 |
| 1:173477489:ACTC:A | donor_gain | 1.0000 |
| 1:173477489:ACTCG:A | donor_loss | 1.0000 |
| 1:173477490:CTC:C | donor_gain | 1.0000 |
| 1:173477491:TC:T | donor_gain | 1.0000 |
| 1:173477491:TCG:T | donor_loss | 1.0000 |
| 1:173477492:CGTA:C | donor_loss | 1.0000 |
| 1:173477493:G:GG | donor_gain | 1.0000 |
| 1:173477493:G:T | donor_loss | 1.0000 |
| 1:173477494:T:TC | donor_loss | 1.0000 |
| 1:173477495:AA:A | donor_loss | 1.0000 |
| 1:173481322:TCAG:T | acceptor_loss | 1.0000 |
| 1:173481324:A:AG | acceptor_gain | 1.0000 |
| 1:173481324:AG:A | acceptor_loss | 1.0000 |
| 1:173481324:AGAT:A | acceptor_gain | 1.0000 |
| 1:173481324:AGATG:A | acceptor_gain | 1.0000 |
| 1:173481325:G:A | acceptor_loss | 1.0000 |
| 1:173481325:G:GA | acceptor_gain | 1.0000 |
| 1:173481325:GAT:G | acceptor_gain | 1.0000 |
| 1:173481325:GATG:G | acceptor_gain | 1.0000 |
| 1:173481325:GATGG:G | acceptor_gain | 1.0000 |
| 1:173481427:T:G | donor_gain | 1.0000 |
| 1:173481480:AAGG:A | donor_loss | 1.0000 |
| 1:173481483:G:GC | donor_loss | 1.0000 |
| 1:173485355:TTTCA:T | acceptor_loss | 1.0000 |
| 1:173485357:TCA:T | acceptor_loss | 1.0000 |
| 1:173485359:A:AG | acceptor_gain | 1.0000 |
| 1:173485359:AG:A | acceptor_gain | 1.0000 |
| 1:173485360:G:GT | acceptor_gain | 1.0000 |
| 1:173485360:GG:G | acceptor_gain | 1.0000 |
AlphaMissense
1469 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:173481345:C:G | H39D | 0.999 |
| 1:173481357:T:C | F43L | 0.999 |
| 1:173481359:T:A | F43L | 0.999 |
| 1:173481359:T:G | F43L | 0.999 |
| 1:173481371:C:G | C47W | 0.999 |
| 1:173481474:T:A | W82R | 0.999 |
| 1:173481474:T:C | W82R | 0.999 |
| 1:173486316:G:A | G154D | 0.999 |
| 1:173486319:G:C | R155T | 0.999 |
| 1:173486319:G:T | R155M | 0.999 |
| 1:173486320:G:C | R155S | 0.999 |
| 1:173486320:G:T | R155S | 0.999 |
| 1:173486340:G:T | R162M | 0.999 |
| 1:173481327:T:A | W33R | 0.998 |
| 1:173481327:T:C | W33R | 0.998 |
| 1:173481347:C:A | H39Q | 0.998 |
| 1:173481347:C:G | H39Q | 0.998 |
| 1:173481369:T:C | C47R | 0.998 |
| 1:173481370:G:A | C47Y | 0.998 |
| 1:173486289:T:C | L145P | 0.998 |
| 1:173486331:A:T | E159V | 0.998 |
| 1:173486340:G:C | R162T | 0.998 |
| 1:173486379:T:A | V175D | 0.998 |
| 1:173486396:T:A | W181R | 0.998 |
| 1:173486396:T:C | W181R | 0.998 |
| 1:173487754:T:A | V189D | 0.998 |
| 1:173481346:A:G | H39R | 0.997 |
| 1:173481354:G:C | D42H | 0.997 |
| 1:173481379:A:T | E50V | 0.997 |
| 1:173481380:G:C | E50D | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000196271 (1:173482322 C>T), RS1000227542 (1:173481971 C>G,T), RS1000324588 (1:173476576 TAACA>T), RS1000541494 (1:173488966 T>C), RS1000544094 (1:173488584 A>G), RS1000666657 (1:173482247 T>C), RS1000696671 (1:173488947 A>G), RS1000710417 (1:173476233 T>C), RS1000785546 (1:173483903 C>A), RS1001606137 (1:173483843 C>T), RS1001675497 (1:173477488 G>T), RS1001717781 (1:173481132 A>G), RS1001947205 (1:173484141 GATATATATATTTATAT>G), RS1002010848 (1:173476156 T>C), RS1002023796 (1:173483273 G>T)
Disease associations
OMIM: gene MIM:602316 | disease phenotypes: MIM:614895, MIM:145900, MIM:118220, MIM:600361, MIM:617770
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease type 4 | Definitive | Autosomal recessive |
| Charcot-Marie-Tooth disease type 4F | Strong | Autosomal recessive |
