PRLR
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Summary
PRLR (prolactin receptor, HGNC:9446) is a protein-coding gene on chromosome 5p13.2, encoding Prolactin receptor (P16471). This is a receptor for the anterior pituitary hormone prolactin (PRL).
This gene encodes a receptor for the anterior pituitary hormone, prolactin, and belongs to the type I cytokine receptor family. Prolactin-dependent signaling occurs as the result of ligand-induced dimerization of the prolactin receptor. Several alternatively spliced transcript variants encoding different membrane-bound and soluble isoforms have been described for this gene, which may function to modulate the endocrine and autocrine effects of prolactin in normal tissue and cancer.
Source: NCBI Gene 5618 — RefSeq curated summary.
At a glance
- Gene–disease (curated): familial hyperprolactinemia (Supportive, GenCC)
- GWAS associations: 10
- Clinical variants (ClinVar): 99 total — 3 pathogenic, 1 likely-pathogenic
- GTEx eGene: eQTL in 20 tissues, sQTL in 1 (q < 0.05)
- Phenotypes (HPO): 16
- Constraint (gnomAD): pLI 1.00 (loss-of-function intolerant), LOEUF 0.44 (moderately constrained)
- MANE Select transcript:
NM_000949 - Notable: 99 clinical variants but no curated precision-oncology (CIViC) evidence yet
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9446 |
| Approved symbol | PRLR |
| Name | prolactin receptor |
| Location | 5p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000113494 |
| Ensembl biotype | protein_coding |
| OMIM | 176761 |
| Entrez | 5618 |
Gene structure
Transcript identifiers
Ensembl transcripts: 27 — 22 protein_coding, 4 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
MANE Select: ENST00000618457
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 10, TSL 2: 1, TSL 3: 3, TSL 4: 1, TSL 5: 5
ENST00000618457, ENST00000231423, ENST00000310101, ENST00000348262, ENST00000397391, ENST00000503330, ENST00000504500, ENST00000508107, ENST00000509140, ENST00000509839, ENST00000509934, ENST00000511486, ENST00000513753, ENST00000514088, ENST00000514206, ENST00000515839, ENST00000542609, ENST00000618625, ENST00000619676, ENST00000620785, ENST00000852369, ENST00000852370, ENST00000852371, ENST00000852372, ENST00000852373, ENST00000998606, ENST00001132364
RefSeq mRNA: 6 — MANE Select: NM_000949
NM_000949, NM_001204314, NM_001204315, NM_001204316, NM_001204317, NM_001204318
CCDS: CCDS3909, CCDS56358, CCDS56359, CCDS56360, CCDS56361, CCDS56362
Canonical transcript exons
ENST00000618457 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001209814 | 35089551 | 35089663 |
| ENSE00001267139 | 35118061 | 35118122 |
| ENSE00001793279 | 35086208 | 35086340 |
| ENSE00003490130 | 35068216 | 35068285 |
| ENSE00003506299 | 35068779 | 35068878 |
| ENSE00003587122 | 35070124 | 35070265 |
| ENSE00003607697 | 35072575 | 35072744 |
| ENSE00003718395 | 35230268 | 35230487 |
| ENSE00003742082 | 35084470 | 35084639 |
| ENSE00003850479 | 35055702 | 35066102 |
Expression profiles
Bgee: expression breadth ubiquitous, 200 present calls, max score 92.39.
FANTOM5 (CAGE): breadth broad, TPM avg 3.3165 / max 230.3872, expressed in 493 samples.
Highest expression (Bgee): placenta, choroid plexus epithelium, seminal vesicle, endocervix, decidua.
Genetic regulation across tissues (GTEx eQTL / sQTL)
PRLR is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 20 tissues and its splicing (sQTL) in 1 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 21 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Brain Caudate basal ganglia | eqtl | 7.0e-19 | +0.35 | 5:35202989:C:T |
| Brain Nucleus accumbens basal ganglia | eqtl | 4.1e-17 | +0.36 | 5:35222715:A:C |
| Cells EBV-transformed lymphocytes | eqtl | 4.6e-12 | +0.30 | 5:35312270:T:C |
| Esophagus Mucosa | eqtl | 3.8e-09 | +0.36 | 5:35465883:C:A |
| Brain Putamen basal ganglia | eqtl | 9.3e-09 | +0.32 | 5:35189522:A:G |
| Testis | eqtl | 5.4e-07 | +0.31 | 5:35168043:C:T |
| Adrenal Gland | eqtl | 6.1e-07 | -0.81 | 5:35247830:A:G |
| Skin Sun Exposed Lower leg | eqtl | 1.2e-06 | -0.27 | 5:35431533:T:C |
| Lung | eqtl | 1.8e-04 | +0.24 | 5:35239357:T:A |
| Artery Aorta | eqtl | 3.6e-04 | +0.99 | 5:35247855:T:C |
| Colon Transverse | eqtl | 4.1e-04 | -0.23 | 5:35195645:A:AC |
| Nerve Tibial | eqtl | 7.5e-04 | +0.18 | 5:35397256:A:C |
| Artery Tibial | eqtl | 1.7e-03 | +0.71 | 5:35228598:T:C |
| Prostate | eqtl | 3.5e-03 | +0.42 | 5:35474392:G:A |
| Skin Not Sun Exposed Suprapubic | eqtl | 3.7e-03 | -0.21 | 5:35431533:T:C |
| Stomach | eqtl | 4.2e-03 | -0.12 | 5:35237634:T:C |
| Liver | eqtl | 2.1e-02 | +0.19 | 5:35347260:C:A |
| Thyroid | eqtl | 2.5e-02 | +0.74 | 5:35267955:C:T |
| Adrenal Gland | sqtl | 2.8e-02 | -0.50 | 5:35449879:T:C |
| Adipose Subcutaneous | eqtl | 3.9e-02 | +0.22 | 5:35184256:G:A |
FANTOM5 promoters
showing 10 of 16 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 61271 | 1.7771 | 341 |
| 61272 | 0.6139 | 214 |
| 61269 | 0.2880 | 127 |
| 61261 | 0.1217 | 13 |
| 61267 | 0.1015 | 19 |
| 61257 | 0.0940 | 44 |
| 61265 | 0.0814 | 38 |
| 61260 | 0.0574 | 12 |
| 61273 | 0.0506 | 22 |
| 61270 | 0.0457 | 15 |
Top tissues by expression
showing 100 of 285 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| placenta | UBERON:0001987 | 92.39 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 90.72 | gold quality |
| seminal vesicle | UBERON:0000998 | 89.48 | gold quality |
| endocervix | UBERON:0000458 | 85.03 | gold quality |
| decidua | UBERON:0002450 | 83.02 | gold quality |
| left adrenal gland | UBERON:0001234 | 82.90 | gold quality |
| jejunal mucosa | UBERON:0000399 | 82.51 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 82.45 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 82.37 | gold quality |
| right adrenal gland | UBERON:0001233 | 82.32 | gold quality |
| adrenal cortex | UBERON:0001235 | 81.88 | gold quality |
| ectocervix | UBERON:0012249 | 81.69 | gold quality |
| body of uterus | UBERON:0009853 | 81.66 | gold quality |
| endometrium | UBERON:0001295 | 81.47 | gold quality |
| adrenal gland | UBERON:0002369 | 81.25 | gold quality |
| uterus | UBERON:0000995 | 80.12 | gold quality |
| mammary duct | UBERON:0001765 | 78.59 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 78.43 | gold quality |
| myometrium | UBERON:0001296 | 78.33 | gold quality |
