PRNP
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Also known as CD230PRPAltPrP
Summary
PRNP (prion protein (Kanno blood group), HGNC:9449) is a protein-coding gene on chromosome 20p13, encoding Alternative prion protein (F7VJQ1).
The protein encoded by this gene is a membrane glycosylphosphatidylinositol-anchored glycoprotein that tends to aggregate into rod-like structures. The encoded protein contains a highly unstable region of five tandem octapeptide repeats. This gene is found on chromosome 20, approximately 20 kbp upstream of a gene which encodes a biochemically and structurally similar protein to the one encoded by this gene. Mutations in the repeat region as well as elsewhere in this gene have been associated with Creutzfeldt-Jakob disease, fatal familial insomnia, Gerstmann-Straussler disease, Huntington disease-like 1, and kuru. An overlapping open reading frame has been found for this gene that encodes a smaller, structurally unrelated protein, AltPrp. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 5621 — RefSeq curated summary.
At a glance
- Gene–disease (curated): inherited glutathione synthetase deficiency (Definitive, ClinGen) — +7 more curated relationships
- GWAS associations: 63
- Clinical variants (ClinVar): 681 total — 38 pathogenic, 28 likely-pathogenic
- Phenotypes (HPO): 168
- MANE Select transcript:
NM_000311
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9449 |
| Approved symbol | PRNP |
| Name | prion protein (Kanno blood group) |
| Location | 20p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CD230, PRP, AltPrP |
| Ensembl gene | ENSG00000171867 |
| Ensembl biotype | protein_coding |
| OMIM | 176640 |
| Entrez | 5621 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 12 protein_coding
ENST00000379440, ENST00000424424, ENST00000430350, ENST00000457586, ENST00000882184, ENST00000882185, ENST00000882186, ENST00000882187, ENST00000882188, ENST00000967833, ENST00000967834, ENST00000967835
RefSeq mRNA: 6 — MANE Select: NM_000311
NM_000311, NM_001080121, NM_001080122, NM_001080123, NM_001271561, NM_183079
CCDS: CCDS13080
Canonical transcript exons
ENST00000379440 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001957346 | 4686456 | 4686512 |
| ENSE00003892168 | 4699211 | 4701588 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.86.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 163.8198 / max 3287.9914, expressed in 1816 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 183278 | 148.0013 | 1814 |
| 187012 | 33.8498 | 1820 |
| 183277 | 13.2758 | 1452 |
| 183292 | 1.1186 | 563 |
| 183280 | 0.7988 | 511 |
| 183279 | 0.6152 | 386 |
| 187011 | 0.0072 | 2 |
| 187010 | 0.0030 | 1 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| CA1 field of hippocampus | UBERON:0003881 | 99.86 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 99.86 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 99.78 | gold quality |
| endothelial cell | CL:0000115 | 99.76 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 99.76 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 99.75 | gold quality |
| pons | UBERON:0000988 | 99.72 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.72 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 99.72 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 99.70 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.68 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 99.68 | gold quality |
| cerebellar vermis | UBERON:0004720 | 99.66 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 99.65 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 99.64 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 99.64 | gold quality |
| parietal lobe | UBERON:0001872 | 99.60 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 99.60 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 99.59 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 99.59 | gold quality |
| adult organism | UBERON:0007023 | 99.59 | gold quality |
| occipital lobe | UBERON:0002021 | 99.58 | gold quality |
| postcentral gyrus | UBERON:0002581 | 99.58 | gold quality |
| entorhinal cortex | UBERON:0002728 | 99.58 | gold quality |
| olfactory bulb | UBERON:0002264 | 99.56 | gold quality |
| primary visual cortex | UBERON:0002436 | 99.53 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 99.53 | gold quality |
| parietal pleura | UBERON:0002400 | 99.52 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 99.48 | gold quality |
| prefrontal cortex | UBERON:0000451 | 99.47 | gold quality |
Single-cell (SCXA)
Detected in 12 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 81.57 |
| E-HCAD-35 | yes | 51.35 |
| E-HCAD-11 | yes | 38.00 |
| E-GEOD-134144 | yes | 32.95 |
| E-MTAB-8410 | yes | 28.77 |
| E-CURD-46 | yes | 16.54 |
| E-MTAB-8142 | yes | 15.84 |
| E-GEOD-70580 | no | 872.25 |
| E-MTAB-6142 | no | 312.17 |
| E-CURD-112 | no | 2.81 |
| E-MTAB-9543 | no | 2.37 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXO3, HES1, HIF1A, MTF1, NFE2L2, NFKBIB, SP1, TP53, XBP1
miRNA regulators (miRDB)
81 targeting PRNP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
Literature-anchored findings (GeneRIF, showing 40)
- fibrillogenesis of PrP (195-213) (PMID:11559357)
- Huntington disease phenocopy is a familial prion disease (PMID:11593450)
- sporadic–but not variant–Creutzfeldt-Jakob disease is associated with polymorphisms upstream of PRNP exon 1 (PMID:11704923)
- Three novel PrP mutants were examined employing this model system and compared with wild type as well as known mutant PrPs (PMID:11756421)
- Molecular dynamics simulations of wild-type and point mutation human prion protein at normal and elevated temperature. (PMID:11775001)
- colocalized with CBP70 in the nuclear compartment of NB4 cells (PMID:11787070)
