PRTFDC1
geneOn this page
Also known as HHGP
Summary
PRTFDC1 (phosphoribosyl transferase domain containing 1, HGNC:23333) is a protein-coding gene on chromosome 10p12.1, encoding Phosphoribosyltransferase domain-containing protein 1 (Q9NRG1). Has low, barely detectable phosphoribosyltransferase activity (in vitro).
Enables protein homodimerization activity. Predicted to be involved in purine ribonucleoside salvage. Predicted to be active in cytosol.
Source: NCBI Gene 56952 — RefSeq curated summary.
At a glance
- GWAS associations: 39
- Clinical variants (ClinVar): 53 total
- MANE Select transcript:
NM_020200
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23333 |
| Approved symbol | PRTFDC1 |
| Name | phosphoribosyl transferase domain containing 1 |
| Location | 10p12.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HHGP |
| Ensembl gene | ENSG00000099256 |
| Ensembl biotype | protein_coding |
| OMIM | 610751 |
| Entrez | 56952 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 5 protein_coding
ENST00000320152, ENST00000376376, ENST00000376378, ENST00000897639, ENST00000947509
RefSeq mRNA: 2 — MANE Select: NM_020200
NM_001282786, NM_020200
CCDS: CCDS60506, CCDS7145
Canonical transcript exons
ENST00000320152 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001124245 | 24952528 | 24952606 |
| ENSE00001344057 | 24851388 | 24851464 |
| ENSE00001344061 | 24855318 | 24855364 |
| ENSE00001344065 | 24856913 | 24856995 |
| ENSE00001344069 | 24871998 | 24872063 |
| ENSE00001344073 | 24937184 | 24937367 |
| ENSE00001344078 | 24942330 | 24942436 |
| ENSE00001649958 | 24848614 | 24849891 |
| ENSE00001702650 | 24858392 | 24858409 |
Expression profiles
Bgee: expression breadth ubiquitous, 240 present calls, max score 94.09.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.1667 / max 88.6392, expressed in 1292 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 108706 | 5.9430 | 1279 |
| 205795 | 0.1279 | 45 |
| 108707 | 0.0958 | 54 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 94.09 | gold quality |
| ventricular zone | UBERON:0003053 | 93.96 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.47 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 92.93 | gold quality |
| spinal cord | UBERON:0002240 | 92.48 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 92.30 | gold quality |
| adrenal tissue | UBERON:0018303 | 91.38 | gold quality |
| medulla oblongata | UBERON:0001896 | 91.02 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.81 | gold quality |
| putamen | UBERON:0001874 | 90.80 | gold quality |
| tibia | UBERON:0000979 | 90.70 | gold quality |
| substantia nigra | UBERON:0002038 | 90.60 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 90.57 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 90.42 | gold quality |
| midbrain | UBERON:0001891 | 90.27 | gold quality |
| amygdala | UBERON:0001876 | 90.01 | gold quality |
| nucleus accumbens | UBERON:0001882 | 89.75 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 89.72 | gold quality |
| Ammon’s horn | UBERON:0001954 | 89.49 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 89.44 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.33 | gold quality |
| stromal cell of endometrium | CL:0002255 | 89.29 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 89.07 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 89.07 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 88.96 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 88.88 | gold quality |
| adrenal cortex | UBERON:0001235 | 88.71 | gold quality |
| left adrenal gland | UBERON:0001234 | 88.66 | gold quality |