| uterine cervix | UBERON:0000002 | 77.87 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 77.51 | gold quality |
| cauda epididymis | UBERON:0004360 | 77.07 | gold quality |
| duodenum | UBERON:0002114 | 76.83 | gold quality |
| rectum | UBERON:0001052 | 76.82 | gold quality |
| corpus epididymis | UBERON:0004359 | 76.00 | gold quality |
| kidney | UBERON:0002113 | 75.84 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 75.71 | gold quality |
| mammary gland | UBERON:0001911 | 75.68 | gold quality |
| liver | UBERON:0002107 | 75.59 | gold quality |
| female reproductive system | UBERON:0000474 | 75.50 | gold quality |
| ileal mucosa | UBERON:0000331 | 75.25 | silver quality |
| mucosa of sigmoid colon | UBERON:0004993 | 75.19 | gold quality |
| skin of hip | UBERON:0001554 | 74.95 | gold quality |
| colonic mucosa | UBERON:0000317 | 73.97 | gold quality |
| islet of Langerhans | UBERON:0000006 | 72.50 | gold quality |
| jejunum | UBERON:0002115 | 72.37 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 72.21 | gold quality |
| lower lobe of lung | UBERON:0008949 | 71.84 | gold quality |
| pancreas | UBERON:0001264 | 71.78 | gold quality |
| body of pancreas | UBERON:0001150 | 71.74 | gold quality |
| pituitary gland | UBERON:0000007 | 71.56 | gold quality |
| right lobe of liver | UBERON:0001114 | 71.47 | gold quality |
| calcaneal tendon | UBERON:0003701 | 70.81 | gold quality |
| periodontal ligament | UBERON:0008266 | 70.33 | gold quality |
| vagina | UBERON:0000996 | 70.15 | gold quality |
| diaphragm | UBERON:0001103 | 70.00 | gold quality |
| adenohypophysis | UBERON:0002196 | 69.96 | gold quality |
| mammalian vulva | UBERON:0000997 | 69.81 | gold quality |
| adrenal tissue | UBERON:0018303 | 69.58 | gold quality |
| sperm | CL:0000019 | 69.50 | silver quality |
| upper leg skin | UBERON:0004262 | 68.75 | gold quality |
| male germ cell | CL:0000015 | 68.00 | silver quality |
| buccal mucosa cell | CL:0002336 | 67.88 | gold quality |
| caput epididymis | UBERON:0004358 | 67.86 | gold quality |
| oocyte | CL:0000023 | 67.80 | gold quality |
| left ovary | UBERON:0002119 | 67.41 | gold quality |
| monocyte | CL:0000576 | 67.08 | gold quality |
| skin of abdomen | UBERON:0001416 | 67.06 | gold quality |
| pancreatic ductal cell | CL:0002079 | 67.05 | silver quality |
| cervix squamous epithelium | UBERON:0006922 | 66.98 | gold quality |
| nephron tubule | UBERON:0001231 | 66.93 | gold quality |
| small intestine | UBERON:0002108 | 66.92 | gold quality |
| mononuclear cell | CL:0000842 | 66.72 | gold quality |
| stomach | UBERON:0000945 | 66.70 | gold quality |
| endothelial cell | CL:0000115 | 66.68 | silver quality |
| mucosa of paranasal sinus | UBERON:0005030 | 66.56 | silver quality |
| leukocyte | CL:0000738 | 66.41 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 66.34 | silver quality |
| zone of skin | UBERON:0000014 | 66.29 | gold quality |
| kidney epithelium | UBERON:0004819 | 66.04 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 65.93 | gold quality |
| tendon | UBERON:0000043 | 65.90 | gold quality |
| ovary | UBERON:0000992 | 65.84 | gold quality |
| cortex of kidney | UBERON:0001225 | 65.82 | gold quality |
| skin of leg | UBERON:0001511 | 65.75 | gold quality |
| right ovary | UBERON:0002118 | 65.67 | gold quality |
| body of stomach | UBERON:0001161 | 65.23 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 65.18 | gold quality |
| nipple | UBERON:0002030 | 64.90 | silver quality |
| colonic epithelium | UBERON:0000397 | 64.79 | gold quality |
| renal medulla | UBERON:0000362 | 64.69 | gold quality |
| secondary oocyte | CL:0000655 | 64.35 | gold quality |
| fallopian tube | UBERON:0003889 | 63.77 | gold quality |
| metanephros | UBERON:0000081 | 63.55 | gold quality |
| corpus callosum | UBERON:0002336 | 63.54 | gold quality |
| oviduct epithelium | UBERON:0004804 | 63.50 | silver quality |
| fundus of stomach | UBERON:0001160 | 63.48 | gold quality |
| cartilage tissue | UBERON:0002418 | 63.37 | silver quality |
| gall bladder | UBERON:0002110 | 63.08 | gold quality |
| left uterine tube | UBERON:0001303 | 62.90 | gold quality |
| nucleus accumbens | UBERON:0001882 | 62.90 | gold quality |
| cervix epithelium | UBERON:0004801 | 62.54 | gold quality |
| transverse colon | UBERON:0001157 | 62.48 | gold quality |
| intestine | UBERON:0000160 | 62.37 | gold quality |
| cerebellar vermis | UBERON:0004720 | 62.10 | silver quality |
| vena cava | UBERON:0004087 | 61.97 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 61.85 | gold quality |
| saphenous vein | UBERON:0007318 | 61.60 | gold quality |
| gingiva | UBERON:0001828 | 61.21 | silver quality |
| adult organism | UBERON:0007023 | 61.17 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-23 | yes | 2077.26 |
| E-CURD-119 | yes | 31.53 |
| E-ANND-3 | yes | 14.40 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 76 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM |
|---|---|---|
| Choroid plexus | tissue | 1734.0 |
| Parathyroid gland | tissue | 77.7 |
| Placenta | tissue | 47.2 |
| Kidney | tissue | 28.6 |
| Nucleus accumbens | tissue | 26.9 |
| Breast | tissue | 21.7 |
| Endometrium 1 | tissue | 18.7 |
| Cervix | tissue | 18.2 |
| Adrenal gland | tissue | 11.5 |
| Superior colliculi | tissue | 11.1 |
| Liver | tissue | 10.2 |
| Smooth muscle | tissue | 10.1 |
| Epididymis | tissue | 8.8 |
| Medulla oblongata | tissue | 7.9 |
| Seminal vesicle | tissue | 7.7 |
| Small intestine | tissue | 7.6 |
| Hypothalamus | tissue | 7.0 |
| Duodenum | tissue | 6.2 |
| Stomach 1 | tissue | 5.9 |
| Locus coeruleus | tissue | 5.8 |
| Rectum | tissue | 5.4 |
| Colon | tissue | 5.1 |
| Pancreas | tissue | 5.1 |
| Vagina | tissue | 4.6 |
| Periaqueductal gray | tissue | 4.3 |
| Pituitary gland | tissue | 4.0 |
| Septum | tissue | 3.7 |
| Hippocampus | tissue | 3.3 |
| Thalamus | tissue | 3.2 |
| Skin 1 | tissue | 3.0 |
| Pons | tissue | 2.3 |
| Substantia nigra | tissue | 2.3 |
| Caudate putamen | tissue | 2.1 |
| Fallopian tube | tissue | 2.0 |
| Midbrain | tissue | 1.7 |
| Postcentral gyrus | tissue | 1.7 |
| Ovary | tissue | 1.6 |
| Salivary gland | tissue | 1.6 |
| Amygdala | tissue | 1.6 |
| Spinal cord | tissue | 1.5 |
| Prostate | tissue | 1.0 |
| Bone marrow | tissue | 1.0 |