- expressed on endothelial cells and is released during apoptosis on membrane microparticles in human plasma (PMID:11961239)
- All-trans retinoic acid down-regulates prion protein expression independently of granulocyte maturation. (PMID:11986958)
- Resting paroxysmal nocturnal hemoglobinuria (CD55(-)) platelets were devoid of surface PrPc, but activation of platelets resulted in the surface expression of PrPc. (PMID:12070046)
- PrP was detected on all major human blood cells types except eosinophils, but was not detected as ubiquitously or uniformly on major blood cell types of different animal species. (PMID:12084159)
- PRPc acquires Proteinase K resistance with structural rearrangement, which can be promoted by the presence of a PrP(Sc) template (PMID:12161431)
- Cell-surface prion protein interacts with glycosaminoglycans (PMID:12186633)
- Spontaneous mutations in the prion protein gene causing transmissible spongiform encephalopathy. (PMID:12205650)
- examined the kinetics of folding and unfolding reactions for the recombinant human prion protein C-terminal fragment 90-231; data provide clear evidence for the population of an intermediate on the refolding pathway of the prion protein (PMID:12356762)
- PrP(C) transfer required the GPI anchor and direct cell to cell contact (PMID:12359724)
- Cellular stress up-regulates both the transcription and translation of PrP through interaction with the HSEs on the PrP gene promoter, resulting in an increase in protein synthesis. (PMID:12392052)
- PRNP missense mutations causing familial Creutzfeldt-Jakob disease recapitulate conserved residues in Doppel: a case of molecular mimicry? (PMID:12459456)
- CD34+ cells from paroxysmal nocturnal hemoglobinuria (PNH) patients are deficient in surface expression of cellular prion protein (PrPc). This may be a suitable system to explore the function of membrane PrP(c) in the hematopoietic system. (PMID:12543108)
- NMR structure of the globular domain with residues 121-230 of a variant human prion protein with two disulfide bonds, hPrP(M166C/E221C), shows the same global fold as wild-type hPrP(121-230) (PMID:12547204)
- detail the schematic construction of PrP(Sc) monomeric and dimeric models (PMID:12568340)
- Mutant PrP is associated with neurodegeneration in prion diseases. (PMID:12590162)
- Review. PrPC is a membrane glycoprotein expressed by most tissues and is attached on the cell membrane by a glycosyl-phosphatidylinositol anchor which would be consistent with roles in cell adhesion, ligand uptake, or transmembrane signaling. (PMID:12645301)
- has different biological properties than linked GPI-anchored protein DAF (PMID:12659837)
- Polymorphism of the codon 129 of the prion protein (PrP) gene and neuropathology of cerebral ageing. (PMID:12679875)
- Neuropathological features of a case with schizophrenia and prion protein gene P102L mutation before onset of Gerstmann-Straussler-Scheinker disease. (PMID:12682740)
- Abbreviated incubation times for human prions in mice expressing a chimeric mouse-human prion protein transgene. (PMID:12684540)
- Kuru imposed strong balancing selection on the Fore, essentially eliminating PRNP 129 homozygotes; worldwide PRNP haplotype diversity and coding allele frequencies suggest strong balancing selection at this locus occurred during evolution of modern humans (PMID:12690204)
- observed that PrP106-126 is a chemoattractant for monocyte-derived immature but not mature dendritic cells; results suggest transactivation of sphingosine-1-phosphate-dependent cell motility by prion protein (PMID:12692258)
- findings highlight the role of PrP in copper homeostasis and hint at its possible role as a modulator of synapses regulated by this trace metal (PMID:12694397)
- plasmin cleaves PrP(c) in vitro and the liberated NH(2)-terminal fragment accelerates plasminogen activation (PMID:12719777)
- The 129 codon polymorphism of the prion protein gene influences earlier cognitive performance in Down syndrome subjects. (PMID:12796830)
- a specific prion protein fragment has a role in disulfide stability by retarding the rate of fibril formation (PMID:12805563)
- proteinase K-resistant C-terminal fragments of PrP are identified in Creutzfeldt-Jakob disease brains (PMID:12917418)
- endoplasmic reticulum-associated degradation PrP is not converted naturally into a form reminiscent of scrapie PrP and that PrP located in the cytosol retains its protective function against Bax (PMID:12917444)
- interactions between small, highly structured RNAs and human recombinant prion protein (PrP) suggest possible roles of RNAs in the modulation of PrP structure and perhaps disease development (PMID:12946346)
- interconversion of helix 1 of the prion protein is rather representing a barrier than a nucleus for the PrPC–>PrPSc conversion (PMID:12952977)
- the intrinsic properties of PrP-(82-146) are dependent upon the integrity of the C-terminal region and account for the massive deposition of PrP amyloid in GSS (PMID:12970341)
- spontaneous conversion of the recombinant polypeptide corresponding to the Y145Stop variant (huPrP23-144) from a monomeric unordered state to a fibrillar form (PMID:14519851)
- PrPc has a role in the signaling of cell-cell contacts in epithelial cells (PMID:14576159)
- association of a common genetic variation in the prion protein gene with cognitive performance (PMID:14593432)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Prnp | ENSMUSG00000079037 |
| rattus_norvegicus | Prnp | ENSRNOG00000021259 |
Protein
Protein identifiers
Alternative prion protein — F7VJQ1 (reviewed: F7VJQ1, P04156)
Alternative names: AltPrP
All UniProt accessions (4): P04156, A2A2V1, Q53YK7, X6RKS3
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Mitochondrion outer membrane.
