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PRKCG

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Also known as PKCCMGC57564PKCγ

Summary

PRKCG (protein kinase C gamma, HGNC:9402) is a protein-coding gene on chromosome 19q13.42, encoding Protein kinase C gamma type (P05129). Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that plays diverse roles in neuronal cells and eye tissues, such as regulation of the neuronal receptors GRIA4/GLUR4 and GRIN1/NMDAR1, modulation of receptors and neuronal functio….

Protein kinase C (PKC) is a family of serine- and threonine-specific protein kinases that can be activated by calcium and second messenger diacylglycerol. PKC family members phosphorylate a wide variety of protein targets and are known to be involved in diverse cellular signaling pathways. PKC also serve as major receptors for phorbol esters, a class of tumor promoters. Each member of the PKC family has a specific expression profile and is believed to play distinct roles in cells. The protein encoded by this gene is one of the PKC family members. This protein kinase is expressed solely in the brain and spinal cord and its localization is restricted to neurons. It has been demonstrated that several neuronal functions, including long term potentiation (LTP) and long term depression (LTD), specifically require this kinase. Knockout studies in mice also suggest that this kinase may be involved in neuropathic pain development. Defects in this protein have been associated with neurodegenerative disorder spinocerebellar ataxia-14 (SCA14). Two transcript variants encoding different isoforms have been found for this gene.

Source: NCBI Gene 5582 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): spinocerebellar ataxia type 14 (Definitive, GenCC)
  • Clinical variants (ClinVar): 420 total — 20 pathogenic, 36 likely-pathogenic (top 8% of genes corpus-wide)
  • Regional missense constraint (gnomAD): 2 of 7 regions constrained (≈19% of expected missense variation)
  • GTEx eGene: eQTL in 4 tissues, sQTL in 0 (q < 0.05)
  • Phenotypes (HPO): 30
  • ChEMBL bioactivity: 23 clinical-phase molecules tested; no curated mechanism-of-action drug
  • Constraint (gnomAD): pLI 0.99 (loss-of-function intolerant), LOEUF 0.48 (moderately constrained)
  • MANE Select transcript: NM_002739
  • Interaction hub: 1,925 STRING partners (top 8% of genes corpus-wide)

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9402
Approved symbolPRKCG
Nameprotein kinase C gamma
Location19q13.42
Locus typegene with protein product
StatusApproved
AliasesPKCC, MGC57564, PKCγ
Ensembl geneENSG00000126583
Ensembl biotypeprotein_coding
OMIM176980
Entrez5582

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 7 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron, 1 nonsense_mediated_decay

MANE Select: ENST00000263431

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1, TSL 4: 2, TSL 5: 1

ENST00000263431, ENST00000419486, ENST00000474397, ENST00000479081, ENST00000682028, ENST00000682268, ENST00000682676, ENST00000682902, ENST00000683513, ENST00001059646, ENST00001141984

RefSeq mRNA: 2 — MANE Select: NM_002739 NM_001316329, NM_002739

CCDS: CCDS12867, CCDS92683

Canonical transcript exons

ENST00000263431 — 18 exons

ExonStartEnd
ENSE000007247155389250953892643
ENSE000007247315389298853893075
ENSE000008952875390631753906457
ENSE000008952975390061153900749
ENSE000008952985390041953900481
ENSE000008952995390023353900324
ENSE000008953025389844053898628
ENSE000009540025390670753907652
ENSE000012456925389167453891830
ENSE000012457545388219753882664
ENSE000012457685390463553904742
ENSE000017449945390307353903153
ENSE000030135725388988653890017
ENSE000035271015388416153884243
ENSE000035468675388316353883194
ENSE000035838965389795953898111
ENSE000036076225389336253893391
ENSE000036721815388963853889749

Expression profiles

Bgee: expression breadth ubiquitous, 141 present calls, max score 93.11.

FANTOM5 (CAGE): breadth broad, TPM avg 4.2837 / max 370.9603, expressed in 283 samples.

Highest expression (Bgee): frontal lobe, nucleus accumbens, prefrontal cortex, amygdala, Brodmann (1909) area 9.

Genetic regulation across tissues (GTEx eQTL / sQTL)

PRKCG is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 4 tissues and its splicing (sQTL) in 0 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

4 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Pancreaseqtl1.4e-25-2.0719:53882183:A:C
Pituitaryeqtl7.7e-06-1.2519:53882183:A:C
Whole Bloodeqtl2.9e-02-0.5519:53894210:C:T
Skin Sun Exposed Lower legeqtl3.0e-02-0.2219:54424853:A:C

FANTOM5 promoters

4 alternative TSS:

Promoter IDTPM avgSamples expressed
1774273.6096276
1774280.430688
1774290.185566
2089200.058036

Top tissues by expression

showing 100 of 264 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right frontal lobeUBERON:000281093.11gold quality
nucleus accumbensUBERON:000188292.75gold quality
prefrontal cortexUBERON:000045191.76gold quality
amygdalaUBERON:000187689.74gold quality
Brodmann (1909) area 9UBERON:001354089.50gold quality
cingulate cortexUBERON:000302789.15gold quality
anterior cingulate cortexUBERON:000983588.93gold quality
caudate nucleusUBERON:000187388.91gold quality
right hemisphere of cerebellumUBERON:001489088.29gold quality
frontal cortexUBERON:000187087.53gold quality
dorsolateral prefrontal cortexUBERON:000983487.30gold quality
Ammon’s hornUBERON:000195487.07gold quality
oocyteCL:000002386.66gold quality
neocortexUBERON:000195086.44gold quality
temporal lobeUBERON:000187185.65gold quality
telencephalonUBERON:000189385.40gold quality
cerebral cortexUBERON:000095685.30gold quality
putamenUBERON:000187484.99gold quality
cerebellar cortexUBERON:000212983.62gold quality
cerebellar hemisphereUBERON:000224583.62gold quality
entorhinal cortexUBERON:000272882.62gold quality
forebrainUBERON:000189082.02gold quality
cerebellumUBERON:000203781.28gold quality
brainUBERON:000095580.75gold quality
superior frontal gyrusUBERON:000266180.54gold quality
central nervous systemUBERON:000101780.06gold quality
secondary oocyteCL:000065579.10gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047374.99gold quality
postcentral gyrusUBERON:000258174.54gold quality
hypothalamusUBERON:000189874.37gold quality
parietal lobeUBERON:000187273.61gold quality
parotid glandUBERON:000183172.54gold quality
cortical plateUBERON:000534372.33gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099170.69gold quality
primary visual cortexUBERON:000243670.56gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450270.18gold quality
right testisUBERON:000453468.83gold quality
left testisUBERON:000453368.20gold quality
substantia nigraUBERON:000203867.45gold quality
occipital lobeUBERON:000202167.28gold quality
buccal mucosa cellCL:000233667.19gold quality
biceps brachiiUBERON:000150767.12gold quality
triceps brachiiUBERON:000150966.54gold quality
gluteal muscleUBERON:000200066.39gold quality
testisUBERON:000047366.38gold quality
midbrainUBERON:000189166.38gold quality
endothelial cellCL:000011566.23gold quality
cerebellar vermisUBERON:000472066.04silver quality
trabecular bone tissueUBERON:000248365.81gold quality
Brodmann (1909) area 10UBERON:001354165.63silver quality
germinal epithelium of ovaryUBERON:000130465.58gold quality
left ventricle myocardiumUBERON:000656665.38gold quality
lateral nuclear group of thalamusUBERON:000273664.02silver quality
cardiac muscle of right atriumUBERON:000337963.80gold quality
myocardiumUBERON:000234963.74gold quality
upper arm skinUBERON:000426363.63gold quality
middle temporal gyrusUBERON:000277163.62silver quality
frontal poleUBERON:000279563.56gold quality
bone marrowUBERON:000237163.11gold quality
amniotic fluidUBERON:000017363.02gold quality
deltoidUBERON:000147662.79gold quality
quadriceps femorisUBERON:000137762.64gold quality
vastus lateralisUBERON:000137962.64gold quality
spermCL:000001962.62gold quality
nasal cavity epitheliumUBERON:000538461.78gold quality
male germ cellCL:000001561.76gold quality
palpebral conjunctivaUBERON:000181261.72gold quality
tendon of biceps brachiiUBERON:000818861.57gold quality
cartilage tissueUBERON:000241861.46gold quality
pigmented layer of retinaUBERON:000178261.37gold quality
Brodmann (1909) area 23UBERON:001355461.10silver quality
gingivaUBERON:000182860.68gold quality
middle frontal gyrusUBERON:000270260.62gold quality
deciduaUBERON:000245060.45gold quality
mammalian vulvaUBERON:000099760.34gold quality
paraflocculusUBERON:000535160.18gold quality
vena cavaUBERON:000408759.79gold quality
esophagus squamous epitheliumUBERON:000692059.74gold quality
mucosa of sigmoid colonUBERON:000499359.65gold quality
ileal mucosaUBERON:000033159.62silver quality
dorsal plus ventral thalamusUBERON:000189759.50silver quality
C1 segment of cervical spinal cordUBERON:000646959.36gold quality
lateral globus pallidusUBERON:000247659.28silver quality
thymusUBERON:000237059.11gold quality
spinal cordUBERON:000224058.97gold quality
epithelium of esophagusUBERON:000197658.74gold quality
gingival epitheliumUBERON:000194958.61gold quality
seminal vesicleUBERON:000099858.45gold quality
bronchial epithelial cellCL:000232858.28gold quality
squamous epitheliumUBERON:000691458.23gold quality
islet of LangerhansUBERON:000000658.03gold quality
heart right ventricleUBERON:000208057.96gold quality
epithelium of nasopharynxUBERON:000195157.76gold quality
corpus callosumUBERON:000233657.63gold quality
ventral tegmental areaUBERON:000269157.57silver quality
mammary ductUBERON:000176557.41gold quality
adult organismUBERON:000702357.28silver quality
epithelium of mammary glandUBERON:000324457.17gold quality
epithelium of bronchusUBERON:000203157.09gold quality
oral cavityUBERON:000016757.08gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes2.80

HPA expression

RNA tissue specificity: Tissue enriched

49 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPMProtein (IHC)
Hippocampal formationtissue299.6
Hippocampustissue193.1high
Frontal cortextissue177.4
Cerebral cortextissue175.2low
Motor cortextissue175.2
Retrosplenial cortextissue161.3
Prefrontal cortextissue155.2
Retrosplenial and cingulate cortextissue150.2
Temporal cortextissue147.6
Entorhinal cortextissue143.9
Insular cortextissue141.2
Amygdalatissue128.3
Caudate putamentissue124.8
Nucleus accumbenstissue124.7
Thalamustissue119.5
Basal gangliatissue114.7not detected
Cerebellumtissue108.3high
Postcentral gyrustissue104.6
Somatosensory cortextissue101.9
Occipital cortextissue86.0
Superior colliculitissue85.4
Midbraintissue79.4
Ventral forebraintissue79.4
Septumtissue66.3
Ponstissue65.2
Putamentissue49.1
Periaqueductal graytissue33.1
Hypothalamustissue29.3
Olfactory bulbtissue26.9
Substantia nigratissue15.2
Medulla oblongatatissue12.1
Corpus callosumtissue10.2
Locus coeruleustissue9.4
Spinal cordtissue8.0
Parathyroid glandtissue1.8not detected
Thymustissue1.8
Choroid plexustissue1.7
Pancreastissue1.5not detected
Testistissue1.3not detected
Bone marrowtissue0.7not detected
Pituitary glandtissue0.3
Stomach 1tissue0.3not detected
Tonguetissue0.2
Retinatissue0.1
Smooth muscletissue0.1not detected
Colontissue0.1not detected
Small intestinetissue0.1not detected
Duodenumtissue0.1not detected
Fallopian tubetissue0.1not detected

Brain sub-regions (HPA Brain Atlas): detected in 188; highest nTPM — Dorsal hippocampus (299.6), Ventral hippocampus (256.3), Hippocampus, CA1 (246.9), Hippocampus, CA3 (209.3), Subiculum (200.0).