| Charcot-Marie-Tooth disease type 3 | Moderate | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease type 4 | Definitive | AR |
Mondo (10): Charcot-Marie-Tooth disease type 4 (MONDO:0018995), Charcot-Marie-Tooth disease type 4F (MONDO:0013959), Charcot-Marie-Tooth disease type 3 (MONDO:0007790), Charcot-Marie-Tooth disease (MONDO:0015626), Charcot-Marie-Tooth disease type 5 (MONDO:0010877), Charcot-Marie-Tooth disease type 1 (MONDO:0019011), spinocerebellar ataxia 46 (MONDO:0033481), peripheral neuropathy (MONDO:0005244), distal hereditary motor neuropathy (MONDO:0018894), Gaucher disease (MONDO:0018150)
Orphanet (9): Charcot-Marie-Tooth disease type 4 (Orphanet:64749), Charcot-Marie-Tooth disease type 4F (Orphanet:99952), Dejerine-Sottas syndrome (Orphanet:64748), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166), Spinocerebellar ataxia type 46 (Orphanet:589522), Hereditary motor and sensory neuropathy type 5 (Orphanet:64751), Charcot-Marie-Tooth disease type 1 (Orphanet:65753), Distal hereditary motor neuropathy (Orphanet:53739), Gaucher disease (Orphanet:355)
HPO phenotypes
47 total (30 of 47 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000639 | Nystagmus |
| HP:0001171 | Split hand |
| HP:0001178 | Ulnar claw |
| HP:0001252 | Hypotonia |
| HP:0001265 | Hyporeflexia |
| HP:0001270 | Motor delay |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001308 | Tongue fasciculations |
| HP:0001604 | Vocal cord paresis |
| HP:0001761 | Pes cavus |
| HP:0001763 | Pes planus |
| HP:0001765 | Hammertoe |
| HP:0002066 | Gait ataxia |
| HP:0002136 | Broad-based gait |
| HP:0002280 | Enlarged cisterna magna |
| HP:0002460 | Distal muscle weakness |
| HP:0002505 | Loss of ambulation |
| HP:0002650 | Scoliosis |
| HP:0002751 | Kyphoscoliosis |
| HP:0002922 | Increased CSF protein concentration |
| HP:0002936 | Distal sensory impairment |
| HP:0003202 | Skeletal muscle atrophy |
| HP:0003376 | Steppage gait |
| HP:0003380 | Decreased number of peripheral myelinated nerve fibers |
| HP:0003382 | Hypertrophic nerve changes |
| HP:0003383 | Onion bulb formation |
| HP:0003387 | Decreased number of large peripheral myelinated nerve fibers |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003827_4 | Otitis media | 2.000000e-07 |
| GCST003828_1 | Otitis media (chronic) | 3.000000e-08 |
| GCST003829_4 | Otitis media (recurrent) | 1.000000e-07 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| D005776 | Gaucher Disease | C10.228.140.163.100.435.825.400; C16.320.565.189.435.825.400; C16.320.565.398.641.803.441; C16.320.565.595.554.825.400; C18.452.132.100.435.825.400; C18.452.584.563.641.803.441; C18.452.648.189.435.825.400; C18.452.648.398.641.803.441; C18.452.648.595.554.825.400 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295741 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 4 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.21 | Kd | 61.12 | nM | CHEMBL5653589 |
| 7.21 | ED50 | 61.12 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 18 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149066: Binding affinity to human PRDX6 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0611 | uM |
CTD chemical–gene interactions
83 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, increases expression | 3 |