Tissue specificity. Detected in brain homogenate, primary neurons, and peripheral blood mononuclear cells (at protein level).
Induction. Up-regulated by endoplasmic reticulum stress and proteasomal inhibition.
Miscellaneous. This protein is produced by a bicistronic gene which also produces the major prion protein/PRNP from an overlapping reading frame. The alternative prion protein/AltPrP and PRNP (AC P04156) have no apparent direct functional relation since a mutation that removes the start codon of the AltPrP has no apparent effect on the biology of PRNP. In mouse and hamster, the alternative initiation AUG codon is absent and is replaced by a GUG codon.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| F7VJQ1-1 | 3, AltPrP | yes |
| P04156-1 | 1, PrP |
RefSeq proteins (6): NP_000302, NP_001073590, NP_001073591, NP_001073592, NP_001258490, NP_898902 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000817 | Prion | Family |
| IPR020949 | Prion_copper_b_octapeptide | Repeat |
| IPR022416 | Prion/Doppel_prot_b-ribbon_dom | Domain |
| IPR025860 | Prion_N | Domain |
| IPR036924 | Prion/Doppel_b-ribbon_dom_sf | Homologous_superfamily |
Pfam: PF00377, PF03991, PF11587
UniProt features (89 total): sequence variant 27, strand 19, binding site 12, turn 6, repeat 5, region of interest 4, sequence conflict 3, helix 3, chain 2, glycosylation site 2, transmembrane region 1, signal peptide 1, compositionally biased region 1, propeptide 1, lipid moiety-binding region 1, disulfide bond 1
Structure
Experimental structures (PDB)
70 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2OL9 | X-RAY DIFFRACTION | 0.85 |
| 7RVE | ELECTRON CRYSTALLOGRAPHY | 0.85 |
| 7RVJ | ELECTRON CRYSTALLOGRAPHY | 1 |
| 7RVK | ELECTRON CRYSTALLOGRAPHY | 1 |
| 7RVL | ELECTRON CRYSTALLOGRAPHY | 1 |
| 7RVC | ELECTRON CRYSTALLOGRAPHY | 1 |
| 3MD4 | X-RAY DIFFRACTION | 1.15 |
| 3MD5 | X-RAY DIFFRACTION | 1.4 |
| 4E1H | X-RAY DIFFRACTION | 1.4 |
| 6PQA | X-RAY DIFFRACTION | 1.46 |
| 4KML | X-RAY DIFFRACTION | 1.5 |
| 4N9O | X-RAY DIFFRACTION | 1.5 |
| 6PQ5 | X-RAY DIFFRACTION | 1.5 |
| 3NHC | X-RAY DIFFRACTION | 1.57 |
| 3HAK | X-RAY DIFFRACTION | 1.8 |
| 3HEQ | X-RAY DIFFRACTION | 1.8 |
| 3NVF | X-RAY DIFFRACTION | 1.8 |
| 3HER | X-RAY DIFFRACTION | 1.85 |
| 3NHD | X-RAY DIFFRACTION | 1.92 |
| 1I4M | X-RAY DIFFRACTION | 2 |
| 3HES | X-RAY DIFFRACTION | 2 |
| 3HJX | X-RAY DIFFRACTION | 2 |
| 4E1I | X-RAY DIFFRACTION | 2.03 |
| 3HAF | X-RAY DIFFRACTION | 2.26 |
| 6SV2 | X-RAY DIFFRACTION | 2.3 |
| 6DU9 | X-RAY DIFFRACTION | 2.33 |
| 4DGI | X-RAY DIFFRACTION | 2.4 |
| 6SUZ | X-RAY DIFFRACTION | 2.5 |
| 6LNI | ELECTRON MICROSCOPY | 2.7 |
| 7RL4 | ELECTRON MICROSCOPY | 2.86 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-F7VJQ1-F1 | 68.18 | 0.00 |
| AF-P04156-F1 | 66.12 | 0.09 |
Antibody-complex structures (SAbDab): 6 — 2W9E, 4DGI, 4KML, 4N9O, 6SUZ, 6SV2
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (12): 61; 62; 63; 69; 70; 71; 77; 78; 79; 85; 86; 87
Post-translational modifications (1): 230
Disulfide bonds (1): 179–214
Glycosylation sites (2): 181, 197
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-419037 | NCAM1 interactions |
| R-HSA-9609523 | Insertion of tail-anchored proteins into the endoplasmic reticulum membrane |
MSigDB gene sets: 967 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, GOBP_MEMORY, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, REACTOME_BIOLOGICAL_OXIDATIONS, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, GOBP_COGNITION, GOBP_BEHAVIOR, GOBP_REGULATION_OF_CALCIUM_MEDIATED_SIGNALING, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_NEGATIVE_REGULATION_OF_LEUKOCYTE_PROLIFERATION
GO Biological Process (38): negative regulation of transcription by RNA polymerase II (GO:0000122), intracellular copper ion homeostasis (GO:0006878), response to oxidative stress (GO:0006979), learning or memory (GO:0007611), long-term memory (GO:0007616), negative regulation of protein processing (GO:0010955), protein destabilization (GO:0031648), negative regulation of type II interferon production (GO:0032689), negative regulation of interleukin-17 production (GO:0032700), negative regulation of interleukin-2 production (GO:0032703), intracellular signal transduction (GO:0035556), negative regulation of apoptotic process (GO:0043066), positive regulation of neuron apoptotic process (GO:0043525), negative regulation of activated T cell proliferation (GO:0046007), response to cadmium ion (GO:0046686), positive regulation of calcium-mediated signaling (GO:0050850), negative regulation of T cell receptor signaling pathway (GO:0050860), protein homooligomerization (GO:0051260), regulation of cell cycle (GO:0051726), negative regulation of calcineurin-NFAT signaling cascade (GO:0070885), cellular response to copper ion (GO:0071280), cellular response to xenobiotic stimulus (GO:0071466), positive regulation of protein targeting to membrane (GO:0090314), dendritic spine maintenance (GO:0097062), negative regulation of long-term synaptic potentiation (GO:1900272), regulation of glutamate receptor signaling pathway (GO:1900449), positive regulation of glutamate receptor signaling pathway (GO:1900451), regulation of potassium ion transmembrane transport (GO:1901379), negative regulation of amyloid-beta formation (GO:1902430), negative regulation of dendritic spine maintenance (GO:1902951), negative regulation of amyloid precursor protein catabolic process (GO:1902992), positive regulation of protein localization to plasma membrane (GO:1903078), response to amyloid-beta (GO:1904645), cellular response to amyloid-beta (GO:1904646), regulation of calcium ion import across plasma membrane (GO:1905664), neuron projection maintenance (GO:1990535), regulation of protein localization (GO:0032880), response to copper ion (GO:0046688)
GO Molecular Function (22): amyloid-beta binding (GO:0001540), protease binding (GO:0002020), copper ion binding (GO:0005507), lamin binding (GO:0005521), glycosaminoglycan binding (GO:0005539), microtubule binding (GO:0008017), tubulin binding (GO:0015631), aspartic-type endopeptidase inhibitor activity (GO:0019828), type 5 metabotropic glutamate receptor binding (GO:0031802), signaling receptor activity (GO:0038023), identical protein binding (GO:0042802), ATP-dependent protein binding (GO:0043008), transmembrane transporter binding (GO:0044325), protein-containing complex binding (GO:0044877), protein-folding chaperone binding (GO:0051087), molecular adaptor activity (GO:0060090), molecular function activator activity (GO:0140677), molecular condensate scaffold activity (GO:0140693), cupric ion binding (GO:1903135), cuprous ion binding (GO:1903136), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (19): mitochondrial outer membrane (GO:0005741), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), postsynaptic density (GO:0014069), inclusion body (GO:0016234), extrinsic component of membrane (GO:0019898), dendrite (GO:0030425), nuclear membrane (GO:0031965), terminal bouton (GO:0043195), membrane raft (GO:0045121), extracellular exosome (GO:0070062), postsynapse (GO:0098794), membrane (GO:0016020), side of membrane (GO:0098552)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| NCAM signaling for neurite out-growth | 1 |
| Protein localization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 7 |
| protein binding | 5 |
| negative regulation of cytokine production | 3 |
| intracellular anatomical structure | 3 |
| cytoplasm | 3 |
| membrane | 3 |
| binding | 2 |
| copper ion binding | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| copper ion homeostasis | 1 |
| response to stress | 1 |
| behavior | 1 |
| cognition | 1 |
| memory | 1 |
| protein processing | 1 |
| negative regulation of proteolysis | 1 |
| regulation of protein processing | 1 |
| negative regulation of protein maturation | 1 |
| regulation of protein stability | 1 |
| type II interferon production | 1 |
| regulation of type II interferon production | 1 |
| interleukin-17 production | 1 |
| regulation of interleukin-17 production | 1 |
| interleukin-2 production | 1 |
| regulation of interleukin-2 production | 1 |
| signal transduction | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| positive regulation of apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| negative regulation of T cell proliferation | 1 |
| regulation of activated T cell proliferation | 1 |
| activated T cell proliferation | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
0 interactions, top by confidence:
BioGRID (2594): PRNP (PCA), PRNP (Affinity Capture-Western), ARF1 (Affinity Capture-Western), PRNP (Two-hybrid), CSNK2A1 (Affinity Capture-MS), ZBED3 (Affinity Capture-MS), YWHAQ (Affinity Capture-MS), PABPC1 (Affinity Capture-MS), PABPC4 (Affinity Capture-MS), HSPD1 (Affinity Capture-MS), CYLD (Affinity Capture-MS), HSP90AA1 (Affinity Capture-MS), RPSA (Affinity Capture-MS), PSMD2 (Affinity Capture-MS), CYLD (Affinity Capture-Western)
ESM2 similar proteins: A0A1D9BZF0, A0A1M6T247, A6QL64, B0Y8Y8, C6UYI3, E9Q6E9, F7VJQ1, F7VJQ2, F8W0I5, O77733, P04672, P09125, P0CL27, P0CL28, P0CL29, P0CL30, P0CL31, P0DI83, P0DJ88, P0DJ89, P12347, P13492, P20466, P43537, P49170, P58150, P83059, P83060, P84729, P84730, P84976, Q01456, Q196Z8, Q4WW98, Q4ZJZ1, Q4ZJZ3, Q5JPF3, Q5MJ10, Q5SF96, Q69577