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AP1, AR, EGR1, FOS, HR, IRF1, JUN, MYC, NFATC2, NFKB, NKX2-2, NR3C1, NR5A1, PDX1, PITX2, RELA, SP1, SP3, STAT3, TFAP2A, TP53, TXK, ZHX2

miRNA regulators (miRDB)

Targeting PRKCG by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

showing 30 of 81 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3925-3P100.0069.951237
HSA-MIR-4725-3P99.9669.532520
HSA-MIR-6780B-5P99.9669.602562
HSA-MIR-211099.9666.681930
HSA-MIR-6825-5P99.9669.813431
HSA-MIR-448799.9664.581252
HSA-MIR-6508-5P99.9270.672465
HSA-MIR-515-5P99.9269.822343
HSA-MIR-519E-5P99.9269.622358
HSA-MIR-4731-5P99.8967.232537
HSA-MIR-427199.8868.322244
HSA-MIR-6857-5P99.8765.32985
HSA-MIR-806799.8669.592260
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-76599.8468.242442
HSA-MIR-6756-5P99.8267.972466
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-6842-5P99.8067.541587
HSA-MIR-7110-5P99.8067.841712
HSA-MIR-320A-3P99.7769.732107
HSA-MIR-320B99.7769.732107
HSA-MIR-320C99.7769.732107
HSA-MIR-320D99.7769.732107
HSA-MIR-442999.7769.622111
HSA-MIR-129999.7771.242389
HSA-MIR-6763-5P99.7664.681767
HSA-MIR-3150A-3P99.7664.441640
HSA-MIR-6779-5P99.7065.762363
HSA-MIR-453099.6966.471509
HSA-MIR-64699.6867.841645

Functional genomics

gnomAD constraint: pLI 0.994, LOEUF 0.476, missense Z 3.84 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD)

ENST00000263431 splits into 7 regions with different missense tolerance; 2 are missense-constrained (≈19% of the expected missense variation). Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD

Region (GRCh38)Missense obs / expo/eConstrained
19:53,882,495–53,882,54727 / 23.91.13no
19:53,882,548–53,889,74150 / 146.50.34yes (p 1.5e-15)
19:53,889,742–53,898,082261 / 312.10.84no
19:53,898,083–53,898,54522 / 59.00.37no
19:53,898,546–53,900,47478 / 105.60.74no
19:53,900,475–53,900,6834 / 32.30.12yes (p 6.3e-07)
19:53,900,684–53,906,892198 / 273.40.72no

Literature-anchored findings (GeneRIF, showing 40)

  • REVIEW:Interaction of protein kinase C isozymes with membranes containing anionic phospholipids utilizing fluorescent phorbol esters to probe the properties of the C1 domains (PMID:12093536)
  • Missense mutations occur in the regulatory domain of PKC gamma: a new mechanism for dominant nonepisodic cerebellar ataxia. (PMID:12644968)
  • the affinity of isolated C1A and C1B domains of PKCalpha and PKCgamma for soluble and membrane-incorporated DAG and phorbol ester were measured by isothermal calorimetry and surface plasmon resonance in order to compare activation mechanisms (PMID:12954613)
  • activation of mGluR5 causes translocation of both gammaPKC and deltaPKC to the plasma membrane. deltaPKC, but not gammaPKC, phosphorylates mGluR5 Thr(840), leading to the blockade of both Ca2+ oscillations and gammaPKC cycling. (PMID:14561742)
  • Spinocerebellar ataxia(SCA) type 14 is caused by mutations in PRKCG gene. The observation that all 4 PRKCG mutations identified in patients with SCA to date are located in exon 4 suggests a critical role for this region of the gene in cerebellar function. (PMID:14676051)
  • We sequenced exons 4 and 5 of PRKCG and detected a missense mutation in exon 4, involving a G–>A transition in nucleotide 353 and resulting in a glycine-to-aspartic acid substitution at residue 118 in a Dutch autosomal dominant cerebellar ataxia family (PMID:14694043)
  • osmotic shock in human keratinocytes leads to activation of phospholipase C-gamma1 (PMID:15014953)
  • A novel missense mutation, F643L, which maps to a highly conserved amino acid of the catalytic domain of protein kinase C gamma, extends the phenotype associated with the spinocerebellar ataxia type 14 (SCA14) locus. (PMID:15313841)
  • spinocerebellar ataxia type 14 mutations make gammaPKC form cytoplasmic aggregates, which may play a role in development of SCA14 (PMID:15964845)
  • Six mutations were found that segregated with the disease including F643L (exon 18), Five new missense mutations were identified in exons 4 (C114Y/G123R/G123E), 10 (G360S) and 18 (V692G). (PMID:16193476)
  • These results indicate that PKCgamma regulates NMHC-IIB phosphorylation and cellular localization in response to EGF stimulation. (PMID:16394101)
  • These results suggest that the PKC gamma R659S mutation is susceptible to neuronal death and is involved in the pathogenesis of neurodegenerative diseases, including Retinitis pigmentosa. (PMID:16828200)
  • The present findings show that the interaction between PKCgamma and GluR4 is specifically required to assure PKC-driven phosphorylation and surface membrane expression of GluR4. (PMID:17233759)
  • PRKCG mutation (SCA-14) causing a Ramsay Hunt phenotype. (PMID:17343273)
  • detection of a new mutation in PRKCG responsible for spinocerebellar ataxia type 14, which may be located in a mutational hot spot (PMID:17562946)
  • Codon 101 of PRKCG, a preferential mutation site in SCA14. (PMID:17659643)
  • This study present a benign SCA14 phenotype in a German patient associated with a missense mutation in exon 3 of the PRKCG gene (PMID:17708558)
  • PKCgamma, but not C1 domain mutants, inhibits Ca2+ influx in response to muscarinic receptor stimulation. (PMID:18499672)
  • These studies suggest that Purkinje cell damage in SCA14 may result from a reduction of PKCgamma activity due its aberrant sequestration in the early endosome compartment. (PMID:18503760)
  • The impact of three C1B regulatory subdomain mutations on the intracellular kinetics, protein conformation and kinase activity of PKCgamma in living cells, was investigated. (PMID:18577575)
  • Rac regulates the interaction of fascin with active PKC. (PMID:18716283)
  • study investigated whether mutant gammaPKC formed aggregates and how mutant gammaPKC affects the morphology and survival of cerebellar Purkinje cells (PCs), which are degenerated in SCA14 patients (PMID:19041943)
  • ezrin is regulated during osteosarcoma metastasis by PKC (PMID:19060919)
  • Using shotgun mass spectrometry, we found this protein differentially expressed in the dorsolateral prefrontal cortex from patients with schizophrenia. (PMID:19165527)
  • Protein kinase C gamma, a causative for spinocerebellar ataxia, negatively regulates nuclear import of aprataxin. (PMID:19561170)
  • PMA-responsive cPKC isoforms (alpha, beta and gamma) play a key role in negative regulation of CD98 signalling and homotypic aggregation (PMID:19895572)
  • The presence of unphosphorylated PKC-gamma in HT29 cells, and its complete absence in Caco2 cells demonstrates a cell type-dependent differential coupling of Thr514-phosphorylation with de novo synthesis of PKC-gamma in colon cancer cells. (PMID:20188713)
  • data support the idea that RanBP9 and RanBP10 may function as signaling integrators and dictate the efficient regulation of D(1) receptor signaling by PKCdelta and PKCgamma (PMID:20395553)
  • These results indicate that autophagy contributes to the degradation of mutant gammaPKC, suggesting that autophagic inducers could provide therapeutic potential for SCA14. (PMID:20398063)
  • This protein has been found differentially expressed in thalami from patients with schizophrenia. (PMID:20471030)
  • Protein Kinase C gamma rs3745406 polymorphism is not significantly associated with major depressive disorder. (PMID:20627017)
  • Data show that through HINT1, the MOR facilitates the cross-talk of two NO- and zinc-regulated signal-transduction pathways, PKC/Src and Raf-1/ERK1/2, implicated in the negative control of morphine effects. (PMID:21235400)
  • SCA14, a novel mutation in the PRKCG gene, was found in two families in Norway with autosomal dominant cerebellar ataxia. (PMID:21434874)
  • cPLA(2)-dependent AA release is required for VEGF-induced Src-PLD1-PKCgamma-mediated pathological retinal angiogenesis (PMID:21536681)
  • The Spinocerebellar ataxia type 14 is caused by mutations in the protein kinase C gamma (PKCgamma, PRKCG) gene with a hotspot for mutations in exon 4. Genetic testing for SCA14 is clinically available. (PMID:21827914)
  • We propose that variety of mutant gammaPKC characters integrally and complicatedly participate in the pathophysiology of SCA 14. (PMID:21906004)
  • Exome sequencing of large, 5-generational British kindred finds a novel p.Arg26Gly mutation in the PRKCG gene causing familial spinocerebellar ataxia 14. (PMID:22675081)
  • Spinocerebellar ataxia type 14 mutant PKC-gamma upregulates Hsp70. Hsp70 has a role in degrading mutant PKC-gamma. (PMID:24021284)
  • PKCgamma plays a critical role in cancer cells, and simultaneous inhibition of PKCgamma and Hsp90alpha synergistically prevents cell migration and promotes apoptosis in cancer cells. (PMID:24117238)
  • we show that the mutation V138E of the protein kinase C gamma (PKCgamma) C1B domain, which is implicated in spinocerebellar ataxia type 14, exhibits a partially unfolded C-terminus (PMID:24134140)

Cross-species orthologs

10 orthologs

OrganismSymbolGene ID
danio_rerioprkcgENSDARG00000004561
mus_musculusPrkcgENSMUSG00000078816
rattus_norvegicusPrkcgENSRNOG00000054371
drosophila_melanogasterPkc53EFBGN0003091
drosophila_melanogasterinaCFBGN0004784
drosophila_melanogasterPknFBGN0020621
drosophila_melanogasterPkcdeltaFBGN0287828
caenorhabditis_elegansWBGENE00004033
caenorhabditis_elegansWBGENE00006599
caenorhabditis_elegansWBGENE00009793

Paralogs (9): PRKCH (ENSG00000027075), PKN2 (ENSG00000065243), PRKCZ (ENSG00000067606), PKN1 (ENSG00000123143), PRKCA (ENSG00000154229), PKN3 (ENSG00000160447), PRKCI (ENSG00000163558), PRKCB (ENSG00000166501), PRKCE (ENSG00000171132)

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:97597) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 18 distinct phenotype terms.