| Basal ganglia | tissue | 0.9 |
| Ventral forebrain | tissue | 0.9 |
| Gallbladder | tissue | 0.8 |
| Corpus callosum | tissue | 0.8 |
| Hippocampal formation | tissue | 0.8 |
| Esophagus | tissue | 0.7 |
| Tongue | tissue | 0.7 |
| Olfactory bulb | tissue | 0.7 |
| Cerebellum | tissue | 0.6 |
| Testis | tissue | 0.5 |
| Cerebral cortex | tissue | 0.5 |
| Adipose tissue | tissue | 0.5 |
| Putamen | tissue | 0.5 |
| Lung | tissue | 0.5 |
| Entorhinal cortex | tissue | 0.5 |
| Retrosplenial and cingulate cortex | tissue | 0.5 |
| Temporal cortex | tissue | 0.5 |
| Occipital cortex | tissue | 0.5 |
Brain sub-regions (HPA Brain Atlas): detected in 189; highest nTPM — Ventromedial nucleus (89.5), Hippocampus, CA3 (60.5), Arcuate nucleus (54.6), Preoptic area (23.5), Corticomedial amygdala (21.1).
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets:
| Target | Regulation |
|---|---|
| FOXO3 | Repression |
Upstream regulators (CollecTRI, top): CEBPB, CEBPG, ESR1, HOXA1, NR1I2, NR5A1, SP1, SP3, STAT5A, STAT5B
miRNA regulators (miRDB)
Targeting PRLR by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 438 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
Functional genomics
gnomAD constraint: pLI 0.999, LOEUF 0.438, missense Z 1.66 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000618457 splits into 3 regions with different missense tolerance; 0 are missense-constrained. Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 5:35,065,092–35,070,168 | 469 / 491.5 | 0.95 | no |
| 5:35,070,169–35,070,211 | 7 / 19.0 | 0.37 | no |
| 5:35,070,212–35,089,620 | 180 / 236.8 | 0.76 | no |
Literature-anchored findings (GeneRIF, showing 40)
- Review: Prolactin receptor signal transduction (PMID:11721697)
- results presented are consistent with a role of the PRL-PRLR system in bone/cartilage formation/repair processes (PMID:11997178)
- Genomic regions containing exons for human prolactin receptor, and 5’-flanking and intronic sequences, were determined and their order was established in chromosome 5p14-13. (PMID:12021177)
- Given its apparent widespread expression, this PRLr isoform may contribute to PRL action. (PMID:12351696)
- Plasma prolactin elevated in exercise and correlated with total prolactin-receptor expression per B lymphocyte. Increase in prolactin-receptor per B lymphocyte in response to exercise. Increased circulating B lymphocytes expressing prolactin receptor. (PMID:12391112)
- Results demonstrate a stimulatory effect of estradiol on the expression of human prolactin receptor mRNA species with alternative exons-1, hE1(3) and hE1(N1)in breast cancer cells. (PMID:12477494)
- To evaluate a possible role of prolactin receptor genes in SLE & MS formed an association study of PRLR SNPs was done. No statistically significant difference in the prolactin allele distribution was observed for any of the tested variations. (PMID:12559630)
- the interaction between Cyclophilin A and the PRLR plays a differential regulatory role in the various signaling pathways leading from the PRLR. (PMID:12668872)
- results demonstrate a direct effect of prolactin, via functional prolactin receptors, in reducing the lipoprotein lipase activity in human adipose tissue (PMID:12679477)
- prolactin signaling is attenuated by phosphorylation of the prolactin receptor on Thr391 (PMID:12819209)
- expression in hepatocytes was maximum in secondary liver cancer, high in obstructive jaundice, and less in cholelithiasis; expression in cholangiocytes was higher than in hepatocytes and was maximum during obstructive jaundice (PMID:12937675)
- data indicate that the prolactin receptor is a novel SCF(beta-TrCP) substrate and implicate beta-TrCP as an important negative regulator of prolactin signaling and cellular responses to this hormone (PMID:15082796)
- A150C (Leu–>Ile) transversion at exon 6 of PRLR was detected.Polymorphism of prolactin receptors might play a role in mammary carcinogenesis (PMID:15119991)
- transactivation occurs through an indirect interaction between erbB2 and prolactin or leptin receptors (PMID:15135067)
- Data support an “induced-fit” model for prolactin receptor binding where binding of the first receptor to human prolactin induces a conformation change in the hormone creating the second receptor-binding site. (PMID:15504038)
- Prolactin receptor mediates the Vav2 and Nek3 interaction. (PMID:15618286)
- Responsiveness of ovarian carcinomas to prolactin suggest that the prolactin/prolactin receptor system may be a new therapeutic target of ovarian carcinomas. (PMID:15700312)
- prolactin binding initiates limited proteasomal cleavage of its receptor, generating a cell-associated fragment containing the extracellular domain; findings described new potential mediator of prolactin action (PMID:16103113)
- phosphorylation of prolactin receptor on Ser349 is decreased in breast cancer cells lines and primary cancer tissue that exhibit stabilization and accumulation of prolactin receptor (PMID:16278670)
- Prolactin acts on the preformed Long Form homodimer to induce active signal transduction, while Short Form heterodimer lacks cytoplasmic sequences essential for activation. (PMID:16556730)
- a novel Estradiol-regulated non-estrogen responsive element-dependent transcriptional mechanism that mediates hPRLR expression (PMID:16651265)
- The data suggest that prolactin synergistically augments epidermal growth factor signaling in T47D breast cancer cells at least in part by lessening EGF-induced epidermal growth factor receptor downregulation. (PMID:16785991)
- An analysis of changes in the the expression of the prolactin receptor in liver fibrosis and liver cirrhosis. (PMID:17177141)
- The data revealed a widespread expresion of PRLR in normal and neoplastic human thyroid tissues. (PMID:17525486)
- residual agonism can be abolished either by further disrupting hormone site 2-receptor contacts by N-terminal deletion, as in Del1-9-G129R-human prolactin (hPRL), or by stabilizing hPRL and constraining its intrinsic flexibility, as in G129V-hPRL (PMID:17785459)
- In this comprehensive analysis covering 59 kb of the PRL locus and 210 kb of the PRLR locus, we found no significant association between common variation in these candidate genes and breast cancer risk or plasma PRL levels. (PMID:18053149)