| Tobacco Smoke Pollution | affects expression, decreases expression, decreases methylation | 3 |
| Cadmium Chloride | increases expression, decreases reaction, increases abundance, increases palmitoylation | 3 |
| sodium arsenite | increases abundance, increases expression, decreases expression, affects cotreatment | 2 |
| Arsenic | increases expression, affects cotreatment, increases abundance | 2 |
| Cadmium | decreases reaction, increases abundance, increases palmitoylation, increases expression | 2 |
| Hydrogen Peroxide | increases expression, decreases response to substance | 2 |
| tert-Butylhydroperoxide | decreases response to substance, increases expression | 2 |
| Nanotubes, Carbon | affects expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| bismuth tripotassium dicitrate | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| chlorophyllin | decreases expression | 1 |
| cumene hydroperoxide | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment, affects localization | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| ochratoxin A | decreases reaction, decreases expression, increases reaction | 1 |
| cupric oxide | increases expression | 1 |
| 1,2-naphthoquinone | affects binding, decreases activity | 1 |
| glycidamide | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 1-(2-(3,4-dichlorophenyl)ethyl)-4-methylpiperazine | decreases expression, increases reaction | 1 |
| gambierol | decreases expression, affects cotreatment | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression | 1 |
| obeticholic acid | decreases expression | 1 |
ChEMBL screening assays
15 unique, capped per target: 15 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4118669 | Binding | Binding affinity to PRDX6 in human NCI-H23 cells at 1 uM by mass spectrometry based pull down assay | Studies of TAK1-centered polypharmacology with novel covalent TAK1 inhibitors. — Bioorg Med Chem |
Cellosaurus cell lines
6 cell lines: 6 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A7AS | HeLa PRDX6 KO | Cancer cell line | Female |
| CVCL_C7DF | Abcam A-549 PRDX6 KO | Cancer cell line | Male |
| CVCL_C7E5 | Abcam HCT 116 PRDX6 KO | Cancer cell line | Male |
| CVCL_D1YJ | Abcam THP-1 PRDX6 KO | Cancer cell line | Male |
| CVCL_TG55 | HAP1 PRDX6 (-) 1 | Cancer cell line | Male |
| CVCL_XR82 | HAP1 PRDX6 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00380965 | PHASE4 | COMPLETED | Evaluation of the Efficacy of Cesamet™ for the Treatment of Pain in Patients With Chemotherapy-Induced Neuropathy |
| NCT00487981 | PHASE4 | TERMINATED | Spinal Cord Stimulation for Painful Diabetic Neuropathy |
| NCT00904202 | PHASE4 | COMPLETED | A Study Of Lidocaine Patch 5% Alone, Gabapentin Alone, And Lidocaine Patch 5% And Gabapentin In Combination For The Relief Of Pain In Patients With Diverse Peripheral Neuropathic Pain Conditions |
| NCT01192113 | PHASE4 | COMPLETED | Safety and Efficacy of Mecobalamin Injection in Peripheral Neuropathies Patients (Study JGAZSY091109) |
| NCT01373983 | PHASE4 | COMPLETED | Intrathecal Bolus Doses of Ziconotide |
| NCT01458015 | PHASE4 | TERMINATED | Tapentadol Versus Oxycodone - a Mechanism-based Treatment Approach in Neuropathic Pain |
| NCT02074267 | PHASE4 | COMPLETED | Clinical Study for Assessment of the Efficacy of Gabapentin (Carbatin and Neurontin) in Patients With Neuropathy Pain |