Mouse phenotype (MP)Records
impaired behavioral response to alcohol2
abnormal cerebellar molecular layer1
decreased anxiety-related response1
ataxia1
impaired coordination1
abnormal gait1
abnormal spatial learning1
abnormal contextual conditioning behavior1
reduced long-term potentiation1
decreased inflammatory response1
abnormal pain threshold1
alcohol preference1
abnormal innervation1
abnormal nociception after inflammation1
abnormal excitatory postsynaptic currents1
abnormal Purkinje cell dendrite morphology1
enhanced behavioral response to alcohol1
abnormal impulsive behavior control1

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Bos taurusP4801899.8%Diamond
Pongo abeliiQ5R4J599.8%Diamond
Macaca fascicularisQ60HC099.8%Diamond
Oryctolagus cuniculusP0577299.4%Diamond
Anser cygnoidesA0A075F93298.8%Diamond
Gallus gallusP4719198.8%Diamond
Xenopus laevisQ6IP7697.1%Diamond
Xenopus tropicalisQ67E0095.4%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
VSTM1protein-coding284415
CACNG8protein-coding59283
CACNG7protein-coding59284
CACNG6protein-coding59285
MIR373ncRNA442918
NLRP12protein-coding91662
MYADMprotein-coding91663
MIR935ncRNA100126325
MYADM-AS1ncRNA105372457
MIR372ncRNA442917

Protein

Protein identifiers

Protein kinase C gamma type — P05129 (reviewed: P05129)

All UniProt accessions (7): A0A804HHY0, A0A804HIU5, B7Z870, P05129, H7BZ60, M0R0I9, M0R0Z4

UniProt curated annotations — full annotation on UniProt →

Function. Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that plays diverse roles in neuronal cells and eye tissues, such as regulation of the neuronal receptors GRIA4/GLUR4 and GRIN1/NMDAR1, modulation of receptors and neuronal functions related to sensitivity to opiates, pain and alcohol, mediation of synaptic function and cell survival after ischemia, and inhibition of gap junction activity after oxidative stress. Binds and phosphorylates GRIA4/GLUR4 glutamate receptor and regulates its function by increasing plasma membrane-associated GRIA4 expression. In primary cerebellar neurons treated with the agonist 3,5-dihyidroxyphenylglycine, functions downstream of the metabotropic glutamate receptor GRM5/MGLUR5 and phosphorylates GRIN1/NMDAR1 receptor which plays a key role in synaptic plasticity, synaptogenesis, excitotoxicity, memory acquisition and learning. May be involved in the regulation of hippocampal long-term potentiation (LTP), but may be not necessary for the process of synaptic plasticity. May be involved in desensitization of mu-type opioid receptor-mediated G protein activation in the spinal cord, and may be critical for the development and/or maintenance of morphine-induced reinforcing effects in the limbic forebrain. May modulate the functionality of mu-type-opioid receptors by participating in a signaling pathway which leads to the phosphorylation and degradation of opioid receptors. May also contributes to chronic morphine-induced changes in nociceptive processing. Plays a role in neuropathic pain mechanisms and contributes to the maintenance of the allodynia pain produced by peripheral inflammation. Plays an important role in initial sensitivity and tolerance to ethanol, by mediating the behavioral effects of ethanol as well as the effects of this drug on the GABA(A) receptors. During and after cerebral ischemia modulate neurotransmission and cell survival in synaptic membranes, and is involved in insulin-induced inhibition of necrosis, an important mechanism for minimizing ischemic injury. Required for the elimination of multiple climbing fibers during innervation of Purkinje cells in developing cerebellum. Is activated in lens epithelial cells upon hydrogen peroxide treatment, and phosphorylates connexin-43 (GJA1/CX43), resulting in disassembly of GJA1 gap junction plaques and inhibition of gap junction activity which could provide a protective effect against oxidative stress. Phosphorylates p53/TP53 and promotes p53/TP53-dependent apoptosis in response to DNA damage. Involved in the phase resetting of the cerebral cortex circadian clock during temporally restricted feeding. Stabilizes the core clock component BMAL1 by interfering with its ubiquitination, thus suppressing its degradation, resulting in phase resetting of the cerebral cortex clock. Phosphorylates and activates LRRK1, which phosphorylates RAB proteins involved in intracellular trafficking.

Subunit / interactions. Interacts with GRIA4. Interacts with CDCP1. Interacts with TP53INP1 and p53/TP53. Interacts with BMAL1.

Subcellular location. Cytoplasm. Perinuclear region. Cell membrane. Synapse. Synaptosome. Cell projection. Dendrite.

Tissue specificity. Expressed in Purkinje cells of the cerebellar cortex.

Post-translational modifications. Autophosphorylation on Thr-674 appears to regulate motor functions of junctophilins, JPH3 and JPH4. Ubiquitinated.

Disease relevance. Spinocerebellar ataxia 14 (SCA14) [MIM:605361] Spinocerebellar ataxia is a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA14 is an autosomal dominant cerebellar ataxia (ADCA). The disease is caused by variants affecting the gene represented in this entry.

Activity regulation. Classical (or conventional) PKCs (PRKCA, PRKCB and PRKCG) are activated by calcium and diacylglycerol (DAG) in the presence of phosphatidylserine. Three specific sites; Thr-514 (activation loop of the kinase domain), Thr-655 (turn motif) and Thr-674 (hydrophobic region), need to be phosphorylated for its full activation.

Cofactor. Binds 3 Ca(2+) ions per subunit. The ions are bound to the C2 domain.

Similarity. Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.

Isoforms (2)

UniProt IDNamesCanonical?
P05129-11yes
P05129-22

RefSeq proteins (2): NP_001303258, NP_002730* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000008C2_domDomain
IPR000719Prot_kinase_domDomain
IPR000961AGC-kinase_CDomain
IPR002219PKC_DAG/PEDomain
IPR008271Ser/Thr_kinase_ASActive_site
IPR011009Kinase-like_dom_sfHomologous_superfamily
IPR014375Protein_kinase_C_a/b/gFamily
IPR017441Protein_kinase_ATP_BSBinding_site
IPR017892Pkinase_CDomain
IPR020454DAG/PE-bdDomain
IPR035892C2_domain_sfHomologous_superfamily
IPR046349C1-like_sfHomologous_superfamily

Pfam: PF00069, PF00130, PF00168, PF00433

Enzyme classification (BRENDA)

  • EC 2.7.11.13 — protein kinase C (BRENDA: 25 organisms, 203 substrates, 258 inhibitors, 20 Km, 1 kcat entries)

Substrate kinetics (BRENDA)

4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
FKKQGSFAKKK0.0166–0.059910
ATP0.0001–0.08284
N6-PHENYL-ATP0.01241
S6-(229-239) PEPTIDE0.00361

Catalyzed reactions (Rhea)

  • L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
  • L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)

UniProt features (69 total): binding site 16, modified residue 14, sequence variant 9, strand 9, helix 7, domain 3, splice variant 3, turn 3, zinc finger region 2, chain 1, sequence conflict 1, active site 1

Structure

Experimental structures (PDB)

2 structures by resolution:

PDBTitleMethodResolution (Å)
2UZPCrystal structure of the C2 domain of human protein kinase C gamma.X-RAY DIFFRACTION2
2E73Solution structure of the phorbol esters/diacylglycerol binding domain of protein kinase …SOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P05129-F182.320.53

Human Protein Atlas

Protein class: Enzymes, ENZYME proteins, Transferases, Kinases, AGC Ser/Thr protein kinases, Predicted intracellular proteins, RAS pathway related proteins, Disease related genes, FDA approved drug targets, Small molecule drugs, Human disease related genes

Protein evidence: Evidence at protein level

Antibody reliability (HPA): IH enhanced

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1)

PositionRole
480proton acceptor

Ligand- & substrate-binding residues (16)

PositionRole
193Ca(2+)
246Ca(2+)
247Ca(2+)
248Ca(2+)
251Ca(2+)
252Ca(2+)
254Ca(2+)
357–365ATP
380ATP
186Ca(2+)
187Ca(2+)

Post-translational modifications (14)

TypePositions
Phosphothreonine250, 332, 514, 648, 655, 674
Phosphoserine320, 322, 326, 328, 330, 373, 687
Phosphotyrosine675

Function

Pathways and Gene Ontology

Reactome pathways

5 curated (TAS) of 27; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

27 pathways:

IDPathwayEvidence
R-HSA-111933Calmodulin induced eventscurated
R-HSA-114516Disinhibition of SNARE formationcurated
R-HSA-76005Response to elevated platelet cytosolic Ca2+curated
R-HSA-416993Trafficking of GluR2-containing AMPA receptorscurated
R-HSA-5099900WNT5A-dependent internalization of FZD4curated
R-HSA-3858494Beta-catenin independent WNT signaling—
R-HSA-111996Ca-dependent events—
R-HSA-111997CaM pathway—
R-HSA-1489509DAG and IP3 signaling—
R-HSA-418594G alpha (i) signalling events—
R-HSA-418597G alpha (z) signalling eventselectronic
R-HSA-112040G-protein mediated events—
R-HSA-388396GPCR downstream signalling—
R-HSA-399721Glutamate binding, activation of AMPA receptors and synaptic plasticity—
R-HSA-109582Hemostasis—
R-HSA-9006925Intracellular signaling by second messengers—
R-HSA-112316Neuronal System—
R-HSA-112314Neurotransmitter receptors and postsynaptic signal transmission—
R-HSA-111885Opioid Signalling—
R-HSA-4086400PCP/CE pathway—
R-HSA-112043PLC beta mediated events—
R-HSA-76002Platelet activation, signaling and aggregation—
R-HSA-162582Signal Transduction—
R-HSA-372790Signaling by GPCR—
R-HSA-195721Signaling by WNT—
R-HSA-399719Trafficking of AMPA receptors—
R-HSA-112315Transmission across Chemical Synapses—