- Results demonstrate that altered extracellular domain conformation, and not just a change in bulk, produces altered conformation of the intracellular signaling region of the receptors. (PMID:18081308)
- The resulting pattern of findings confirmed the hypotheses of the significance of the genes involved in the development of affiliative behaviors in the manifestation of ASD, the strongest results were obtained for allelic associations with the PRLR genes. (PMID:18207134)
- Prolactin promotes phosphorylation of PRLr on Ser349 and accelerates endocytosis of PRLr. Prolactin stimulated PRLr phosphorylation, endocytosis, and degradation in Jak2-null cells reconstituted with wild type Jak2. (PMID:18252943)
- GSK3 beta is a bona fide PRLr kinase that phosphorylates PRLr on Ser(349) and is required for the recognition of PRLr by beta Trcp, as well as for PRLr ubiquitination and degradation (PMID:18316598)
- The results of experiments using forced expression of ubiquitin mutants indicate that PRLr polyubiquitination via K63-linked chains is important for efficient interaction of PRLr with AP2 as well as for efficient internalization. (PMID:18573876)
- Mechanisms controlling PRLR isoform expression in the fallopian tube. (PMID:18596217)
- Prolactin receptor is significantly more expressed in male breast carcinoma than in gynaecomastia, and with different patterns of reactivity, suggesting a role for prolactin in male breast carcinogenesis. (PMID:18613925)
- Autocrine prolactin appears to act as an inducible survival factor in a clonogenic subpopulation of breast cancer cells (PMID:18681966)
- a heterozygous single nucleotide polymorphism in exon 6 of the PrlR gene, encoding Ile(146)–>Leu substitution in its extracellular domain confers constitutive activity to the receptor variant (PMID:18779591)
- Data indicate that src family kinases are key mediators of ligand-initiated prolactin receptor internalization, down-regulation, and signal transduction in breast cancer cells. (PMID:19056863)
- Even a very low level of PRLR expression was found to be sufficient to mediate PRL responsiveness in breast cancer cell lines. (PMID:19153125)
- Results suggest that the prolactin receptor conformation as stabilized by S-S bonds is required for the inhibitory action of S1b on prolactin-induced LF-mediated function and JAK2 association. (PMID:19273600)
- Human mammary epithelial cells harboring degradation-resistant PRLr display accelerated proliferation and increased invasive growth. (PMID:19276348)
- Increased expression of short form 1b prolactin receptor in prostate cancer cells decreases cell growth and cell migration and reduced invasive capacity. (PMID:19739126)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | prlra | ENSDARG00000016570 |
| danio_rerio | prlrb | ENSDARG00000045955 |
| mus_musculus | Prlr | ENSMUSG00000005268 |
| rattus_norvegicus | Prlr | ENSRNOG00000057557 |
Paralogs (23): CRLF1 (ENSG00000006016), IL12RB2 (ENSG00000081985), IL5RA (ENSG00000091181), IL12RB1 (ENSG00000096996), IL27RA (ENSG00000104998), EBI3 (ENSG00000105246), GHR (ENSG00000112964), LIFR (ENSG00000113594), LEPR (ENSG00000116678), CSF3R (ENSG00000119535), CNTFR (ENSG00000122756), IL13RA2 (ENSG00000123496), IL13RA1 (ENSG00000131724), IL6ST (ENSG00000134352), IL11RA (ENSG00000137070), OSMR (ENSG00000145623), IL2RG (ENSG00000147168), IL6R (ENSG00000160712), IL23R (ENSG00000162594), IL31RA (ENSG00000164509), IL3RA (ENSG00000185291), CSF2RA (ENSG00000198223), CRLF2 (ENSG00000205755)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:97763) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 49 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal mammary gland development | 2 |
| decreased body weight | 2 |
| abnormal pup retrieval | 2 |
| reduced male fertility | 2 |
| male infertility | 2 |
| slow postnatal weight gain | 2 |
| delayed bone ossification | 1 |
| decreased bone mineral density | 1 |
| abnormal coat/ hair morphology | 1 |
| abnormal hair cycle | 1 |
| abnormal thyroid gland morphology | 1 |
| abnormal prostate gland epithelium morphology | 1 |
| abnormal lacrimal gland morphology | 1 |
| abnormal maternal nurturing | 1 |
| abnormal circulating calcium level | 1 |
| abnormal lactation | 1 |
| abnormal reproductive system physiology | 1 |
| female infertility | 1 |
| abnormal oogenesis | 1 |
| coarse hair | 1 |
| abnormal bone mineralization | 1 |
| increased circulating parathyroid hormone level | 1 |
| decreased insulin secretion | 1 |
| decreased ovulation rate | 1 |
| abnormal decidualization | 1 |
+24 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Bos taurus | O46600 | 99.1% | Diamond |
| Bos indicus | P79108 | 99.1% | Diamond |
| Macaca mulatta | P79194 | 98.6% | Diamond |
| Papio anubis | Q9XSZ1 | 98.6% | Diamond |
| Ovis aries | Q28575 | 97.5% | Diamond |
| Ailuropoda melanoleuca | Q95JF2 | 93.6% | Diamond |
| Canis lupus familiaris | Q9TU69 | 93.6% | Diamond |
| Cervus elaphus | Q28235 | 91.0% | Diamond |
| Saimiri boliviensis boliviensis | Q95ML5 | 90.9% | Diamond |
| Sus scrofa | P19756 | 90.8% | Diamond |
| Gallus gallus | Q02092 | 90.5% | Diamond |
| Columba livia | Q90375 | 90.5% | Diamond |
| Meleagris gallopavo | Q91094 | 90.0% | Diamond |
| Oryctolagus cuniculus | P19941 | 88.7% | Diamond |
| Cavia porcellus | Q9JI97 | 76.0% | Diamond |
| Oreochromis niloticus | Q91513 | 52.7% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| IL7R | protein-coding | 3575 |
| SPEF2 | protein-coding | 79925 |
| DNAJC21-AS1 | ncRNA | 124900961 |
| DNAJC21 | protein-coding | 134218 |
| AGXT2 | protein-coding | 64902 |
| TTC23L | protein-coding | 153657 |
| BRIX1 | protein-coding | 55299 |
| RAD1 | protein-coding | 5810 |
| CAPSL | protein-coding | 133690 |
Protein
Protein identifiers
Prolactin receptor — P16471 (reviewed: P16471)
All UniProt accessions (8): P16471, D6R9E1, D6R9P5, D6R9V7, D6RAN9, D6RC67, D6RD41, D6RJC8
UniProt curated annotations — full annotation on UniProt →
Function. This is a receptor for the anterior pituitary hormone prolactin (PRL). Acts as a prosurvival factor for spermatozoa by inhibiting sperm capacitation through suppression of SRC kinase activation and stimulation of AKT. Isoform 4 is unable to transduce prolactin signaling. Isoform 6 is unable to transduce prolactin signaling.