Diamond homologs: F7VJQ1, F7VJQ2, F7VJQ3
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| “ER stress” | up-regulates | PRNP | |
| CDK5 | “up-regulates quantity” | PRNP | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
681 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 38 |
| Likely pathogenic | 28 |
| Uncertain significance | 236 |
| Likely benign | 263 |
| Benign | 36 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1076084 | NM_000178.4(GSS):c.922C>T (p.Gln308Ter) | Pathogenic |
| 13394 | NM_000311.5(PRNP):c.154_177[6_13] | Pathogenic |
| 13395 | NM_000311.5(PRNP):c.305C>T (p.Pro102Leu) | Pathogenic |
| 13396 | NM_000311.5(PRNP):c.350C>T (p.Ala117Val) | Pathogenic |
| 13398 | NM_000311.5(PRNP):c.598G>A (p.Glu200Lys) | Pathogenic |
| 13401 | NM_000311.5(PRNP):c.593T>C (p.Phe198Ser) | Pathogenic |
| 13404 | NM_000311.5(PRNP):c.314C>T (p.Pro105Leu) | Pathogenic |
| 13407 | NM_000311.5(PRNP):c.547A>G (p.Thr183Ala) | Pathogenic |
| 13412 | NM_000311.5(PRNP):c.560A>G (p.His187Arg) | Pathogenic |
| 13413 | NM_000311.5(PRNP):c.313C>A (p.Pro105Thr) | Pathogenic |
| 13414 | NM_000311.5(PRNP):c.398C>T (p.Ala133Val) | Pathogenic |
| 21147 | NM_000311.5(PRNP):c.435T>G (p.Tyr145Ter) | Pathogenic |
| 21148 | NM_000311.5(PRNP):c.478C>T (p.Gln160Ter) | Pathogenic |
| 2702032 | NM_000178.4(GSS):c.1045del (p.Gln349fs) | Pathogenic |
| 2714497 | NM_000178.4(GSS):c.1103_1104del (p.Glu368fs) | Pathogenic |
| 2716943 | NM_000178.4(GSS):c.325C>T (p.Gln109Ter) | Pathogenic |
| 2725232 | NM_000178.4(GSS):c.882C>A (p.Cys294Ter) | Pathogenic |
| 2736963 | NM_000178.4(GSS):c.374G>A (p.Arg125His) | Pathogenic |
| 2756529 | NM_000178.4(GSS):c.527del (p.Ala176fs) | Pathogenic |
| 2792061 | NM_000178.4(GSS):c.587G>A (p.Trp196Ter) | Pathogenic |
| 2793305 | NM_000178.4(GSS):c.658C>T (p.Gln220Ter) | Pathogenic |
| 2815837 | NM_000311.5(PRNP):c.350_351inv (p.Ala117Val) | Pathogenic |
| 2858234 | NM_000178.4(GSS):c.547_550del (p.Asn183fs) | Pathogenic |
| 2877418 | NM_000178.4(GSS):c.49G>T (p.Glu17Ter) | Pathogenic |
| 2903932 | NM_000178.4(GSS):c.588G>A (p.Trp196Ter) | Pathogenic |
| 2976093 | NM_000178.4(GSS):c.105del (p.Ser36fs) | Pathogenic |
| 3014333 | NM_000178.4(GSS):c.1020dup (p.Leu341fs) | Pathogenic |
| 3248261 | NC_000020.10:g.(?33516631)(33517413_?)del | Pathogenic |
| 3637395 | NM_000178.4(GSS):c.37C>T (p.Gln13Ter) | Pathogenic |
| 3699755 | NM_000178.4(GSS):c.14G>A (p.Trp5Ter) | Pathogenic |
SpliceAI
328 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:4699210:GAGCA:G | acceptor_gain | 1.0000 |
| 20:4686512:GGT:G | donor_loss | 0.9900 |
| 20:4686513:G:GA | donor_loss | 0.9900 |
| 20:4686514:T:G | donor_loss | 0.9900 |
| 20:4699209:A:AG | acceptor_gain | 0.9900 |
| 20:4699210:G:GG | acceptor_gain | 0.9900 |
| 20:4699210:GA:G | acceptor_gain | 0.9900 |
| 20:4699210:GAGC:G | acceptor_gain | 0.9900 |
| 20:4691890:G:C | acceptor_gain | 0.9800 |
| 20:4699205:TTGCA:T | acceptor_loss | 0.9700 |
| 20:4699208:CA:C | acceptor_loss | 0.9700 |
| 20:4699208:CAG:C | acceptor_gain | 0.9700 |
| 20:4699209:AGA:A | acceptor_gain | 0.9700 |
| 20:4699209:AGAGC:A | acceptor_loss | 0.9700 |
| 20:4699210:G:GT | acceptor_loss | 0.9700 |
| 20:4699210:GAG:G | acceptor_gain | 0.9700 |
| 20:4686509:GCAG:G | donor_gain | 0.9400 |
| 20:4691895:T:G | acceptor_gain | 0.9400 |
| 20:4693185:T:TA | donor_gain | 0.9400 |
| 20:4693187:T:TG | donor_gain | 0.9300 |
| 20:4699202:A:AG | acceptor_gain | 0.9100 |
| 20:4693184:GTCT:G | donor_gain | 0.9000 |
| 20:4699206:TGCAG:T | acceptor_gain | 0.9000 |
| 20:4686513:G:GG | donor_gain | 0.8900 |
| 20:4699206:T:TA | acceptor_gain | 0.8800 |
| 20:4697449:A:T | donor_gain | 0.8700 |
| 20:4699203:T:G | acceptor_gain | 0.8700 |
| 20:4693186:C:A | donor_gain | 0.8400 |
| 20:4686508:GGCAG:G | donor_gain | 0.8300 |
| 20:4686509:GCAGG:G | donor_gain | 0.8300 |
AlphaMissense
1678 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:4699756:G:A | C179Y | 1.000 |
| 20:4699757:C:G | C179W | 1.000 |
| 20:4699860:T:A | C214S | 1.000 |
| 20:4699861:G:C | C214S | 1.000 |
| 20:4699862:T:G | C214W | 1.000 |
| 20:4699744:T:C | F175S | 0.999 |
| 20:4699744:T:G | F175C | 0.999 |
| 20:4699755:T:A | C179S | 0.999 |
| 20:4699755:T:C | C179R | 0.999 |
| 20:4699756:G:C | C179S | 0.999 |
| 20:4699756:G:T | C179F | 0.999 |
| 20:4699768:C:T | T183I | 0.999 |
| 20:4699860:T:C | C214R | 0.999 |
| 20:4699861:G:A | C214Y | 0.999 |
| 20:4699861:G:T | C214F | 0.999 |
| 20:4699573:C:A | A118D | 0.998 |
| 20:4699743:T:C | F175L | 0.998 |