MSigDB gene sets: 388 (showing top): GOBP_CIRCADIAN_RHYTHM, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, GOBP_COGNITION, GOBP_BEHAVIOR, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, REACTOME_G_ALPHA_Z_SIGNALLING_EVENTS, KEGG_MAPK_SIGNALING_PATHWAY, GCANCTGNY_MYOD_Q6, SP3_Q3, GOBP_RESPONSE_TO_ANGIOTENSIN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_REGULATION_OF_EXOCYTOSIS, GOBP_RESPONSE_TO_FOOD

GO Biological Process (21): phospholipase C-activating G protein-coupled receptor signaling pathway (GO:0007200), chemical synaptic transmission (GO:0007268), learning or memory (GO:0007611), response to toxic substance (GO:0009636), negative regulation of protein ubiquitination (GO:0031397), regulation of response to food (GO:0032095), positive regulation of mismatch repair (GO:0032425), intracellular signal transduction (GO:0035556), negative regulation of protein catabolic process (GO:0042177), regulation of circadian rhythm (GO:0042752), response to morphine (GO:0043278), negative regulation of neuron apoptotic process (GO:0043524), response to pain (GO:0048265), rhythmic process (GO:0048511), long-term synaptic potentiation (GO:0060291), innervation (GO:0060384), negative regulation of proteasomal protein catabolic process (GO:1901799), response to angiotensin (GO:1990776), response to psychosocial stress (GO:1990911), regulation of synaptic vesicle exocytosis (GO:2000300), protein phosphorylation (GO:0006468)

GO Molecular Function (13): protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), diacylglycerol-dependent serine/threonine kinase activity (GO:0004697), calcium,diacylglycerol-dependent serine/threonine kinase activity (GO:0004698), protein serine/threonine/tyrosine kinase activity (GO:0004712), ATP binding (GO:0005524), zinc ion binding (GO:0008270), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), metal ion binding (GO:0046872)

GO Cellular Component (14): nucleus (GO:0005634), cytosol (GO:0005829), plasma membrane (GO:0005886), cell-cell junction (GO:0005911), postsynaptic density (GO:0014069), dendrite (GO:0030425), calyx of Held (GO:0044305), perinuclear region of cytoplasm (GO:0048471), synaptic membrane (GO:0097060), presynaptic cytosol (GO:0099523), postsynaptic cytosol (GO:0099524), cytoplasm (GO:0005737), neuron projection (GO:0043005), synapse (GO:0045202)

Reactome top-level categories

17 top-level categories:

CategoryPathways
Signal Transduction2
CaM pathway1
Response to elevated platelet cytosolic Ca2+1
Trafficking of AMPA receptors1
GPCR downstream signalling1
PCP/CE pathway1
Platelet activation, signaling and aggregation1
G alpha (i) signalling events1
PLC beta mediated events1
Ca-dependent events1
DAG and IP3 signaling1
Opioid Signalling1
G-protein mediated events1
Transmission across Chemical Synapses1
Neuronal System1
Intracellular signaling by second messengers1
Signaling by WNT1

GO top-level categories

showing 60 of 74 GO namespaces:

CategoryTerms
protein kinase activity3
cellular anatomical structure3
intracellular anatomical structure2
multicellular organismal response to stress2
cytoplasm2
cytosol2
G protein-coupled receptor signaling pathway1
phospholipase C activator activity1
anterograde trans-synaptic signaling1
behavior1
cognition1
response to chemical1
protein ubiquitination1
regulation of protein ubiquitination1
negative regulation of protein modification by small protein conjugation or removal1
response to food1
regulation of response to nutrient levels1
mismatch repair1
regulation of mismatch repair1
positive regulation of DNA repair1
signal transduction1
negative regulation of catabolic process1
protein catabolic process1
regulation of protein catabolic process1
negative regulation of protein metabolic process1
circadian rhythm1
regulation of biological process1
response to isoquinoline alkaloid1
negative regulation of apoptotic process1
regulation of neuron apoptotic process1
neuron apoptotic process1
biological_process1
regulation of synaptic plasticity1
positive regulation of synaptic transmission1
nerve development1
multicellular organismal process1
proteasomal protein catabolic process1
negative regulation of protein catabolic process1
regulation of proteasomal protein catabolic process1
response to peptide hormone1
synaptic vesicle exocytosis1
regulation of neurotransmitter secretion1
regulation of regulated secretory pathway1
kinase activity1
phosphotransferase activity, alcohol group as acceptor1
catalytic activity, acting on a protein1
protein serine/threonine kinase activity1
diacylglycerol-dependent serine/threonine kinase activity1
calcium-dependent protein serine/threonine kinase activity1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
anion binding1
transition metal ion binding1
nucleoside phosphate binding1
heterocyclic compound binding1
binding1
transferase activity, transferring phosphorus-containing groups1
catalytic activity1
cation binding1
intracellular membrane-bounded organelle1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 7 of 48 annotations. The rest are phylogenetic / computational / electronic (IEA).

7 experimentally-supported GO terms:

GO termNSEvidence
negative regulation of protein catabolic processBPdirect assay
negative regulation of protein ubiquitinationBPdirect assay
phospholipase C-activating G protein-coupled receptor signaling pathwayBPdirect assay
positive regulation of mismatch repairBPdirect assay
calcium,diacylglycerol-dependent serine/threonine kinase activityMFdirect assay
protein kinase activityMFdirect assay
protein serine/threonine/tyrosine kinase activityMFdirect assay

Protein interactions and networks

STRING

showing 15 of 1,925 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
PRKCGCACNG7P62955794
PRKCGCACNA1AP78510780
PRKCGCACNG8Q8WXS5778
PRKCGATXN7O15265773
PRKCGPLRG1O43660758
PRKCGPPP2R2BQ00005680
PRKCGATXN2Q99700655
PRKCGSPTBN2O15020650
PRKCGATXN1P54253618
PRKCGCALB1P05937617
PRKCGATXN3P54252609
PRKCGGRIA4P48058608
PRKCGKCNC3Q14003606
PRKCGPRPF31Q8WWY3576
PRKCGATXN10Q9UBB4570

IntAct

Human interaction partners of PRKCG in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

17 partners by confidence:

PartnerInteraction typeMIscoreRecords
PRKCAassociation0.8002
FAM167Aphysical association0.5603
KRT19physical association0.5603
PIAS1physical association0.5603
SAMD3physical association0.5603
TCP10Lphysical association0.5603
HSP90AB1physical association0.5601
YWHAEphysical association0.4002
SFNphysical association0.4001
PTPN1physical association0.3702
HSPB1association0.3501
PRKCBassociation0.3501
PRPSAP2association0.3501
PICK1physical association0.0002
CCHCR1physical association0.0001
EXOC5physical association0.0001
NOXA1physical association0.0001

BioGRID (81 interactions; top human partners by supporting records): PRKCA (Affinity Capture-MS; 4 records), GRIA4 (Affinity Capture-Western; 2 records), HSP90AA1 (Affinity Capture-MS; 2 records), RANBP10 (Reconstituted Complex; 2 records), AFAP1 (Reconstituted Complex), AIFM1 (Affinity Capture-MS), APP (Reconstituted Complex), ARHGEF25 (Reconstituted Complex), ARHGEF7 (Biochemical Activity), BAG2 (Affinity Capture-MS), CASR (Biochemical Activity), CCHCR1 (Two-hybrid), CDC37 (Affinity Capture-MS), CTNNB1 (Biochemical Activity), DAB2 (Biochemical Activity)

SIGNOR signaling

showing 42 of 58 signaling interactions:

AEffectBMechanism
PRKCGdown-regulatesGSK3Aphosphorylation
PDPK1up-regulatesPRKCGphosphorylation
PRKCGup-regulatesCHATphosphorylation
PRKCGdown-regulatesTNNI3phosphorylation
PRKCGdown-regulatesKIR3DL1phosphorylation
PRKCGup-regulatesAPTXphosphorylation
“bisindolylmaleimide i”down-regulatesPRKCG“chemical inhibition”
3-(1-methyl-3-indolyl)-4-[1-[1-(2-pyridinylmethyl)-4-piperidinyl]-3-indolyl]pyrrole-2,5-dionedown-regulatesPRKCG“chemical inhibition”
PRKCGup-regulatesANXA1phosphorylation
PRKCGdown-regulatesHSP90AA1phosphorylation
PRKCGup-regulatesARHGEF7phosphorylation
PRKCG“down-regulates activity”CYTH2phosphorylation
PRKCG“up-regulates activity”GRK2phosphorylation
PRKCGunknownCD5phosphorylation
PRKCGunknownPA2G4phosphorylation
PRKCG“up-regulates activity”TOP2Aphosphorylation
PRKCG“up-regulates activity”PSEN1phosphorylation
PRKCG“down-regulates activity”HABP4phosphorylation
PRKCG“down-regulates activity”NOS3phosphorylation
PRKCGup-regulatesAMPAphosphorylation
PRKCGup-regulatesRAF1phosphorylation
PRKCGup-regulatesGRK2phosphorylation
PRKCGup-regulatesCD5phosphorylation
PRKCGunknownRPS6KB2phosphorylation
PRKCGup-regulatesGRIA4phosphorylation
PRKCGunknownEIF4Ephosphorylation
PRKCG“down-regulates activity”STK17Bphosphorylation
PRKCG“down-regulates activity”GJA1phosphorylation
PRKCG“up-regulates activity”PEBP1phosphorylation
PRKCG“up-regulates activity”GRIN1phosphorylation
PRKCG“up-regulates activity”NRGNphosphorylation
PRKCG“up-regulates quantity by stabilization”VTNphosphorylation
PRKCGunknownSDC2phosphorylation
PRKCGunknownDAB2phosphorylation
PRKCG“up-regulates activity”GRIN2Bphosphorylation
PRKCG“up-regulates activity”OCLNphosphorylation
PRKCGunknownSTXBP1phosphorylation
PRKCG“down-regulates activity”STXBP1phosphorylation
PRKCG“up-regulates activity”GRM5phosphorylation
PRKCG“up-regulates activity”MGluRphosphorylation
PRKCG“down-regulates activity”MAPTphosphorylation
PRKCG“up-regulates activity”GSTP1phosphorylation

Disease & clinical

Genetic variants

Variant evidence for PRKCG: 420 ClinVar records (56 pathogenic / likely pathogenic). Per-variant detail is on Sugi Variant.