| temporal lobe | UBERON:0001871 | 88.56 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.53 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.69 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
45 targeting PRTFDC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-556-3P | 99.74 | 68.75 | 1203 |
| HSA-MIR-12124 | 99.68 | 69.17 | 2700 |
| HSA-MIR-1290 | 99.59 | 69.90 | 2079 |
| HSA-MIR-5689 | 99.50 | 71.26 | 1154 |
| HSA-MIR-103A-1-5P | 99.39 | 67.78 | 1545 |
| HSA-MIR-103A-2-5P | 99.39 | 67.72 | 1577 |
| HSA-MIR-4460 | 99.37 | 68.52 | 615 |
| HSA-MIR-6882-5P | 99.35 | 71.13 | 1206 |
| HSA-MIR-3160-5P | 99.28 | 69.07 | 1938 |
| HSA-MIR-4667-3P | 99.26 | 65.45 | 1608 |
| HSA-MIR-4727-5P | 99.23 | 67.55 | 1154 |
| HSA-MIR-8065 | 99.19 | 70.38 | 1289 |
| HSA-MIR-8077 | 99.17 | 66.67 | 862 |
| HSA-MIR-3199 | 99.17 | 65.19 | 696 |
| HSA-MIR-8052 | 99.17 | 65.01 | 719 |
| HSA-MIR-892C-5P | 99.16 | 70.56 | 2116 |
| HSA-MIR-3125 | 99.14 | 68.49 | 2269 |
Literature-anchored findings (GeneRIF, showing 5)
- epigenetic silencing of PRTFDC1 by hypermethylation of the CpG island leads to a loss of PRTFDC1 function, which might be involved in squamous cell oral carcinogenesis. (PMID:17599052)
- The PRTFDC1 structure has been determined at 1.7 A resolution with bound GMP. The overall structure and GMP binding mode are very similar to that observed for HPRT. (PMID:21054786)
- These results demonstrate that PRTFDC1 is a genetic modifier of HPRT-deficiency in the mouse. (PMID:21818316)
- We found evidence for PRTFDC1 as a potential novel PTSD gene, a finding that awaits further replication. (PMID:25456346)
- rs12411980 single-nucleotide polymorphism related to PRTFDC1 expression is significantly associated with phantom tooth pain. (PMID:39093623)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | prtfdc1b | ENSDARG00000011683 |
| danio_rerio | hprt1l | ENSDARG00000014866 |
| danio_rerio | prtfdc1a | ENSDARG00000074528 |
| rattus_norvegicus | Prtfdc1 | ENSRNOG00000024874 |
| drosophila_melanogaster | Pgm1 | FBGN0003076 |
| caenorhabditis_elegans | WBGENE00019890 |
Paralogs (6): PGM3 (ENSG00000013375), PGM1 (ENSG00000079739), PGM5 (ENSG00000154330), PGM2L1 (ENSG00000165434), HPRT1 (ENSG00000165704), PGM2 (ENSG00000169299)
Protein
Protein identifiers
Phosphoribosyltransferase domain-containing protein 1 — Q9NRG1 (reviewed: Q9NRG1)
All UniProt accessions (1): Q9NRG1
UniProt curated annotations — full annotation on UniProt →
Function. Has low, barely detectable phosphoribosyltransferase activity (in vitro). Binds GMP, IMP and alpha-D-5-phosphoribosyl 1-pyrophosphate (PRPP). Is not expected to contribute to purine metabolism or GMP salvage.
Subunit / interactions. Homodimer.
Similarity. Belongs to the purine/pyrimidine phosphoribosyltransferase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NRG1-1 | 1 | yes |
| Q9NRG1-2 | 2 | |
| Q9NRG1-3 | 3 |
RefSeq proteins (2): NP_001269715, NP_064585* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000836 | PRTase_dom | Domain |
| IPR005904 | Hxn_phspho_trans | Family |
| IPR029057 | PRTase-like | Homologous_superfamily |
| IPR050408 | HGPRT | Family |
Pfam: PF00156
UniProt features (32 total): strand 9, helix 8, binding site 7, splice variant 2, sequence conflict 2, initiator methionine 1, chain 1, turn 1, modified residue 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2JBH | X-RAY DIFFRACTION | 1.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NRG1-F1 | 91.27 | 0.79 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (7): 141–149; 141; 142; 173; 194–195; 201; 201
Post-translational modifications (1): 2