| 20:4699745:T:A | F175L | 0.998 |
| 20:4699745:T:G | F175L | 0.998 |
| 20:4699768:C:A | T183K | 0.998 |
| 20:4699768:C:G | T183R | 0.998 |
| 20:4699849:T:A | V210D | 0.998 |
| 20:4699642:T:C | F141S | 0.997 |
| 20:4699642:T:G | F141C | 0.997 |
| 20:4699668:T:G | Y150D | 0.997 |
| 20:4699825:A:T | D202V | 0.997 |
| 20:4699611:G:A | G131R | 0.996 |
| 20:4699611:G:C | G131R | 0.996 |
| 20:4699641:T:C | F141L | 0.996 |
| 20:4699643:C:A | F141L | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000275839 (20:4697290 A>G), RS1000293454 (20:4690134 C>T), RS1000601097 (20:4687193 C>T), RS1000896399 (20:4694011 C>A), RS1000904029 (20:4700987 TTC>T), RS1000933016 (20:4701353 G>A), RS1001063640 (20:4701992 A>G), RS1001167786 (20:4686844 C>T), RS1001546486 (20:4687274 T>C,G), RS1001848976 (20:4698429 G>A), RS1002121529 (20:4695820 T>G), RS1002155235 (20:4697310 A>G), RS1002155642 (20:4684855 G>C,T), RS1002366211 (20:4691454 T>C), RS1002553096 (20:4698718 G>A)
Disease associations
OMIM: gene MIM:176640 | disease phenotypes: MIM:266130, MIM:603218, MIM:231900, MIM:137440, MIM:600072, MIM:123400, MIM:606688, MIM:245300, MIM:181500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Gerstmann-Straussler-Scheinker syndrome | Definitive | Autosomal dominant |
| inherited glutathione synthetase deficiency | Definitive | Autosomal recessive |
| inherited Creutzfeldt-Jakob disease | Strong | Autosomal dominant |
| Huntington disease-like 1 | Strong | Autosomal dominant |
| glutathione synthetase deficiency with 5-oxoprolinuria | Strong | Autosomal recessive |
| familial Alzheimer-like prion disease | Supportive | Autosomal dominant |
| PrP systemic amyloidosis | Supportive | Autosomal dominant |
| fatal familial insomnia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| inherited glutathione synthetase deficiency | Definitive | AR |
Mondo (15): glutathione synthetase deficiency with 5-oxoprolinuria (MONDO:0009947), Huntington disease-like 1 (MONDO:0011299), inherited glutathione synthetase deficiency (MONDO:0017909), glutathione synthetase deficiency without 5-oxoprolinuria (MONDO:0009284), vascular dementia (MONDO:0004648), Gerstmann-Straussler-Scheinker syndrome (MONDO:0007656), fatal familial insomnia (MONDO:0010808), inherited Creutzfeldt-Jakob disease (MONDO:0007403), spongiform encephalopathy with neuropsychiatric features (MONDO:0011703), autism spectrum disorder (MONDO:0005258), kuru, susceptibility to (MONDO:0009500), congenital portosystemic shunt (MONDO:0018811), schizophrenia (MONDO:0005090), familial Alzheimer-like prion disease (MONDO:0017233), PrP systemic amyloidosis (MONDO:0018339)
Orphanet (14): Glutathione synthetase deficiency with 5-oxoprolinuria (Orphanet:289846), Huntington disease-like 1 (Orphanet:157941), Glutathione synthetase deficiency (Orphanet:32), Glutathione synthetase deficiency without 5-oxoprolinuria (Orphanet:289849), Gerstmann-Straussler-Scheinker syndrome (Orphanet:356), Fatal familial insomnia (Orphanet:466), Sporadic Creutzfeldt-Jakob disease (Orphanet:204), Inherited human prion disease (Orphanet:280400), Inherited Creutzfeldt-Jakob disease (Orphanet:282166), Acquired Creutzfeldt-Jakob disease (Orphanet:454700), Kuru (Orphanet:454745), Congenital portosystemic shunt (Orphanet:480531), NON RARE IN EUROPE: Autism (Orphanet:106), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
168 total (30 of 168 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000016 | Urinary retention |
| HP:0000298 | Mask-like facies |
| HP:0000496 | Abnormality of eye movement |
| HP:0000504 | Abnormality of vision |
| HP:0000505 | Visual impairment |
| HP:0000514 | Slow saccadic eye movements |
| HP:0000570 | Abnormal saccadic eye movements |
| HP:0000580 | Pigmentary retinopathy |
| HP:0000605 | Supranuclear gaze palsy |
| HP:0000617 | Abnormality of ocular smooth pursuit |
| HP:0000639 | Nystagmus |
| HP:0000651 | Diplopia |
| HP:0000708 | Atypical behavior |
| HP:0000709 | Psychosis |
| HP:0000710 | Hyperorality |
| HP:0000711 | Restlessness |
| HP:0000712 | Emotional lability |
| HP:0000716 | Depression |
| HP:0000718 | Aggressive behavior |
| HP:0000726 | Dementia |
| HP:0000736 | Short attention span |
| HP:0000737 | Irritability |
| HP:0000738 | Hallucinations |
| HP:0000739 | Anxiety |
| HP:0000741 | Apathy |
| HP:0000746 | Delusion |
| HP:0000750 | Delayed speech and language development |
| HP:0000751 | Personality changes |
GWAS associations
63 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000294_2 | Creutzfeldt-Jakob disease | 2.000000e-21 |
| GCST000693_6 | Platelet aggregation | 2.000000e-06 |