ClinVar

420 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic20
Likely pathogenic36
Uncertain significance205
Likely benign57
Benign50

Top pathogenic / likely-pathogenic (15)

Showing the 15 best-reviewed of 56 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.

Variant IDHGVSClassificationReviewSubmitters
13248NM_002739.5(PRKCG):c.380A>G (p.Gln127Arg)Pathogeniccriteria provided, multiple submitters, no conflicts4
42169NM_002739.5(PRKCG):c.413T>A (p.Val138Glu)Pathogeniccriteria provided, multiple submitters, no conflicts3
42140NM_002739.5(PRKCG):c.188G>T (p.Gly63Val)Likely pathogeniccriteria provided, multiple submitters, no conflicts5
804150NM_002739.5(PRKCG):c.379C>A (p.Gln127Lys)Likely pathogeniccriteria provided, multiple submitters, no conflicts2
1027477NM_002739.5(PRKCG):c.358C>T (p.Leu120Phe)Likely pathogeniccriteria provided, multiple submitters, no conflicts2
1283911NM_002739.5(PRKCG):c.1926C>G (p.Asn642Lys)Likely pathogeniccriteria provided, multiple submitters, no conflicts2
1333855NM_002739.5(PRKCG):c.220C>T (p.His74Tyr)Likely pathogeniccriteria provided, multiple submitters, no conflicts2
3584067NM_002739.5(PRKCG):c.220C>A (p.His74Asn)Likely pathogeniccriteria provided, multiple submitters, no conflicts2
13247NM_002739.5(PRKCG):c.353G>A (p.Gly118Asp)Pathogeniccriteria provided, single submitter6
13245NM_002739.5(PRKCG):c.355T>C (p.Ser119Pro)Pathogeniccriteria provided, single submitter3
13246NM_002739.5(PRKCG):c.383G>A (p.Gly128Asp)Pathogeniccriteria provided, single submitter3
13249NM_002739.5(PRKCG):c.1927T>C (p.Phe643Leu)Pathogeniccriteria provided, single submitter3
42163NM_002739.5(PRKCG):c.356C>T (p.Ser119Phe)Pathogeniccriteria provided, single submitter2
1027481NM_002739.5(PRKCG):c.1308C>G (p.Tyr436Ter)Pathogeniccriteria provided, single submitter1
13250NM_002739.5(PRKCG):c.1081A>G (p.Ser361Gly)Likely pathogeniccriteria provided, single submitter3

Per-variant reference — Sugi Variant

Explore PRKCG’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 35 predictions of 1,155):

Position(s)EffectΔscoreSites
19:53889636–53889637acceptor_loss1.00006
19:53889884–53889885acceptor_loss1.00004
19:53890000donor_gain1.0000
19:53890018–53890019donor_loss1.00005
19:53892644–53892645donor_loss1.00005
19:53898109donor_gain1.0000
19:53900231–53900232acceptor_loss1.00005
19:53900406acceptor_gain1.0000
19:53900409acceptor_gain1.0000
19:53900417–53900418acceptor_loss1.00006

AlphaMissense

2,890 missense substitutions predicted likely pathogenic (of 4,597 scored), across 557 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
M44390.9891.000
M50190.9851.000
M18690.9820.999
M43490.9810.999
M25690.9460.999
M54890.9411.000
M48790.9351.000
D24681.0001.000
D24881.0001.000
D48081.0001.000
D48481.0001.000
N48581.0001.000
D49881.0001.000
H3680.9991.000
H7480.9991.000
D18780.9991.000
D25480.9991.000
D44180.9991.000
D53780.9991.000
H13980.9981.000

HPA cancer prognostics

RNA cancer specificity: Cancer enhanced (Testicular Germ Cell Tumor)

Disease associations

OMIM: gene MIM:176980 | disease phenotypes: MIM:605361

GenCC curated gene-disease

1 curated gene-disease records:

DiseaseClassificationInheritanceRecords
spinocerebellar ataxia type 14DefinitiveAutosomal dominant4

Genomics England panels (PanelApp)

Clinical diagnostic gene panels including this gene (8 panels, 5 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.

8 panels:

PanelRating
Adult-onset neurological disordersgreen
Ataxia and cerebellar anomalies - childhood onsetgreen
Hereditary ataxiagreen
Hereditary ataxia and cerebellar anomalies, childhood onsetgreen
Hereditary ataxia, adult onsetgreen
Dystonia, chorea or related movement disorder, childhood onsetamber
Hereditary neuropathyamber
Hereditary neuropathy or pain disorderamber

Mondo (3): spinocerebellar ataxia type 14 (MONDO:0011540), hereditary ataxia (MONDO:0100309), frontotemporal dementia (MONDO:0017276)

Orphanet (3): Spinocerebellar ataxia type 14 (Orphanet:98763), Hereditary ataxia (Orphanet:183518), Frontotemporal dementia (Orphanet:282)

HPO phenotypes

30 phenotypes (HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000317Facial myokymia
HP:0000639Nystagmus
HP:0000640Gaze-evoked nystagmus
HP:0000716Depression
HP:0001152Saccadic smooth pursuit interruptions
HP:0001260Dysarthria
HP:0001268Mental deterioration
HP:0001272Cerebellar atrophy
HP:0001290Generalized hypotonia
HP:0001310Dysmetria
HP:0001336Myoclonus
HP:0001337Tremor
HP:0001347Hyperreflexia
HP:0002015Dysphagia
HP:0002063Rigidity
HP:0002066Gait ataxia
HP:0002070Limb ataxia
HP:0002073Progressive cerebellar ataxia
HP:0002354Memory impairment
HP:0002600Hyporeflexia of lower limbs
HP:0003474Somatic sensory dysfunction
HP:0003677Slowly progressive
HP:0003829Typified by incomplete penetrance
HP:0004373Focal dystonia
HP:0005109Abnormal Achilles tendon morphology
HP:0006855Cerebellar vermis atrophy
HP:0006938Impaired vibration sensation at ankles
HP:0007018Attention deficit hyperactivity disorder
HP:0100543Cognitive impairment

MeSH disease descriptors

3 disease descriptors:

DescriptorNameTree numbers
D057180Frontotemporal DementiaC10.228.140.380.266.299; C10.574.950.300.299; C18.452.845.800.300.299; F03.615.400.380.299
C531684Hereditary spinal ataxia *(supp.)*
C537196Spinocerebellar ataxia 14 *(supp.)*

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL2093867 (PROTEIN FAMILY), CHEMBL2096620 (PROTEIN FAMILY), CHEMBL2938 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 287,227 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

23 molecules by phase:

MoleculeNamePhasePatents
CHEMBL1983268ENTRECTINIB43,737
CHEMBL1863513INGENOL MEBUTATE41,527
CHEMBL608533MIDOSTAURIN47,641
CHEMBL83TAMOXIFEN4173,287
CHEMBL428690ALVOCIDIB328,145
CHEMBL300138ENZASTAURIN33,401
CHEMBL2107337ENZASTAURIN HYDROCHLORIDE3552
CHEMBL38380FASUDIL312,137
CHEMBL91829RUBOXISTAURIN378
CHEMBL265502SURAMIN337,133
CHEMBL1967878CENISERTIB2373
CHEMBL3982723DAROVASERTIB2503
CHEMBL28509EDELFOSINE210,657
CHEMBL1980715LAUROGUADINE2294
CHEMBL362558LY-20903142109
CHEMBL279115PHORBOL MYRISTATE ACETATE21,427
CHEMBL475251R-4062787
CHEMBL565612SOTRASTAURIN21,414
CHEMBL574737UCN-0122,319
CHEMBL3137336UPROSERTIB21,706
CHEMBL1084546PF-005622711
CHEMBL3128043PF-037583091
CHEMBL1980391RG-15301

PharmGKB: 1 entry (CPIC guideline: no)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — Alpha subfamily

Most potent curated ligand interactions (9 total), top 9:

LigandActionAffinityParameter
ingenol mebutateActivation9.79pKi
10-Me-Aplog-1Activation8.26pKi
Gö 6983Inhibition8.22pIC50
balanolInhibition8.0pIC50
GF109203XInhibition7.7pIC50
7-hydroxystaurosporineInhibition7.52pIC50
Ro-32-0432Inhibition7.44pIC50
ruboxistaurinInhibition6.52pIC50
enzastaurinInhibition5.7pIC50

Binding affinities (BindingDB)