Subunit / interactions. Homodimer upon hormone binding. Interacts with SMARCA1. Interacts with GH1. Interacts with CSH. Interacts with NEK3 and VAV2 and this interaction is prolactin-dependent.
Subcellular location. Membrane Secreted.
Tissue specificity. Expressed in breast, placenta, kidney, liver and pancreas.
Disease relevance. Multiple fibroadenomas of the breast (MFAB) [MIM:615554] A benign breast disease marked by lobuloalveolar growth with abnormally high proliferation of the epithelium, and characterized by the presence of more than 3 fibroadenomas in one breast. Fibroadenomas are adenomas containing fibrous tissue. The disease is caused by variants affecting the gene represented in this entry. Hyperprolactinemia (HPRL) [MIM:615555] A disorder characterized by increased levels of prolactin in the blood not associated with gestation or the puerperium. HPRL may result in infertility, hypogonadism, and galactorrhea. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell-surface receptor binding. The box 1 motif is required for JAK interaction and/or activation.
Miscellaneous. Soluble isoform that appears specific for the BT-474 breast cancer cell line. Includes exon 11. Does not transduce prolactin signaling. Produced by deletion of part of exon 10 and frameshift. Does not transduce prolactin signaling. Splices from exon 7 to exon 11. SF1b with deletion of exon 4. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the type I cytokine receptor family. Type 1 subfamily.
Isoforms (9)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P16471-1 | 1 | yes |
| P16471-2 | 2, Delta-S1 | |
| P16471-3 | 3 | |
| P16471-4 | 4, SF1a, Short form 1a | |
| P16471-5 | 5, Intermediate | |
| P16471-6 | 6, SF1b, Short form 1b | |
| P16471-7 | 7, Delta 7/11 | |
| P16471-8 | 8, Delta 4-SF1b | |
| P16471-9 | 9, SF1c, Short form 1c |
RefSeq proteins (6): NP_000940, NP_001191243, NP_001191244, NP_001191245, NP_001191246, NP_001191247 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003528 | Long_hematopoietin_rcpt_CS | Conserved_site |
| IPR003961 | FN3_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR015152 | Growth/epo_recpt_lig-bind | Domain |
| IPR036116 | FN3_sf | Homologous_superfamily |
| IPR050379 | Type-I_Cytokine_Rcpt | Family |
Pfam: PF09067
UniProt features (67 total): strand 20, splice variant 14, helix 8, glycosylation site 3, sequence variant 3, region of interest 3, short sequence motif 2, binding site 2, disulfide bond 2, topological domain 2, turn 2, domain 2, signal peptide 1, chain 1, compositionally biased region 1, transmembrane region 1
Structure
Experimental structures (PDB)
12 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 3N06 | A mutant human Prolactin receptor antagonist H27A in complex with the extracellular … | X-RAY DIFFRACTION | 2 |
| 3NCE | A mutant human Prolactin receptor antagonist H27A in complex with the mutant … | X-RAY DIFFRACTION | 2 |
| 3MZG | Crystal structure of a human prolactin receptor antagonist in complex with the … | X-RAY DIFFRACTION | 2.1 |
| 3N0P | A mutant human Prolactin receptor antagonist H30A in complex with the extracellular … | X-RAY DIFFRACTION | 2.1 |
| 3NCB | A mutant human Prolactin receptor antagonist H180A in complex with the extracellular … | X-RAY DIFFRACTION | 2.1 |
| 3D48 | Crystal structure of a prolactin receptor antagonist bound to the extracellular domain of … | X-RAY DIFFRACTION | 2.5 |
| 3NCC | A human Prolactin receptor antagonist in complex with the mutant extracellular domain … | X-RAY DIFFRACTION | 2.5 |
| 3NCF | A mutant human Prolactin receptor antagonist H30A in complex with the mutant … | X-RAY DIFFRACTION | 2.8 |
| 1BP3 | THE XRAY STRUCTURE OF A GROWTH HORMONE-PROLACTIN RECEPTOR COMPLEX | X-RAY DIFFRACTION | 2.9 |
| 4I18 | Crystal structure of human prolactin receptor complexed with Fab fragment | X-RAY DIFFRACTION | 3.24 |
| 2LFG | Solution structure of the human prolactin receptor ecd domain d2 | SOLUTION NMR | |
| 2N7I | NMR structure of the prolactin receptor transmembrane domain | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P16471-F1 | 61.67 | 0.30 |
Antibody-complex structures (SAbDab)
1 antibodies co-crystallized with this protein: 4I18
Human Protein Atlas
Protein class: Predicted membrane proteins, Predicted intracellular proteins, Disease related genes, FDA approved drug targets, Biotech drugs, Human disease related genes
Protein evidence: Evidence at protein level
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2)
| Position | Role |
|---|---|
| 211 | Zn(2+) |
| 212 | Zn(2+) |
Disulfide bonds (2)
| Type | Positions |
|---|---|
| Disulfide bond | 36–46, 75–86 |
Glycosylation sites (3)
| Type | Positions |
|---|---|
| N-linked (glcnac…) asparagine | 59, 104, 233 |
Function
Pathways and Gene Ontology
Reactome pathways
1 curated (TAS) of 4; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
4 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-982772 | Growth hormone receptor signaling | curated |
| R-HSA-1280215 | Cytokine Signaling in Immune system | — |
| R-HSA-168256 | Immune System | — |
| R-HSA-1170546 | Prolactin receptor signaling | electronic |
MSigDB gene sets: 395 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_DN, GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_REGULATION_OF_PHOSPHORYLATION, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE, GOBP_B_CELL_ACTIVATION, GOZGIT_ESR1_TARGETS_DN, GOBP_MAMMARY_GLAND_EPITHELIUM_DEVELOPMENT, GOBP_GROWTH, GOCC_CELL_SURFACE, GOBP_B_CELL_PROLIFERATION, GOBP_MAMMARY_GLAND_EPITHELIAL_CELL_DIFFERENTIATION