| GCST001334_1 | Creutzfeldt-Jakob disease (variant) | 3.000000e-18 |
| GCST001334_2 | Creutzfeldt-Jakob disease (variant) | 5.000000e-07 |
| GCST001366_1 | Prion diseases | 7.000000e-07 |
| GCST001378_9 | Hemostatic factors and hematological phenotypes | 4.000000e-34 |
| GCST002878_1 | Creutzfeldt-Jakob disease (sporadic) | 8.000000e-09 |
| GCST003871_13 | QRS complex (Cornell) | 5.000000e-11 |
| GCST004501_125 | Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) | 3.000000e-06 |
| GCST004502_1 | Waist circumference adjusted for BMI (smoking interaction) | 2.000000e-06 |
| GCST005956_31 | Waist-to-hip ratio adjusted for BMI | 8.000000e-08 |
| GCST005958_16 | Waist-to-hip ratio adjusted for BMI (age >50) | 6.000000e-06 |
| GCST005962_40 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 3.000000e-08 |
| GCST007948_1 | KANNO antigen negativity | 3.000000e-08 |
| GCST008058_164 | Estimated glomerular filtration rate | 1.000000e-44 |
| GCST008103_149 | Bipolar disorder | 3.000000e-06 |
| GCST008163_394 | Height | 2.000000e-06 |
| GCST010142_10 | Fish- and plant-related diet | 8.000000e-12 |
| GCST010796_3401 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-21 |
| GCST010796_3402 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-20 |
| GCST010796_3403 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9.000000e-21 |
| GCST010796_3404 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-21 |
| GCST010796_3405 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-21 |
| GCST010796_3406 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9.000000e-22 |
| GCST010796_3407 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-22 |
| GCST010796_3408 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-22 |
| GCST010796_3409 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-23 |
| GCST010796_3410 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-22 |
| GCST010796_3411 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-23 |
| GCST010796_3412 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-22 |
EFO canonical traits (14, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004503 | hematological measurement |
| EFO:0004633 | protein C measurement |
| EFO:1000656 | sporadic Creutzfeld Jacob disease |
| EFO:0005054 | QRS complex |
| EFO:0007742 | QRS amplitude |
| EFO:0004318 | smoking behavior |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0009949 | KANNO antigen measurement |
| EFO:0008111 | diet measurement |
| EFO:0004327 | electrocardiography |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D015140 | Dementia, Vascular | C10.228.140.300.400; C10.228.140.300.510.800.500; C10.228.140.380.230; C10.228.140.695.500; C14.907.137.126.372.500; C14.907.253.560.350.500; F03.615.400.350 |
| D034062 | Insomnia, Fatal Familial | C01.207.800.392; C10.228.228.800.392; C10.574.843.512; C10.886.425.800.800.400 |
| C535800 | Amyloidosis, Cerebral, with Spongiform Encephalopathy (supp.) | |
| C536835 | Glutathione synthetase deficiency (supp.) | |
| C566398 | Huntington Disease-Like 1 (supp.) | |
| C564678 | Spongiform Encephalopathy with Neuropsychiatric Features (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs17309872 | ACSS2, GSS | 3 | 3.00 | 1 | carboplatin;cisplatin;docetaxel;gemcitabine;paclitaxel |
PubChem BioAssay actives
7 with measured affinity, of 167 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-N-(6-chloro-2-methoxyacridin-9-yl)-1-N,1-N-diethylpentane-1,4-diamine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 0.3000 | uM |
| Chlorpromazine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 2.0000 | uM |
| Chloroquine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 4.0000 | uM |
| N,N-dimethyl-3-phenothiazin-10-ylpropan-1-amine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 5.0000 | uM |
| Acepromazine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 5.0000 | uM |
| Promethazine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 8.0000 | uM |
| Imipramine | 161627: Half maximal inhibition of Prion protein PrPsc formation was assayed in ScN2a cells | ec50 | 10.0000 | uM |
CTD chemical–gene interactions
112 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Copper | affects folding, affects reaction, affects binding, increases reduction, affects cotreatment (+6 more) | 15 |
| Valproic Acid | affects cotreatment, increases expression | 8 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression, affects expression, decreases expression | 7 |
| bisphenol A | increases expression, affects expression, decreases expression | 4 |