400 measured of 521 human assays (544 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
CHEMBL4442196IC500.09 nM
CHEMBL4528495IC500.15 nM
CHEMBL4538431IC500.17 nM
CHEMBL4443190IC500.18 nM
CHEMBL3741746EC500.19 nM
CHEMBL4435580IC500.22 nM
CHEMBL2148106KI0.26 nM
1-[2-(4-methylphenyl)-5-tert-butyl-pyrazol-3-yl]-3-[4-(2-morpholin-4-ylethoxy)naphthalen-1-yl]ureaKD0.37 nM
AplysiatoxinKI0.4 nM
13-Hydroxymethyl-10-isopropyl-9-methyl-5-octyl-3,9,12-triaza-tricyclo[6.6.1.0*4,15*]pentadeca-1,4,6,8(15)-tetraen-11-one (n-octyl-ILV)KI0.5 nM
CHEMBL4587471EC500.55 nM
CHEMBL4575056EC500.6 nM
CHEMBL5175742KI0.65 nM
N-[(1S)-2-(dimethylamino)-1-phenylethyl]-6,6-dimethyl-3-[(2-methylthieno[3,2-d]pyrimidin-4-yl)amino]-1,4-dihydropyrrolo[3,4-d]pyrazole-5-carboxamideIC501 nMUS-8530652: Pyrrolopyrazoles, potent kinase inhibitors
DEMETHOXYDEBROMOAPLYSIATOXINKI1 nM
Compound K-252a(epi)IC501.2 nM
CHEMBL83790IC502.2 nM
corilaginEC503.2 nM
23-ethyl-17,20-dioxa-4,14,23,26-tetraazahexacyclo[24.6.1.17,14.02,6.08,13.027,32]tetratriaconta-1(33),2(6),7(34),8(13),9,11,27(32),28,30-nonaene-3,5-dioneIC504 nM
3-(1-{2-[2-(2-Dimethylamino-ethoxy)-ethoxy]-ethyl}-1H-indol-3-yl)-4-(1-propyl-1H-indol-3-yl)-pyrrole-2,5-dioneIC504 nM
CHEMBL2148108KI4.7 nM
4-[4-[(5-tert-butyl-2-quinolin-6-ylpyrazol-3-yl)carbamoylamino]-3-fluorophenoxy]-N-methylpyridine-2-carboxamideIC505.5 nM
3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-oneIC505.6 nMUS-8822500: Tyrosine kinase inhibitors
17,23-dimethyl-20-oxa-4,14,17,23,26-pentaazahexacyclo[24.6.1.17,14.02,6.08,13.027,32]tetratriaconta-1(33),2(6),7(34),8(13),9,11,27(32),28,30-nonaene-3,5-dioneIC506 nM
Staurosporine, 8IC506.5 nM
NB-506 AnalogueEC508 nM
N-(3-{3-[4-(2-Methoxy-phenyl)-2,5-dioxo-2,5-dihydro-1H-pyrrol-3-yl]-pyrrolo[2,3-b]pyridin-1-yl}-propyl)-formamideIC508 nM
MomelotinibIC508 nMUS-9469613: (N-(cyanomethyl)-4-(2-(4-morpholinophenylamino)pyrimidin-4-yl)benzamide
CHEMBL4465866KD8 nM
CHEMBL4576489KD8 nM
4-(2-Carboxy-6-hydroxy-benzoyl)-3,5-dihydroxy-benzoic acid (1R,2R,4S)-2-(4-hydroxy-benzoylamino)-4-hydroxymethyl-cyclopentyl esterIC5010 nM
3-(2-Chloro-phenyl)-4-[1-(3-hydroxy-propyl)-1H-pyrrolo[2,3-b]pyridin-3-yl]-pyrrole-2,5-dioneIC5010 nM
CHEMBL329274IC5010 nM
4-(2-Carboxy-6-hydroxy-benzoyl)-3,5-dihydroxy-benzoic acid (3S,5R)-2-((S)-4-hydroxy-benzoylamino)-4-hydroxymethyl-cyclopentyl esterIC5010 nM
Butyric acid (1aR,1bS,4aS,7aR,7bR,8R,9R,9aS)-9-butyryloxy-7b-hydroxy-3-hydroxymethyl-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl esterKI14 nM
N-(3-{3-[4-(2-Methoxy-phenyl)-2,5-dioxo-2,5-dihydro-1H-pyrrol-3-yl]-pyrrolo[2,3-b]pyridin-1-yl}-propyl)-methanesulfonamideIC5014 nM
8-Dec-1-ynyl-5-hydroxymethyl-2-isopropyl-1-methyl-1,4,5,6-tetrahydro-2H-benzo[e][1,4]diazocin-3-oneKI15 nM
3-(2-Chloro-phenyl)-4-[1-(3-dimethylamino-propyl)-1H-pyrrolo[2,3-b]pyridin-3-yl]-pyrrole-2,5-dioneIC5015 nM
CHEMBL2148107KI15 nM
[2-(Hydroxymethyl)-4-(methylethylidene)-5-oxo-2-2,3-dihydrofuryl]methyl 4-[2-(4-Methylphenyl)ethynyl]benzoateKI16 nM
CHEMBL4441825IC5016 nM
NB-506 AnalogueEC5017 nM
3-methoxy-2-methyl-4-methylamino-(2S,3S,4S,6R)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8(13),9,11,14(28),15(19),20(27),21,23,25-nonaen-16-oneIC5018 nM
(Rebeccamycin)1,11-dichloro-12-(3,4-dihydroxy-6-hydroxymethyl-5-methoxytetrahydro-2H-2-pyranyl)-6,7,12,13-tetrahydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7-dioneIC5019 nM
4-(2-Carboxy-6-hydroxy-benzoyl)-3,5-dihydroxy-benzoic acid (1R,2R,4R)-4-amino-2-(4-hydroxy-benzoylamino)-cyclopentyl esterIC5020 nM
4-(2-Carboxy-6-hydroxy-benzoyl)-3,5-dihydroxy-benzoic acid (1R,2R,4S)-4-aminomethyl-2-(4-hydroxy-benzoylamino)-cyclopentyl esterIC5020 nM
4-(2-Carboxy-6-hydroxy-benzoyl)-3,5-dihydroxy-benzoic acid (1R,2R,4R)-4-aminomethyl-2-(4-hydroxy-benzoylamino)-cyclopentyl esterIC5020 nM
NB-506 AnalogueEC5020 nM
3-(7-Azaindolyl)-4-arylmaleimide analogueIC5020 nM

ChEMBL bioactivities

689 potent at pChembl≥5 of 787 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.10IC500.08nMSTAUROSPORINE
10.05IC500.09nMCHEMBL4442196
9.89IC500.13nMCHEMBL3741746
9.85IC500.14nMCHEMBL4575056
9.82IC500.15nMCHEMBL4528495
9.80Kd0.16nMCHEMBL337834
9.77IC500.17nMCHEMBL4538431
9.74IC500.18nMCHEMBL4443190
9.72EC500.19nMCHEMBL3741746
9.66IC500.22nMCHEMBL4435580
9.44IC500.36nMCHEMBL4587471
9.42Ki0.38nMDEBROMOAPLYSIATOXIN
9.27IC500.542nMSTAUROSPORINE
9.26EC500.55nMCHEMBL4587471
9.22EC500.6nMCHEMBL4575056
9.22IC500.6nMSTAUROSPORINE
9.20Ki0.63nMAPLYSIATOXIN
9.19Ki0.65nMCHEMBL5175742
9.16Ki0.69nMDEMETHOXYDEBROMOAPLYSIATOXIN
9.00IC501nMSTAUROSPORINE
9.00IC501.01nMSTAUROSPORINE
8.92Kd1.19nMCHEMBL27768
8.92Ki1.2nMCHEMBL285801
8.85IC501.43nMSTAUROSPORINE
8.82Kd1.5nMCHEMBL27768
8.82Ki1.5nMCHEMBL337834
8.80Ki1.58nMCHEMBL27768
8.77IC501.7nMCHEMBL291126
8.73Ki1.84nMCHEMBL265998
8.70IC502nMCHEMBL162621
8.70IC502nMSTAUROSPORINE
8.70IC502nMGO-6976
8.66IC502.2nMCHEMBL83790
8.57IC502.7nMSTAUROSPORINE
8.56IC502.76nMSTAUROSPORINE
8.54Ki2.91nMCHEMBL27768
8.52IC503nMSTAUROSPORINE
8.50Ki3.162nMCHEMBL1980995
8.39IC504.1nMUCN-01
8.31Ki4.9nMPHORBOL MYRISTATE ACETATE
8.30IC505nMCHEMBL306427
8.30IC505nMCHEMBL417051
8.30IC505nMCHEMBL421866
8.30IC505nMCHEMBL538718
8.30IC505nMCHEMBL432168
8.30IC505nMCHEMBL307708
8.30IC505nMCHEMBL75661
8.30IC505nMCHEMBL300422
8.28Ki5.3nMBALANOL
8.28Ki5.23nMCHEMBL265998