GO Biological Process (12): steroid biosynthetic process (GO:0006694), activation of transmembrane receptor protein tyrosine kinase activity (GO:0007171), embryo implantation (GO:0007566), lactation (GO:0007595), positive regulation of cell population proliferation (GO:0008284), cytokine-mediated signaling pathway (GO:0019221), positive regulation of B cell proliferation (GO:0030890), activation of Janus kinase activity (GO:0042976), negative regulation of apoptotic process (GO:0043066), cellular response to granulocyte macrophage colony-stimulating factor stimulus (GO:0097011), positive regulation of cold-induced thermogenesis (GO:0120162), prolactin signaling pathway (GO:0038161)
GO Molecular Function (8): prolactin receptor activity (GO:0004925), lipid binding (GO:0008289), peptide hormone binding (GO:0017046), protein kinase binding (GO:0019901), cytokine binding (GO:0019955), metal ion binding (GO:0046872), cytokine receptor activity (GO:0004896), protein binding (GO:0005515)
GO Cellular Component (7): extracellular region (GO:0005576), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), endosome lumen (GO:0031904), signaling receptor complex (GO:0043235), membrane (GO:0016020)
Reactome top-level categories
2 top-level categories:
| Category | Pathways |
|---|---|
| Cytokine Signaling in Immune system | 2 |
| Immune System | 1 |
GO top-level categories
50 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| activation of protein kinase activity | 2 |
| cellular response to cytokine stimulus | 2 |
| cytokine-mediated signaling pathway | 2 |
| binding | 2 |
| steroid metabolic process | 1 |
| lipid biosynthetic process | 1 |
| cell surface receptor protein tyrosine kinase signaling pathway | 1 |
| protein-containing complex assembly | 1 |
| multicellular organism development | 1 |
| female pregnancy | 1 |
| reproductive process | 1 |
| body fluid secretion | 1 |
| mammary gland development | 1 |
| milk ejection reflex | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| cell surface receptor signaling pathway | 1 |
| regulation of B cell proliferation | 1 |
| B cell proliferation | 1 |
| positive regulation of lymphocyte proliferation | 1 |
| positive regulation of B cell activation | 1 |
| peptidyl-tyrosine phosphorylation | 1 |
| positive regulation of receptor signaling pathway via JAK-STAT | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| response to granulocyte macrophage colony-stimulating factor | 1 |
| positive regulation of multicellular organismal process | 1 |
| cold-induced thermogenesis | 1 |
| regulation of cold-induced thermogenesis | 1 |
| hormone-mediated signaling pathway | 1 |
| cytokine receptor activity | 1 |
| prolactin signaling pathway | 1 |
| hormone binding | 1 |
| kinase binding | 1 |
| protein binding | 1 |
| cation binding | 1 |
| transmembrane signaling receptor activity | 1 |
| cytokine binding | 1 |
| immune receptor activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| plasma membrane | 1 |
| cell surface | 1 |
| side of membrane | 1 |
| endosome | 1 |
| intracellular organelle lumen | 1 |
| protein-containing complex | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 7 of 27 annotations. The rest are phylogenetic / computational / electronic (IEA).
7 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| activation of Janus kinase activity | BP | direct assay |
| activation of transmembrane receptor protein tyrosine kinase activity | BP | direct assay |
| negative regulation of apoptotic process | BP | direct assay |
| cell surface | CC | direct assay |
| lipid binding | MF | physical interaction |
| peptide hormone binding | MF | physical interaction |
| prolactin receptor activity | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 826 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PRLR | PRL | P01236 | 959 |
| PRLR | CSN2 | P05814 | 784 |
| PRLR | STAT5A | P42229 | 783 |
| PRLR | STAT5B | P51692 | 778 |
| PRLR | CSH1 | P01243 | 755 |
| PRLR | CSH1 | P01243 | 752 |
| PRLR | JAK2 | O60674 | 739 |
| PRLR | SRR | Q9GZT4 | 710 |
| PRLR | PGR | P06401 | 663 |
| PRLR | HSD17B7 | P56937 | 624 |
| PRLR | SOCS2 | O14508 | 582 |
| PRLR | SPEF2 | Q9C093 | 580 |
| PRLR | ESR1 | P03372 | 577 |
| PRLR | FSHR | P23945 | 574 |
| PRLR | OXTR | P30559 | 572 |
IntAct
Human interaction partners of PRLR in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
6 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| INSIG2 | physical association | 0.560 | 3 |
| PLPP6 | physical association | 0.560 | 3 |
| YWHAZ | physical association | 0.400 | 3 |
| H1-1 | physical association | 0.400 | 1 |
| NEK3 | physical association | 0.400 | 1 |
| VAV2 | physical association | 0.400 | 1 |
BioGRID (30 interactions; top human partners by supporting records): CREBBP (Affinity Capture-Western; 3 records), FBXW11 (Affinity Capture-Western; 3 records), TEC (Affinity Capture-Western; 3 records), VAV1 (Reconstituted Complex; 3 records), JAK2 (Affinity Capture-Western; 2 records), PPIA (Affinity Capture-Western; 2 records), BTRC (Affinity Capture-Western), GTF3A (Affinity Capture-Western), HIST1H1A (Cross-Linking-MS (XL-MS)), INSIG2 (Two-hybrid), KIAA1429 (Affinity Capture-RNA), PPAPDC2 (Two-hybrid), PTPN11 (Affinity Capture-Western), SOCS2 (Affinity Capture-Western), SOCS3 (Affinity Capture-Western)
SIGNOR signaling
3 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| GH1 | up-regulates | PRLR | binding |
| PRL | up-regulates | PRLR | binding |
| PRLR | “down-regulates quantity by repression” | FOXO3 | “transcriptional regulation” |
Protein complexes (CORUM) (1)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
1 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| ★ GHR-PRLR complex | 2 | GHR, PRLR |
Ligand–receptor pairs (CellPhoneDB) (1)
Curated ligand–receptor partners (cell-cell communication), distinct from the protein–protein interactions above.