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 90 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_UP, GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_UP, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_DN, GOZGIT_ESR1_TARGETS_DN, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_PURINE_CONTAINING_COMPOUND_SALVAGE, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOBASE_METABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, GOBP_PURINE_NUCLEOBASE_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOSIDE_SALVAGE
GO Biological Process (1): purine ribonucleoside salvage (GO:0006166)
GO Molecular Function (6): nucleotide binding (GO:0000166), magnesium ion binding (GO:0000287), protein homodimerization activity (GO:0042803), hypoxanthine phosphoribosyltransferase activity (GO:0004422), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (1): cytosol (GO:0005829)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| purine-containing compound salvage | 1 |
| nucleoside salvage | 1 |
| purine ribonucleoside biosynthetic process | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| metal ion binding | 1 |
| identical protein binding | 1 |
| protein dimerization activity | 1 |
| purine phosphoribosyltransferase activity | 1 |
| binding | 1 |
| cation binding | 1 |
| cytoplasm | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1615 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PRTFDC1 | APRT | P07741 | 608 |
| PRTFDC1 | ANKRD55 | Q3KP44 | 570 |
| PRTFDC1 | TLL1 | O43897 | 542 |
| PRTFDC1 | RNASE1 | P07998 | 542 |
| PRTFDC1 | ZNF626 | Q68DY1 | 487 |
| PRTFDC1 | GART | P22102 | 445 |
| PRTFDC1 | COBL | O75128 | 436 |
| PRTFDC1 | PPP1R14C | Q8TAE6 | 433 |
| PRTFDC1 | TIPE1 | Q8WVP5 | 428 |
| PRTFDC1 | EN2 | P19622 | 425 |
| PRTFDC1 | UMPS | P11172 | 423 |
| PRTFDC1 | GMPS | P49915 | 419 |
| PRTFDC1 | TK2 | O00142 | 410 |
| PRTFDC1 | ZNF709 | Q8N972 | 388 |
| PRTFDC1 | ADSS2 | P30520 | 387 |
IntAct
93 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HPRT1 | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.920 |
| PRTFDC1 | HPRT1 | psi-mi:“MI:0915”(physical association) | 0.920 |
| EEF2KMT | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.830 |
| PRTFDC1 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.830 |
| PRTFDC1 | TCL1A | psi-mi:“MI:0915”(physical association) | 0.720 |
| PRTFDC1 | EPM2AIP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| TCL1A | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| EPM2AIP1 | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| MCMBP | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PRTFDC1 | GNPDA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRTFDC1 | LGALS9B | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (65): PRTFDC1 (Two-hybrid), PRTFDC1 (Two-hybrid), PRTFDC1 (Two-hybrid), PRTFDC1 (Two-hybrid), MCMBP (Two-hybrid), EEF2KMT (Two-hybrid), LGALS9B (Two-hybrid), PRTFDC1 (Affinity Capture-MS), PRTFDC1 (Affinity Capture-MS), PRTFDC1 (Affinity Capture-MS), PRTFDC1 (Affinity Capture-MS), PRTFDC1 (Affinity Capture-MS), PRTFDC1 (Affinity Capture-MS), PRTFDC1 (Two-hybrid), NIF3L1 (Two-hybrid)
ESM2 similar proteins: A4II60, A5A6I1, B4S3A5, G5EDZ2, O42895, O65583, O74427, O94710, P00492, P00493, P00494, P07833, P09383, P20035, P27515, P27605, P41888, P43152, P47959, P56523, Q07010, Q10439, Q1RMS2, Q25566, Q26997, Q26998, Q27541, Q2M197, Q3SZ18, Q45FY6, Q55EL3, Q5F3Z1, Q64531, Q6DCP3, Q6GQ37, Q6LDD9, Q6LZE9, Q6WIT9, Q8VYB2, Q9FKS0