PubChem BioAssay actives

379 with measured affinity, of 2670 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-12-benzoyloxy-10,11,22-trihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-2-yl]methyl benzoate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0001uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-22-acetyloxy-12-benzoyloxy-10,11-dihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-2-yl]methyl benzoate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0001uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-2-(benzoyloxymethyl)-10,11,22-trihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-12-yl] naphthalene-2-carboxylate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0001uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,25R)-12-benzoyloxy-10,11-dihydroxy-9-(hydroxymethyl)-13,15-dimethyl-22-oxo-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-2-yl]methyl benzoate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0001uM
(2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one165147: Inhibition Protein kinase C (PKC)ic500.0001uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-2-(benzoyloxymethyl)-10,11,22-trihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-12-yl] 4-nitrobenzoate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0002uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-12-benzoyloxy-10,11,22-trihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-propan-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-2-yl]methyl benzoate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0002uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-2-(benzoyloxymethyl)-10,11,22-trihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-12-yl] 4-methoxybenzoate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0002uM
N-[(2S,5S)-5-(hydroxymethyl)-1-methyl-3-oxo-2-propan-2-yl-2,4,5,6-tetrahydro-1,4-benzodiazocin-8-yl]-N’-[(2S,5S)-5-(hydroxymethyl)-1-methyl-3-oxo-2-propan-2-yl-2,4,5,6-tetrahydro-1,4-benzodiazocin-9-yl]tetradecanediamide164011: Binding affinity for human Protein kinase C gamma with [Ca2+]kd0.0002uM
[(1R,2S,4R,5R,6S,7S,9R,10S,11S,12S,13S,14S,15R,22R,25R)-2-(benzoyloxymethyl)-10,11,22-trihydroxy-9-(hydroxymethyl)-13,15-dimethyl-4-prop-1-en-2-yl-8,24,26,27-tetraoxaheptacyclo[12.10.1.14,23.15,23.01,6.07,9.011,25]heptacosan-12-yl] pyridine-4-carboxylate1576882: Agonist activity at Protein kinase C in human MT4 cells infected with HIV-1 NL4-3 assessed as inhibition of viral replication measured on day 3 post-infection by Nano-Glo luciferase assayic500.0004uM
(1S,3R,4S,5S,9R,13S,14R)-13-hydroxy-9-[(1R)-1-hydroxyethyl]-3-[(2S,5S)-5-(3-hydroxyphenyl)-5-methoxypentan-2-yl]-4,14,16,16-tetramethyl-2,6,10,17-tetraoxatricyclo[11.3.1.11,5]octadecane-7,11-dione687831: Inhibition of [3H]PDBu binding to PKCgamma C1A domainki0.0004uM
(1S,3R,4S,5S,9R,13S,14R)-3-[(2S,5S)-5-(2-bromo-5-hydroxyphenyl)-5-methoxypentan-2-yl]-13-hydroxy-9-[(1R)-1-hydroxyethyl]-4,14,16,16-tetramethyl-2,6,10,17-tetraoxatricyclo[11.3.1.11,5]octadecane-7,11-dione517264: Inhibition of [3H]PDBu binding to PKC gamma C1A peptideki0.0006uM
[(1R,2S,6R,10S,11R,13S,15R)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxo-13-tetracyclo[8.5.0.02,6.011,13]pentadeca-3,8-dienyl] 2-naphthalen-1-ylacetate1845945: Displacement of 3H-PDBu from recombinant human PKCgamma incubated for 25 mins by scintillation counter analysiski0.0006uM
(1S,3R,4S,5S,9R,13S,14R)-13-hydroxy-9-[(1R)-1-hydroxyethyl]-3-[(2S)-5-(3-hydroxyphenyl)pentan-2-yl]-4,14,16,16-tetramethyl-2,6,10,17-tetraoxatricyclo[11.3.1.11,5]octadecane-7,11-dione768064: Displacement of [3H]PDBu from PKCgamma C1A domain (unknown origin)ki0.0007uM
(10S,13S)-13-(hydroxymethyl)-9-methyl-5-octyl-10-propan-2-yl-3,9,12-triazatricyclo[6.6.1.04,15]pentadeca-1,4,6,8(15)-tetraen-11-one164025: Displacement of [3H]- PDBu from recombinant PKC gamma expressed in baculoviruski0.0012uM
[(1S,2S,6R,10S,11R,13S,14R,15R)-13-butanoyloxy-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxo-14-tetracyclo[8.5.0.02,6.011,13]pentadeca-3,8-dienyl] butanoate164034: Binding affinity for Protein kinase C gamma C1b domainkd0.0012uM
(15R,16R,18S)-16-(hydroxymethyl)-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaene-3,5-dione155717: In vitro inhibition of protein kinase C (PKC)ic500.0017uM
[(1R,2R,6S,10S,11R,13S,14R,15R)-13-butanoyloxy-1-hydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxo-14-tetracyclo[8.5.0.02,6.011,13]pentadeca-3,8-dienyl] butanoate164039: Displacement of 3[H]PDBu from Protein kinase C gamma C1b domainki0.0018uM
3-(23-methyl-14-oxo-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4,6,8,10,15,17,19,21-nonaen-3-yl)propanenitrile325570: Inhibition of PKCgammaic500.0020uM
[(1S,2S,6R,10S,11R,13S,14R,15R)-13-acetyloxy-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxo-14-tetracyclo[8.5.0.02,6.011,13]pentadeca-3,8-dienyl] tetradecanoate221771: Inhibition of [3H]-phorbol 12,13-dibutyrate (PDBu) binding to human recombinant protein kinase C gammaki0.0049uM
2-[4-[(1R,2R,4S)-4-(aminomethyl)-2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonyl-2,6-dihydroxybenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0050uM
2-[2,6-dihydroxy-4-[(1R,2R,4S)-2-[(4-hydroxybenzoyl)amino]-4-(hydroxymethyl)cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0050uM
2-[4-[(1R,2R,4R)-4-amino-2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonyl-2,6-dihydroxybenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0050uM
2-[2,6-dihydroxy-4-[4-[(4-hydroxyphenyl)methyl]pyrrolidin-3-yl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid163879: Evaluated against recombinant human Protein kinase C gammaic500.0050uM
2-[2,6-dihydroxy-4-[(3R,4R)-3-[(4-hydroxybenzoyl)amino]azepan-4-yl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid254306: Inhibitory constant against protein kinase Cki0.0053uM
(1R,3R,4R,5S,9R,13R)-9-(hydroxymethyl)-3-[4-(3-hydroxyphenyl)butyl]-4,16,16-trimethyl-2,6,10,17-tetraoxatricyclo[11.3.1.11,5]octadecane-7,11-dione687831: Inhibition of [3H]PDBu binding to PKCgamma C1A domainki0.0055uM
[2-(hydroxymethyl)-5-oxo-4-propan-2-ylideneoxolan-2-yl]methyl 4-[2-(4-methylphenyl)ethynyl]benzoate350006: Displacement of [3H]PDBu form human PKCgamma in presence of phosphatidylserineki0.0062uM
2-[4-[(1R,2R,4R)-4-(aminomethyl)-2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonyl-2,6-dihydroxybenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0100uM
2-[2,6-dihydroxy-4-[(1R,2R)-2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0100uM
2-[2,6-dihydroxy-4-[2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid163879: Evaluated against recombinant human Protein kinase C gammaic500.0100uM
(1S,3R,5R,9R,13S,14R)-9-(hydroxymethyl)-3-[4-(3-hydroxyphenyl)butyl]-14,16,16-trimethyl-2,6,10,17-tetraoxatricyclo[11.3.1.11,5]octadecane-7,11-dione687831: Inhibition of [3H]PDBu binding to PKCgamma C1A domainki0.0120uM
[2-(hydroxymethyl)-5-oxo-4-propan-2-ylideneoxolan-2-yl]methyl 4-[4-[2-(4-methylphenyl)ethynyl]phenoxy]butanoate350006: Displacement of [3H]PDBu form human PKCgamma in presence of phosphatidylserineki0.0123uM
2-[2,6-dihydroxy-4-[(3R,4R)-4-[(4-hydroxybenzoyl)amino]pyrrolidin-3-yl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0130uM
(10S,13S)-3-hexyl-13-(hydroxymethyl)-9-methyl-10-propan-2-yl-3,9,12-triazatricyclo[6.6.1.04,15]pentadeca-1,4(15),5,7-tetraen-11-one312185: Displacement of [3H]PDBu from PKCgamma C1A domainki0.0150uM
5-chloro-4-(4-chloro-1-methylpyrazol-5-yl)-N-[(3S,4S,6S)-4-(3,4-difluorophenyl)-6-(2-hydroxyethyl)piperidin-3-yl]furan-2-carboxamide1608042: Inhibition of PKC (unknown origin)ic500.0160uM
(10S,13S)-13-(hydroxymethyl)-9-methyl-10-propan-2-yl-3,9,12-triazatricyclo[6.6.1.04,15]pentadeca-1,4(15),5,7-tetraen-11-one164025: Displacement of [3H]- PDBu from recombinant PKC gamma expressed in baculoviruski0.0194uM
2-[2,6-dihydroxy-4-[(1R,2R)-4-hydroxy-2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0200uM
[(1R,2S,6R,10S,11R,13S,15R)-1,6-dihydroxy-8-(hydroxymethyl)-4,12,12,15-tetramethyl-5-oxo-13-tetracyclo[8.5.0.02,6.011,13]pentadeca-3,8-dienyl] acetate1845945: Displacement of 3H-PDBu from recombinant human PKCgamma incubated for 25 mins by scintillation counter analysiski0.0218uM
(2S,5S)-9-decyl-5-(hydroxymethyl)-1-methyl-2-propan-2-yl-2,4,5,6-tetrahydro-1,4-benzodiazocin-3-one2163933: Activation of PKC in human ACH-2 cells infected with latent HIV-1 assessed as reversal of HIV-1 latency by measuring increase in p24 antigen level incubated for 48 hrs by chemiluminescent enzyme immunoassayec500.0250uM
2-[2,6-dihydroxy-4-[(1R,2R,4R)-4-hydroxy-2-[(4-hydroxybenzoyl)amino]cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0300uM
2-[2,6-dihydroxy-4-[3-[(4-hydroxybenzoyl)amino]azepan-4-yl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid163879: Evaluated against recombinant human Protein kinase C gammaic500.0300uM
3-[1-[3-(dimethylamino)propyl]indol-3-yl]-4-(1H-indol-3-yl)pyrrole-2,5-dione385590: Inhibition of human PKCgammaic500.0300uM
6-[5-[(2S)-2-amino-3-(1H-indol-3-yl)propoxy]-3-pyridinyl]isoquinolin-3-amine1797573: PKA/PKC Kinase Assay from Article 10.1016/j.bmcl.2006.03.041: “Isoquinoline-pyridine-based protein kinase B/Akt antagonists: SAR and in vivo antitumor activity.”ic500.0310uM
4-[[[6-methoxy-4-methyl-5-[3-(trifluoromethyl)phenoxy]quinolin-8-yl]amino]methyl]phenol1180278: Inhibition of PKC (unknown origin) using C1 peptide substrateic500.0350uM
[2-(hydroxymethyl)-5-oxo-4-propan-2-ylideneoxolan-2-yl]methyl 3-[4-[2-(4-methylphenyl)ethynyl]phenoxy]propanoate350006: Displacement of [3H]PDBu form human PKCgamma in presence of phosphatidylserineki0.0350uM
(1S,3R,5R,9R,13R)-9-(hydroxymethyl)-3-[4-(3-hydroxyphenyl)butyl]-16,16-dimethyl-2,6,10,17-tetraoxatricyclo[11.3.1.11,5]octadecane-7,11-dione517264: Inhibition of [3H]PDBu binding to PKC gamma C1A peptideki0.0390uM
2-[2,6-dihydroxy-4-[2-[(4-hydroxyphenyl)methyl]cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid163879: Evaluated against recombinant human Protein kinase C gammaic500.0400uM
2-[2,6-dihydroxy-4-[[(2R,3R)-3-[(4-hydroxybenzoyl)amino]-2-bicyclo[2.2.1]heptanyl]oxycarbonyl]benzoyl]-3-hydroxybenzoic acid164004: Inhibitory concentration against recombinant human Protein kinase C gamma isozymeic500.0400uM
2-[2,6-dihydroxy-4-[(1R,2S)-2-[(4-hydroxyphenyl)methyl]cyclopentyl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid1795485: PKC assay from Article 10.1021/jm960581w: “Synthesis and protein kinase C inhibitory activities of acyclic balanol analogs that are highly selective for protein kinase C over protein kinase A.”ic500.0400uM
2-[2,6-dihydroxy-4-[(3S,4R)-4-[(4-hydroxyphenyl)methyl]pyrrolidin-3-yl]oxycarbonylbenzoyl]-3-hydroxybenzoic acid1795485: PKC assay from Article 10.1021/jm960581w: “Synthesis and protein kinase C inhibitory activities of acyclic balanol analogs that are highly selective for protein kinase C over protein kinase A.”ic500.0400uM

CTD chemical–gene interactions

29 total (human), top 29 by PubMed support.