1 ligand–receptor pairs:
| Partner | This gene’s role | Signaling class |
|---|---|---|
| PRL | receptor | Signaling by Prolactin |
Disease & clinical
Genetic variants
Variant evidence for PRLR: 99 ClinVar records (4 pathogenic / likely pathogenic); 10 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
99 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 1 |
| Uncertain significance | 68 |
| Likely benign | 13 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (4)
Showing all 4 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 929748 | NM_000949.7(PRLR):c.851T>G (p.Leu284Trp) | Likely pathogenic | criteria provided, single submitter | 1 |
| 89027 | NM_000949.7(PRLR):c.635A>G (p.His212Arg) | Pathogenic | no assertion criteria provided | 1 |
| 599315 | NM_000949.7(PRLR):c.511C>T (p.Arg171Ter) | Pathogenic | no assertion criteria provided | 1 |
| 599316 | NM_000949.7(PRLR):c.806C>T (p.Pro269Leu) | Pathogenic | no assertion criteria provided | 1 |
Per-variant reference — Sugi Variant
Explore PRLR’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 33 predictions of 1,432):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 5:35066103–35066104 | acceptor_loss | 1.0000 | 3 |
| 5:35070122–35070123 | donor_loss | 1.0000 | 5 |
| 5:35070267 | acceptor_loss | 1.0000 | 3 |
| 5:35070271 | acceptor_gain | 1.0000 | |
| 5:35072573–35072574 | donor_loss | 1.0000 | 5 |
| 5:35084468–35084469 | donor_loss | 1.0000 | 5 |
| 5:35089549–35089550 | donor_loss | 1.0000 | 5 |
| 5:35230267 | donor_loss | 1.0000 | 2 |
| 5:35066103–35066104 | acceptor_loss | 0.9900 | 3 |
| 5:35066106 | acceptor_gain | 0.9900 |
AlphaMissense
663 missense substitutions predicted likely pathogenic (of 4,099 scored), across 188 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| F88 | 8 | 0.965 | 0.997 |
| F44 | 8 | 0.945 | 0.995 |
| D120 | 8 | 0.921 | 0.963 |
| C86 | 7 | 0.994 | 0.998 |
| W48 | 7 | 0.990 | 1.000 |
| C46 | 7 | 0.988 | 0.995 |
| C36 | 7 | 0.986 | 0.997 |
| C75 | 7 | 0.986 | 0.997 |
| W151 | 7 | 0.977 | 0.997 |
| W218 | 7 | 0.960 | 0.993 |
| W96 | 7 | 0.947 | 0.995 |
| S216 | 7 | 0.941 | 0.994 |
| W215 | 7 | 0.935 | 0.989 |
| N107 | 7 | 0.930 | 0.992 |
| W163 | 7 | 0.927 | 0.986 |
| W180 | 7 | 0.915 | 0.988 |
| D77 | 7 | 0.905 | 0.934 |
| W47 | 7 | 0.866 | 0.981 |
| C208 | 7 | 0.837 | 0.992 |
| D211 | 7 | 0.814 | 0.889 |
HPA cancer prognostics
RNA cancer specificity: Group enriched (Breast Invasive Carcinoma, Kidney Chromophobe)
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
1 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Pancreatic Adenocarcinoma (TCGA) | favorable | 0.000701 |
Disease associations
OMIM: gene MIM:176761 | disease phenotypes: MIM:615555
GenCC curated gene-disease
1 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| familial hyperprolactinemia | Supportive | Autosomal dominant | 2 |
Mondo (2): familial hyperprolactinemia (MONDO:0014250), primary ovarian failure (MONDO:0005387)
Orphanet (2): Familial hyperprolactinemia (Orphanet:397685), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
16 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000132 | Menorrhagia |
| HP:0000134 | Female hypogonadism |
| HP:0000141 | Amenorrhea |
| HP:0000789 | Infertility |
| HP:0000870 | Increased circulating prolactin concentration |
| HP:0000876 | Oligomenorrhea |
| HP:0000938 | Osteopenia |
| HP:0000939 | Osteoporosis |
| HP:0008222 | Female infertility |
| HP:0010619 | Fibroadenoma of the breast |
| HP:0011462 | Young adult onset |
| HP:0012886 | Hemorrhagic ovarian cyst |
| HP:0031109 | Agalactia |
| HP:0100829 | Galactorrhea |
GWAS associations
10 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST009391_1512 | Metabolite levels | 6e-83 |
| GCST90000025_810 | Appendicular lean mass | 1e-13 |
| GCST007576_73 | Chronotype | 2e-9 |
| GCST003219_43 | Advanced age-related macular degeneration | 2e-8 |
| GCST008895_2 | Psychotic experience | 3e-8 |
| GCST90093090_2 | DHEAS levels | 2e-7 |
| GCST004251_4 | Paneth cell defects in Crohn’s disease | 2e-6 |
| GCST006248_11 | Response to lurasidone in schizophrenia | 8e-6 |
| GCST009391_1814 | Metabolite levels | 8e-6 |
| GCST009391_740 | Metabolite levels | 9e-6 |
EFO canonical traits (from GWAS)
9 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:1001492 | atrophic macular degeneration |
| EFO:0007963 | abnormal paneth cell measurement |
| EFO:0008328 | chronotype measurement |
| EFO:0005940 | psychotic symptoms |
| EFO:0010464 | beta-aminoisobutyric acid measurement |
| EFO:0010343 | cholesteryl ester 18:0 measurement |
| EFO:0010391 | sphingomyelin 16:0 measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0007001 | dehydroepiandrosterone sulphate measurement |
MeSH disease descriptors
1 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5588 (SINGLE PROTEIN)
PharmGKB: 1 entry (CPIC guideline: no)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Prolactin receptor family
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| prolactin | Agonist | 8.05 | pKd |
Binding affinities (BindingDB)
2 measured of 2 human assays (2 total across all organisms); most potent 2 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Cyclo(ARYQSRVE) | KD | 2000 nM |
| Cyclo(ALYSYRVE) | KD | 3000 nM |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.70 | Kd | 2000 | nM | CHEMBL504608 |
| 5.52 | Kd | 3000 | nM | CHEMBL486199 |
PubChem BioAssay actives
2 with measured affinity, of 3 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[(2S,5S,8S,11S,14S,17S,20S,23S)-14-(3-amino-3-oxopropyl)-8,20-bis[3-(diaminomethylideneamino)propyl]-17-(hydroxymethyl)-11-[(4-hydroxyphenyl)methyl]-5-methyl-3,6,9,12,15,18,21,24-octaoxo-23-propan-2-yl-1,4,7,10,13,16,19,22-octazacyclotetracos-2-yl]propanoic acid | 366992: Binding affinity to human prolactin receptor extracellular binding domain by surface plasmon response | kd | 2.0000 | uM |
| 3-[(2S,5R,8R,11S,14S,17S,20S,23S)-20-[3-(diaminomethylideneamino)propyl]-14-(hydroxymethyl)-11,17-bis[(4-hydroxyphenyl)methyl]-5-methyl-8-(2-methylpropyl)-3,6,9,12,15,18,21,24-octaoxo-23-propan-2-yl-1,4,7,10,13,16,19,22-octazacyclotetracos-2-yl]propanoic acid | 366992: Binding affinity to human prolactin receptor extracellular binding domain by surface plasmon response | kd | 3.0000 | uM |
CTD chemical–gene interactions
52 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | increases expression, affects cotreatment, decreases expression | 7 |
| Benzo(a)pyrene | increases methylation, affects methylation, decreases expression | 3 |
| Progesterone | affects cotreatment, decreases expression, increases expression | 3 |
| potassium chromate(VI) | affects cotreatment, decreases expression, increases expression | 2 |
| (+)-JQ1 compound | decreases expression | 2 |
| Formaldehyde | increases expression | 2 |
| Testosterone | increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| methyleugenol | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| methylparaben | increases expression | 1 |