| NCT02372149 | PHASE4 | UNKNOWN | IVIg for Demyelination in Diabetes Mellitus |
| NCT02670161 | PHASE4 | ENROLLING_BY_INVITATION | Quality Improvement and Practice Based Research in Neurology Using the EMR |
| NCT07022938 | PHASE4 | COMPLETED | Nutritional Supplement for Treating Chemotherapy Induced Neuropathy |
| NCT07025005 | PHASE4 | RECRUITING | Fenofibrate Role in the Prophylaxis From Peripheral Neuropathy Induced by Bortezomib, Lenalidomide and Dexamethasone (VRd) Protocol in the Treatment of Patients With Multiple Myeloma (MM) |
| NCT04762758 | PHASE3 | UNKNOWN | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients |
| NCT00058071 | PHASE3 | COMPLETED | Amifostine in Treating Peripheral Neuropathy in Patients Who Have Received Chemotherapy for Cancer |
| NCT00125268 | PHASE3 | TERMINATED | Near Infrared Light for the Treatment of Painful Peripheral Neuropathy |
| NCT00195013 | PHASE3 | COMPLETED | Randomized Placebo-Controlled Trial of Glutamine for Breast Cancer Patients With Peripheral Neuropathy |
| NCT00232141 | PHASE3 | COMPLETED | Study of Pregabalin Versus Placebo in the Treatment of Nerve Pain Associated With HIV Neuropathy |
| NCT00264875 | PHASE3 | COMPLETED | Open Label Safety And Efficacy Study Of Pregabalin In Subjects With Nerve Pain Asociated With Human Immunodeficiency Virus (HIV) Neuropathy |
| NCT00369564 | PHASE3 | COMPLETED | Glutamic Acid in Reducing Nerve Damage Caused by Vincristine in Young Patients With Cancer |
| NCT00471445 | PHASE3 | COMPLETED | Topical Amitriptyline and Ketamine Cream in Treating Peripheral Neuropathy Caused by Chemotherapy in Cancer Patients |
| NCT00489411 | PHASE3 | COMPLETED | Duloxetine in Treating Peripheral Neuropathy Caused by Chemotherapy in Patients With Cancer |
| NCT00710554 | PHASE3 | COMPLETED | A Study of Sativex® for Pain Relief of Peripheral Neuropathic Pain, Associated With Allodynia |
| NCT00711880 | PHASE3 | COMPLETED | A Study of Sativex® for Relief of Peripheral Neuropathic Pain Associated With Allodynia. |
| NCT00713323 | PHASE3 | COMPLETED | A Study to Compare the Safety and Tolerability of Sativex® in Patients With Neuropathic Pain. |
| NCT00713817 | PHASE3 | COMPLETED | A Study to Determine the Maintenance of Effect After Long-term Treatment of Sativex® in Subjects With Neuropathic Pain |
| NCT00775645 | PHASE3 | COMPLETED | S0715: Acetyl-L-Carnitine in Preventing Neuropathy in Women With Stage I, II, or IIIA Breast Cancer Undergoing Chemo |
| NCT00872352 | PHASE3 | UNKNOWN | Evaluation of Bortezomib Induced Peripheral Neuropathy of Multiple Myeloma (MM) Patients |
| NCT00998738 | PHASE3 | TERMINATED | Calcium and Magnesium in Preventing Peripheral Neuropathy Caused by Ixabepilone in Patients With Breast Cancer |
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Related Atlas pages
- Associated diseases: Charcot-Marie-Tooth disease type 3, Charcot-Marie-Tooth disease type 4F, Charcot-Marie-Tooth disease type 4
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease, Charcot-Marie-Tooth disease type 1, Charcot-Marie-Tooth disease type 3, Charcot-Marie-Tooth disease type 4, Charcot-Marie-Tooth disease type 4F, Charcot-Marie-Tooth disease type 5, distal hereditary motor neuropathy, Gaucher disease, otitis media, peripheral neuropathy, spinocerebellar ataxia 46