ChemicalActions (top 5)PubMed papers
Tetradecanoylphorbol Acetatedecreases expression, increases activity, affects localization, decreases reaction4
sodium arseniteaffects splicing, decreases expression2
Diethylhexyl Phthalatedecreases expression, affects reaction, decreases reaction, increases expression2
Valproic Aciddecreases methylation, increases expression2
FR900359decreases phosphorylation1
naringeninaffects localization, decreases reaction1
mezereinaffects cotreatment, decreases expression1
ethyl-p-hydroxybenzoatedecreases expression1
bryostatin 1affects cotreatment, decreases expression1
lipopolysaccharide, Escherichia coli O111 B4affects reaction, decreases reaction, increases expression1
abrineincreases expression1
3-((5-(6-((3-chlorophenyl)amino)pyrazinyl)-3-pyridinyl)amino)-1-propanolaffects binding, decreases activity1
bisphenol Sincreases methylation1
Pioglitazoneincreases expression1
Benzo(a)pyreneincreases methylation1
Butyratesincreases expression1
Chelating Agentsaffects binding, increases expression1
Copperaffects binding, increases expression1
Hydrogen Peroxideaffects expression1
Lithiumaffects binding, decreases reaction1
Pesticidesdecreases methylation1
Smokeincreases expression1
Thiramdecreases activity1
Tretinoinincreases expression1
Triclosanincreases expression1
Aflatoxin B1decreases methylation1
Antirheumatic Agentsdecreases expression1
Okadaic Acidincreases expression1
Sirolimusincreases degradation, affects binding, decreases reaction1

ChEMBL screening assays

627 unique, capped per target: 611 binding, 15 functional, 1 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1000235BindingActivation of PKC in PMA-stimulated human LNCAP cells assessed as ERK phosphorylation at 1 nM to 10 uM by Western blot relative to PMAConformationally constrained analogues of diacylglycerol (DAG). 31. Modulation of the biological properties of diacylgycerol lactones (DAG-lactones) containing rigid-rod acyl groups separated from the core lactone by spacer units of different lengths. — *J Med Chem*
CHEMBL688555FunctionalRetained protein kinase C activity in the presence of 1.25 uM compoundSynthesis and biological activity of novel quaternary ammonium derivatives of alkylglycerols as potent inhibitors of protein kinase C. — *J Med Chem*
CHEMBL4424905ADMETInhibition of human full-length N-terminal His6-tagged PKCgamma expressed in baculovirus infected Sf21 insect cells using Histone H1 as substrateOptimization of an azetidine series as inhibitors of colony stimulating factor-1 receptor (CSF-1R) Type II to lead to the clinical candidate JTE-952. — *Bioorg Med Chem Lett*

Cellosaurus cell lines

12 cell lines: 9 cancer cell line, 3 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1Q5Abcam K-562 PRKCG KOCancer cell lineFemale
CVCL_D1U4Abcam U-87MG PRKCG KOCancer cell lineMale
CVCL_D2LRAbcam Raji PRKCG KOCancer cell lineMale
CVCL_D7YIUbigene A-549 PRKCG KOCancer cell lineMale
CVCL_D8TYUbigene HCT 116 PRKCG KOCancer cell lineMale
CVCL_E4VTKOLF2.1J PRKCG 24.4kbdel DEL/DELInduced pluripotent stem cellMale
CVCL_E7LZKOLF2.1J PRKCG F643L SNV/SNVInduced pluripotent stem cellMale
CVCL_E7M0KOLF2.1J PRKCG F643L SNV/WTInduced pluripotent stem cellMale
CVCL_TG87HAP1 PRKCG (-) 1Cancer cell lineMale
CVCL_TG88HAP1 PRKCG (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

showing 60 of 297 trials:

NCTPhaseStatusTitle
NCT00950196Phase 4COMPLETEDAmantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia
NCT04107740Phase 4COMPLETEDC-Trelin Orally Disintegrated(OD) Tablet 5mg in Ataxia Due to Spinocerebellar Degeneration
NCT00376051Phase 4COMPLETEDSerotonergic Function and Behavioural and Psychological Symptoms of Frontotemporal Dementia
NCT00950430Phase 4ENROLLING_BY_INVITATIONImaging of Brain Amyloid Plaques in the Aging Population
NCT06093126Phase 4RECRUITINGLemborexant for Insomnia in a Patient With Dementia: An N-of-1 Trial
NCT01970098Phase 3COMPLETEDA Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT01970111Phase 3COMPLETEDAn Extension Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT01970124Phase 3COMPLETEDA Long-Term Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT01970137Phase 3COMPLETEDA 24-week Open-label Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT02889302Phase 3COMPLETEDAn Additional Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT03408080Phase 3ACTIVE_NOT_RECRUITINGOpen Pilot Trial of BHV-4157
NCT03701399Phase 3ACTIVE_NOT_RECRUITINGTroriluzole in Adult Participants With Spinocerebellar Ataxia
NCT03901638Phase 3TERMINATEDTllsh2910 for Ataxia and Gut Microbiota Alteration in Patients of Multiple System Atrophy
NCT07040137Phase 3ACTIVE_NOT_RECRUITINGConfirmatory Study 3 of KPS-0373 in Patients With Spinocerebellar Degeneration
NCT00594737Phase 3COMPLETEDOpen Label Pilot Study of the Effects of Memantine on FDG-PET in Frontotemporal Dementia
NCT03682185Phase 3COMPLETEDThe Healthy Patterns Sleep Study
NCT04374136Phase 3TERMINATEDA Phase 3 Study to Evaluate Efficacy and Safety of AL001 in Frontotemporal Dementia (INFRONT-3)
NCT00034242Phase 2COMPLETEDHigh-Dose Intravenous Immunoglobulin to Treat Cerebellar Degeneration
NCT00202397Phase 2COMPLETEDEffect of Riluzole as a Symptomatic Approach in Patients With Chronic Cerebellar Ataxia
NCT00863538Phase 2COMPLETEDPhase II Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT01004016Phase 2COMPLETEDA Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD)
NCT01350440Phase 2COMPLETEDSafety and Efficacy of Intravenous Immune Globulin in Treating Spinocerebellar Ataxia
NCT02540655Phase 2COMPLETEDEfficacy and Safety Study of Stemchymal® in Polyglutamine Spinocerebellar Ataxia
NCT03932669Phase 2COMPLETEDEffect of Nilotinib in Cerebellar Ataxia Patients
NCT04301284Phase 2WITHDRAWNStudy of CAD-1883 for Spinocerebellar Ataxia
NCT05125666Phase 2UNKNOWNEfficacy of Dual Task Training on Children With Ataxia After Medulloblastoma Resection
NCT06397274Phase 2NOT_YET_RECRUITINGStemchymal® for Polyglutamine Spinocerebellar Ataxia
NCT00416169Phase 2COMPLETEDA Pilot Study to Explore the Safety and Tolerability of Galantamine HBr in the Treatment of Pick Complex/Frontotemporal Dementia
NCT01890343Phase 2COMPLETEDImaging Characteristics of Florbetapir 18F in Patients With Frontotemporal Dementia, Alzheimer’s Disease and Normal Controls.
NCT01937013Phase 2COMPLETEDImpact of Emotional Mimicry and Oxytocin on Frontotemporal Dementia
NCT02676843Phase 2COMPLETEDTau PET Imaging With 18F-AV-1451 in Subjects With MAPT Mutations
NCT02862210Phase 2COMPLETEDLow-Dose Lithium for the Treatment of Behavioral Symptoms in Frontotemporal Dementia
NCT03260920Phase 2UNKNOWNIntranasal Oxytocin for Frontotemporal Dementia
NCT03987295Phase 2COMPLETEDA Phase 2 Study to Evaluate Safety of Long-term AL001 Dosing in Frontotemporal Dementia (FTD) Patients (INFRONT-2)
NCT04220021Phase 2ACTIVE_NOT_RECRUITINGSafety and Therapeutic Potential of the FDA-approved Drug Metformin for C9orf72 ALS/FTD
NCT04489017Phase 2COMPLETEDPalmitoylethanolamide Combined With Luteoline in Frontotemporal Dementia Patients. A Randomized Controlled Trial
NCT04937452Phase 2COMPLETEDDopaminergic Therapy for Frontotemporal Dementia Patients
NCT04993755Phase 2COMPLETEDA Phase 2a Study of TPN-101 in Patients With C9ORF72 ALS/FTD
NCT05742698Phase 2TERMINATEDNabilone for Agitation in Frontotemporal Dementia
NCT06604520Phase 2RECRUITINGVortioxetine for the Treatment of Mood and Cognitive Symptoms in Frontotemporal Dementia
NCT07154485Phase 2NOT_YET_RECRUITINGInvestigator Initiated Study for the Safety and Efficacy in Frontotemporal Dementia
NCT00683943Phase 1COMPLETEDLithium Treatment for Patients With Spinocerebellar Ataxia Type I
NCT02287064Phase 1UNKNOWNAn Open-label Trial of Intravenous Immune Globulin (IVIG)in Treating Spinocerebellar Ataxias
NCT05157802Phase 1UNKNOWNPromoting Physical Activity Engagement for People With Early-stage Cerebellar Ataxia
NCT01386333Phase 1COMPLETEDSafety Study of Intranasal Oxytocin in Frontotemporal Dementia
NCT03040713Phase 1COMPLETEDFlortaucipir PET Imaging in Subjects With FTD
NCT03636204Phase 1COMPLETEDA First in Human Study in Healthy Volunteers and in Participants With Frontotemporal Dementia With Granulin (GRN) Mutation
NCT05315661Phase 1ACTIVE_NOT_RECRUITINGThe Safety and The Efficacy Evaluation of ET-STEM in Patients With Frontotemporal Dementia
NCT06705192Phase 1COMPLETEDStudy in Asymptomatic GRN-FTD Patients to Investigate the Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of VES001
NCT01793168Not specifiedRECRUITINGRare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford
NCT01104649Phase 2/3COMPLETEDEfficacy of Riluzole in Hereditary Cerebellar Ataxia
NCT02960893Phase 2/3COMPLETEDTrial in Adult Participants With Spinocerebellar Ataxia (SCA)
NCT00244361Phase 1/2COMPLETEDEffectiveness of Rituximab in Pediatric OMS Patients.
NCT01649687Phase 1/2COMPLETEDTreatment of Cerebellar Ataxia With Mesenchymal Stem Cells
NCT01958177Phase 1/2UNKNOWNClinical Study to Evaluate the Safety and Efficacy BMMNC in Cerebellar Ataxia
NCT02829268Phase 1/2COMPLETEDA Clinical Trial of Dantrolene Sodium in Pediatric and Adult Patients With Wolfram Syndrome
NCT00001324Not specifiedCOMPLETEDPET Scan to Study Brain Control of Human Movement
NCT00006492Not specifiedCOMPLETEDGluten-Free Diet in Patients With Gluten Sensitivity and Cerebellar Ataxia
NCT00136630Not specifiedCOMPLETEDNatural History, Genetic Bases and Phenotype-genotype Correlations in Autosomal Dominant Spinocerebellar Degenerations
NCT00140829Not specifiedCOMPLETEDSPATAX: Clinical and Genetic Analysis of Cerebellar Ataxias and Spastic Paraplegias

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for PRKCG across ~30M SureChEMBL compounds — explore on Sugi Predict.