| o,p’-DDT | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| latrunculin A | decreases uptake | 1 |
| butylparaben | increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| glycidamide | decreases expression | 1 |
| chromium hexavalent ion | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | decreases expression | 1 |
| azaspiracid | decreases uptake | 1 |
| clothianidin | decreases expression | 1 |
| 14-deoxy-11,12-didehydroandrographolide | increases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
| Acetaminophen | decreases expression | 1 |
| Glyphosate | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Cadmium | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL980832 | Binding | Binding affinity to human prolactin receptor extracellular binding domain by surface plasmon response | Synthesis and screening of a cyclic peptide library: discovery of small-molecule ligands against human prolactin receptor. — *Bioorg Med Chem* |
Cellosaurus cell lines
7 cell lines: 3 transformed cell line, 2 cancer cell line, 1 spontaneously immortalized cell line, 1 factor-dependent cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E6RI | Genomeditech CHO-K1 H_PRLR | Spontaneously immortalized cell line | Female |
| CVCL_E7I6 | HEK293 HL5 | Transformed cell line | Female |
| CVCL_E7I7 | HEK293 HL10 | Transformed cell line | Female |
| CVCL_E7I8 | HEK293 HL21 | Transformed cell line | Female |
| CVCL_E7I9 | Ba/F3-LP | Factor-dependent cell line | |
| CVCL_TH10 | HAP1 PRLR (-) 1 | Cancer cell line | Male |
| CVCL_TH11 | HAP1 PRLR (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 300 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00541554 | Phase 4 | UNKNOWN | Reversal of Antipsychotic-Induced Hyperprolactinemia, Weight Gain, Hyperglycemia and Dyslipidemia |
| NCT00625950 | Phase 4 | COMPLETED | Endometriosis Patients Undergoing Quinagolide Treatment |
| NCT00889512 | Phase 4 | TERMINATED | The Luveris In Vitro Fertilization Trial |
| NCT01085383 | Phase 4 | COMPLETED | Aripiprazole and Prolactin Study |
| NCT01742390 | Phase 4 | UNKNOWN | A Multicenter Study to Evaluate the Effects of Switching to Aripiprazole 12 Weeks on the Sexual Dysfunction From Risperidone or Paliperidone in Patients With Schizophrenia Spectrum Disorders or Bipolar Spectrum Disorders |
| NCT00000374 | Phase 4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | Phase 4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | Phase 4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | Phase 4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | Phase 4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | Phase 4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | Phase 4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | Phase 4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | Phase 4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | Phase 4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | Phase 4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | Phase 4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | Phase 4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | Phase 4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | Phase 4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | Phase 4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | Phase 4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | Phase 4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | Phase 4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | Phase 4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | Phase 4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | Phase 4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | Phase 4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | Phase 4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | Phase 4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | Phase 4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | Phase 4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | Phase 4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | Phase 4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | Phase 4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | Phase 4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | Phase 4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | Phase 4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | Phase 4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | Phase 4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | Phase 4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | Phase 4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | Phase 4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | Phase 4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | Phase 4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
| NCT00177580 | Phase 4 | COMPLETED | Improving Symptoms of Schizophrenia and Schizoaffective Disorder by Supplementing Medications With Pravastatin |
| NCT00182442 | Phase 4 | COMPLETED | Cognition, Functioning and Quality of Life |
| NCT00182494 | Phase 4 | UNKNOWN | Diabetes Prevention Program in Schizophrenia [DPPS] |
| NCT00183625 | Phase 4 | COMPLETED | Supported Employment and Skills Training in Conjunction With Pharmacotherapy in Schizophrenia Patients |
| NCT00186771 | Phase 4 | UNKNOWN | Magnetic Stimulation as a Treatment for Auditory Hallucinations in Schizophrenia |
| NCT00190749 | Phase 4 | COMPLETED | Safety Study of Olanzapine and a Comparator in Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00191555 | Phase 4 | COMPLETED | Efficacy Study of Switching Stabilized Schizophrenic Patients From Conventional to Atypical Antipsychotic Treatment |
| NCT00194025 | Phase 4 | COMPLETED | Valproate in Late Life Schizophrenia |
| NCT00199940 | Phase 4 | COMPLETED | Safety And Efficacy Study Of Ziprasidone In Pediatric Psychotic Illness |
| NCT00202306 | Phase 4 | COMPLETED | Indicated Prevention of Psychotic Disorders With Low-dose Lithium |
| NCT00203788 | Phase 4 | COMPLETED | Improving Work Outcome in People With Recent-onset Schizophrenia |
| NCT00204061 | Phase 4 | COMPLETED | Early Pharmacological and Psychological Intervention for Late Prodromal States of Psychosis |
| NCT00205660 | Phase 4 | COMPLETED | Changes in Adiposity, Metabolic Measures From Atypicals to Aripiprazole |
| NCT00206102 | Phase 4 | COMPLETED | A Study of the Cataractogenic Potential of Seroquel and Risperdal in the Treatment of Participants With Schizophrenia or Schizoaffective Disorder |
| NCT00208143 | Phase 4 | COMPLETED | Seroquel Therapy for Substance Use Disorders Comorbid With Schizophrenia |
Related Atlas pages
- Associated diseases: familial hyperprolactinemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial hyperprolactinemia, multiple fibroadenoma of the breast, wet macular degeneration