| Tretinoin | decreases expression, increases expression | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Acetaminophen | increases expression | 3 |
| Air Pollutants | increases expression, affects expression, increases abundance | 3 |
| Estradiol | affects expression, affects cotreatment, increases expression | 3 |
| Tobacco Smoke Pollution | affects expression, increases expression | 3 |
| Copper Sulfate | affects binding, increases expression, affects localization, increases uptake, decreases reaction | 3 |
| methylmercuric chloride | increases expression | 2 |
| perfluorooctanoic acid | increases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Aerosols | increases expression | 2 |
| Oxygen | decreases reaction, increases expression, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| graphene oxide | decreases expression | 1 |
| ethylbenzene | increases expression | 1 |
| methylselenic acid | increases expression | 1 |
| 3,4-dichloroaniline | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| zinc chromate | increases expression, increases abundance | 1 |
Cellosaurus cell lines
22 cell lines: 18 induced pluripotent stem cell, 3 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0N79 | AG09950 | Transformed cell line | Male |
| CVCL_D2WC | CJD2 | Induced pluripotent stem cell | Female |
| CVCL_D3BK | CJD2CR | Induced pluripotent stem cell | Female |
| CVCL_D3BL | CJD13 | Induced pluripotent stem cell | Female |
| CVCL_D3BM | CJD13CR | Induced pluripotent stem cell | Female |
| CVCL_D3BP | CJD29 | Induced pluripotent stem cell | Female |
| CVCL_D3BQ | CJD3 | Induced pluripotent stem cell | Female |
| CVCL_D3BR | CJD4 | Induced pluripotent stem cell | Male |
| CVCL_D3BS | CJD40 | Induced pluripotent stem cell | Female |
| CVCL_D3BT | CJD5 | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00165763 | PHASE4 | COMPLETED | Efficacy and Safety of Donepezil Hydrochloride (Aricept) in Vascular Dementia |
| NCT00847860 | PHASE4 | COMPLETED | Cilostazol Verse Asprin for Vascular Dementia in Poststroke Patients With White Matter Lesions |
| NCT00947531 | PHASE4 | COMPLETED | A Clinical Trial to Evaluate the Safety and Efficacy of 20 ml Cerebrolysin in Patients With Vascular Dementia |
| NCT00950430 | PHASE4 | ENROLLING_BY_INVITATION | Imaging of Brain Amyloid Plaques in the Aging Population |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT07482085 | PHASE3 | NOT_YET_RECRUITING | Efavirenz for the Treatment of Creutzfeldt-Jakob Disease |
| NCT00099216 | PHASE3 | COMPLETED | Efficacy and Safety of Rivastigmine Capsules in Patients With Probable Vascular Dementia |
| NCT00130338 | PHASE3 | COMPLETED | Rivastigmine Capsules in Patients With Probable Vascular Dementia |
| NCT00209456 | PHASE3 | COMPLETED | Dopamine Transporter Scintigraphy Imaging (DAT-Imaging) in Patients With Lewy Body Dementia |
| NCT00249158 | PHASE3 | COMPLETED | A Study of the Effectiveness and Safety of Risperidone in the Treatment of Behavioral Disturbances in Patients With Dementia |
| NCT00261573 | PHASE3 | COMPLETED | A Study of the Safety and Effectiveness of Galantamine Versus Placebo in the Treatment of Patients With Vascular Dementia or Mixed Dementia |
| NCT00621647 | PHASE3 | COMPLETED | Seroquel- Agitation Associated With Dementia |
| NCT02453932 | PHASE3 | COMPLETED | Efficacy and Safety of Tianzhi Granule in Mild to Moderate Vascular Dementia |
| NCT03682185 | PHASE3 | COMPLETED | The Healthy Patterns Sleep Study |
| NCT03789760 | PHASE3 | COMPLETED | The Clinical Trial of Chinese Herbal Medicine (SaiLuoTong) Capsule |
| NCT03804229 | PHASE3 | ACTIVE_NOT_RECRUITING | Efficacy and Safety of Butylphthalide Soft Capsule for the Treatment of Vascular Dementia |
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Related Atlas pages
- Associated diseases: Gerstmann-Straussler-Scheinker syndrome, inherited glutathione synthetase deficiency, inherited Creutzfeldt-Jakob disease, Huntington disease-like 1, glutathione synthetase deficiency with 5-oxoprolinuria, familial Alzheimer-like prion disease, PrP systemic amyloidosis, fatal familial insomnia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital portosystemic shunt, Creutzfeldt Jacob disease, familial Alzheimer-like prion disease, fatal familial insomnia, Gerstmann-Straussler-Scheinker syndrome, glutathione synthetase deficiency with 5-oxoprolinuria, glutathione synthetase deficiency without 5-oxoprolinuria, Huntington disease-like 1, inherited Creutzfeldt-Jakob disease, inherited glutathione synthetase deficiency, kuru, susceptibility to, prion disease, PrP systemic amyloidosis, spongiform encephalopathy with neuropsychiatric features, vascular dementia