PRR7-AS1

Summary

PRR7-AS1 (PRR7 antisense RNA 1, HGNC:27961) is a long non-coding RNA gene on chromosome 5q35.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27961
Approved symbol	PRR7-AS1
Name	PRR7 antisense RNA 1
Location	5q35.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246334
Ensembl biotype	lncRNA
Entrez	340037
RNAcentral	URS000075C7BA — lncRNA, 1600 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000425316, ENST00000506465, ENST00000511565, ENST00000514846, ENST00000730413, ENST00000730414, ENST00000730415, ENST00000730416, ENST00000730417

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425316 — 4 exons

Exon	Start	End
ENSE00001968397	177439914	177440031
ENSE00001988610	177438503	177438870
ENSE00002029263	177444396	177444594
ENSE00002040653	177447644	177447699

Expression profiles

Bgee: expression breadth ubiquitous, 159 present calls, max score 88.76.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2963 / max 9.7264, expressed in 175 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
65094	0.2188	133
65093	0.0775	27

Top tissues by expression

246 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	88.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.73	gold quality
monocyte	CL:0000576	78.40	gold quality
left testis	UBERON:0004533	77.86	gold quality
right testis	UBERON:0004534	77.65	gold quality
leukocyte	CL:0000738	77.57	gold quality
granulocyte	CL:0000094	75.57	gold quality
colonic epithelium	UBERON:0000397	75.32	gold quality
blood	UBERON:0000178	74.69	gold quality
testis	UBERON:0000473	74.26	gold quality
skin of leg	UBERON:0001511	72.21	gold quality
mucosa of transverse colon	UBERON:0004991	71.67	gold quality
lymph node	UBERON:0000029	70.96	gold quality
cortical plate	UBERON:0005343	70.41	gold quality
spleen	UBERON:0002106	69.87	gold quality
sural nerve	UBERON:0015488	69.85	gold quality
skin of abdomen	UBERON:0001416	69.16	gold quality
anterior cingulate cortex	UBERON:0009835	69.05	gold quality
right frontal lobe	UBERON:0002810	68.39	gold quality
ganglionic eminence	UBERON:0004023	68.04	gold quality
vermiform appendix	UBERON:0001154	67.66	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	67.62	gold quality
zone of skin	UBERON:0000014	67.52	gold quality
cerebellar hemisphere	UBERON:0002245	66.77	gold quality
cerebellar cortex	UBERON:0002129	66.61	gold quality
adrenal tissue	UBERON:0018303	66.58	gold quality
right lung	UBERON:0002167	66.42	gold quality
right hemisphere of cerebellum	UBERON:0014890	66.36	gold quality
Brodmann (1909) area 9	UBERON:0013540	66.28	gold quality
nucleus accumbens	UBERON:0001882	65.94	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.