Diamond homologs: A4II60, A5A6I1, C0ZG45, O66821, O69537, P00492, P00493, P00494, P07833, P09383, P0A5T1, P0A9M2, P0A9M3, P0A9M4, P18134, P20035, P27605, P37171, P37472, P43152, P45078, P47959, P51900, P71479, P96794, P9WHQ8, P9WHQ9, Q02522, Q26997, Q3SZ18, Q45FY6, Q5HRP4, Q64531, Q6DCP3, Q6LDD9, Q6WIT9, Q724J4, Q839B2, Q8CQV4, Q8DRP8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
53 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 38 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2097 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:24855316:A:AC | donor_gain | 1.0000 |
| 10:24855317:C:CC | donor_gain | 1.0000 |
| 10:24855317:CAGT:C | donor_gain | 1.0000 |
| 10:24856995:CCTT:C | acceptor_gain | 1.0000 |
| 10:24872062:TT:T | acceptor_gain | 1.0000 |
| 10:24872064:C:CC | acceptor_gain | 1.0000 |
| 10:24937179:CTT:C | donor_loss | 1.0000 |
| 10:24937180:TTA:T | donor_loss | 1.0000 |
| 10:24937181:TAC:T | donor_loss | 1.0000 |
| 10:24937182:A:AC | donor_gain | 1.0000 |
| 10:24937182:A:T | donor_loss | 1.0000 |
| 10:24937182:AC:A | donor_gain | 1.0000 |
| 10:24937182:ACC:A | donor_gain | 1.0000 |
| 10:24937183:C:CC | donor_gain | 1.0000 |
| 10:24937183:CC:C | donor_gain | 1.0000 |
| 10:24937183:CCC:C | donor_gain | 1.0000 |
| 10:24937183:CCCT:C | donor_gain | 1.0000 |
| 10:24937363:CAATT:C | acceptor_gain | 1.0000 |
| 10:24937364:AATT:A | acceptor_gain | 1.0000 |
| 10:24937365:ATT:A | acceptor_gain | 1.0000 |
| 10:24937365:ATTC:A | acceptor_loss | 1.0000 |
| 10:24937366:TT:T | acceptor_gain | 1.0000 |
| 10:24937366:TTC:T | acceptor_loss | 1.0000 |
| 10:24937367:TC:T | acceptor_loss | 1.0000 |
| 10:24937368:C:A | acceptor_loss | 1.0000 |
| 10:24937368:C:CC | acceptor_gain | 1.0000 |
| 10:24937369:T:C | acceptor_loss | 1.0000 |
| 10:24851386:A:AC | donor_gain | 0.9900 |
| 10:24851387:C:CC | donor_gain | 0.9900 |
| 10:24851466:T:C | acceptor_gain | 0.9900 |
AlphaMissense
1494 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:24937205:G:C | F106L | 0.996 |
| 10:24937205:G:T | F106L | 0.996 |
| 10:24937207:A:G | F106L | 0.996 |
| 10:24851428:C:T | G197E | 0.995 |
| 10:24851454:A:C | F188L | 0.994 |
| 10:24851454:A:T | F188L | 0.994 |
| 10:24851456:A:G | F188L | 0.994 |
| 10:24851429:C:G | G197R | 0.993 |
| 10:24851429:C:T | G197R | 0.993 |
| 10:24851436:A:C | F194L | 0.992 |
| 10:24851436:A:T | F194L | 0.992 |
| 10:24851438:A:G | F194L | 0.992 |
| 10:24937269:A:G | L85P | 0.992 |
| 10:24851455:A:G | F188S | 0.991 |
| 10:24858396:A:T | V140D | 0.991 |
| 10:24849887:A:T | I212K | 0.990 |
| 10:24851397:T:A | R207S | 0.990 |
| 10:24851397:T:G | R207S | 0.990 |
| 10:24851398:C:A | R207I | 0.990 |
| 10:24851398:C:G | R207T | 0.990 |
| 10:24851428:C:A | G197V | 0.990 |
| 10:24855364:A:C | S169R | 0.990 |
| 10:24855364:A:T | S169R | 0.990 |
| 10:24856914:T:G | S169R | 0.990 |
| 10:24858405:A:T | V137D | 0.990 |
| 10:24937280:G:C | F81L | 0.990 |
| 10:24937280:G:T | F81L | 0.990 |
| 10:24937282:A:G | F81L | 0.990 |
| 10:24937367:T:A | R52S | 0.990 |
| 10:24937367:T:G | R52S | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000007917 (10:24860416 C>T), RS1000087551 (10:24905072 C>T), RS1000092291 (10:24947201 C>A), RS1000114115 (10:24860971 T>C), RS1000117714 (10:24930744 C>T), RS1000159606 (10:24924896 G>A), RS1000177208 (10:24864293 G>T), RS1000236050 (10:24919180 A>C), RS1000280763 (10:24878054 G>A,T), RS1000368065 (10:24872725 A>T), RS1000372842 (10:24889993 G>C), RS1000419708 (10:24912605 T>C), RS1000426543 (10:24947640 T>C), RS1000433011 (10:24954587 C>A,G), RS1000434166 (10:24851865 C>G,T)
Disease associations
OMIM: gene MIM:610751 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
39 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_334 | Obesity-related traits | 3.000000e-06 |
| GCST002118_1 | Metabolite levels (Pyroglutamine) | 4.000000e-06 |
| GCST002681_1 | Post-traumatic stress disorder | 2.000000e-09 |
| GCST002875_1 | Diisocyanate-induced asthma | 5.000000e-06 |
| GCST004603_50 | Platelet count | 4.000000e-10 |
| GCST004607_114 | Plateletcrit | 7.000000e-13 |
| GCST004610_108 | White blood cell count | 1.000000e-44 |
| GCST004611_50 | High light scatter reticulocyte count | 1.000000e-205 |
| GCST004612_106 | High light scatter reticulocyte percentage of red cells | 6.000000e-202 |
| GCST004613_14 | Sum neutrophil eosinophil counts | 3.000000e-32 |
| GCST004614_35 | Granulocyte count | 2.000000e-32 |
| GCST004619_203 | Reticulocyte fraction of red cells | 8.000000e-163 |
| GCST004620_113 | Sum basophil neutrophil counts | 3.000000e-32 |
| GCST004621_12 | Red cell distribution width | 6.000000e-16 |
| GCST004622_29 | Reticulocyte count | 2.000000e-163 |
| GCST004625_176 | Monocyte count | 8.000000e-48 |
| GCST004626_76 | Myeloid white cell count | 3.000000e-39 |
| GCST004627_7 | Lymphocyte count | 9.000000e-17 |
| GCST004628_108 | Immature fraction of reticulocytes | 4.000000e-139 |
| GCST004629_87 | Neutrophil count | 2.000000e-32 |
| GCST005580_102 | Intraocular pressure | 4.000000e-08 |
| GCST005580_185 | Intraocular pressure | 2.000000e-08 |
| GCST008764_3 | Perceived intensity of neohesperidin dihydrochalcone | 8.000000e-06 |
| GCST90000025_394 | Appendicular lean mass | 3.000000e-40 |
| GCST90002381_320 | Eosinophil count | 1.000000e-14 |
| GCST90002385_473 | High light scatter reticulocyte count | 0.000000e+00 |
| GCST90002386_394 | High light scatter reticulocyte percentage of red cells | 0.000000e+00 |
| GCST90002387_350 | Immature fraction of reticulocytes | 1.000000e-308 |
| GCST90002388_550 | Lymphocyte count | 1.000000e-47 |
| GCST90002393_326 | Monocyte count | 1.000000e-95 |
EFO canonical traits (17, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005106 | body composition measurement |
| EFO:0005408 | pyroglutamine measurement |
| EFO:0006995 | response to diisocyanate |
| EFO:0004309 | platelet count |
| EFO:0007985 | platelet crit |
| EFO:0007986 | reticulocyte count |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0009188 | Red cell distribution width |
| EFO:0005091 | monocyte count |
| EFO:0004587 | lymphocyte count |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0007984 | platelet component distribution width |
| EFO:0007789 | BMI-adjusted waist circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 4 |
| bisphenol A | affects cotreatment, increases methylation, decreases expression | 3 |
| arsenite | affects binding, increases reaction, increases methylation | 2 |
| sodium arsenite | affects acetylation, affects methylation, increases expression | 2 |
| (+)-JQ1 compound | decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression, increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| glycidyl methacrylate | decreases expression | 1 |
| methylparaben | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| monomethylarsonous acid | affects methylation, affects acetylation | 1 |
| abrine | decreases expression | 1 |
| bisphenol S | increases methylation | 1 |
| jinfukang | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Decitabine | affects methylation | 1 |
| Sunitinib | decreases expression | 1 |
| Zoledronic Acid | decreases expression | 1 |
| Fulvestrant | increases methylation, affects cotreatment | 1 |
| Arsenic | affects methylation | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Flame Retardants | decreases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): post-traumatic stress disorder