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PSMB4

gene
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Also known as HN3PROS26

Summary

PSMB4 (proteasome 20S subunit beta 4, HGNC:9541) is a protein-coding gene on chromosome 1q21.3, encoding Proteasome subunit beta type-4 (P28070). Non-catalytic component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. It is a common-essential gene (DepMap: required in 100.0% of cancer cell lines).

The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a member of the proteasome B-type family, also known as the T1B family, that is a 20S core beta subunit.

Source: NCBI Gene 5692 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): proteasome-associated autoinflammatory syndrome 3 (Limited, GenCC)
  • GWAS associations: 2
  • Clinical variants (ClinVar): 300 total — 2 pathogenic
  • GTEx eGene: eQTL in 9 tissues, sQTL in 1 (q < 0.05)
  • Phenotypes (HPO): 26
  • ChEMBL bioactivity: 5 clinical-phase molecules tested; no curated mechanism-of-action drug
  • Cancer dependency (DepMap): dependent in 100.0% of screened cell lines (common-essential)
  • Constraint (gnomAD): pLI 0.13 (intermediate), LOEUF 0.66 (unconstrained)
  • MANE Select transcript: NM_002796
  • Interaction hub: 2,564 STRING partners (top 4% of genes corpus-wide)
  • Notable: 300 clinical variants but no curated precision-oncology (CIViC) evidence yet

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9541
Approved symbolPSMB4
Nameproteasome 20S subunit beta 4
Location1q21.3
Locus typegene with protein product
StatusApproved
AliasesHN3, PROS26
Ensembl geneENSG00000159377
Ensembl biotypeprotein_coding
OMIM602177
Entrez5692

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 6 protein_coding, 6 retained_intron, 6 nonsense_mediated_decay

MANE Select: ENST00000290541

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1, TSL 2: 4, TSL 5: 2

ENST00000290541, ENST00000466425, ENST00000474100, ENST00000476467, ENST00000493673, ENST00000495288, ENST00000495805, ENST00000933662, ENST00000933663, ENST00000933664, ENST00001007911, ENST00001007912, ENST00001025308, ENST00001084506, ENST00001084509, ENST00001084511, ENST00001084512, ENST00001143707

RefSeq mRNA: 1 — MANE Select: NM_002796 NM_002796

CCDS: CCDS996

Canonical transcript exons

ENST00000290541 — 7 exons

ExonStartEnd
ENSE00001045218151401239151401355
ENSE00001850075151401817151401937
ENSE00001942667151399573151399727
ENSE00003517020151399981151400187
ENSE00003522405151401542151401630
ENSE00003527118151400764151400845
ENSE00003560860151400442151400588

Expression profiles

Bgee: expression breadth ubiquitous, 300 present calls, max score 99.51.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 142.2616 / max 1567.9015, expressed in 1824 samples.

Highest expression (Bgee): epithelium of nasopharynx, endometrium epithelium, nasopharynx, adrenal gland, adenohypophysis.

Genetic regulation across tissues (GTEx eQTL / sQTL)

PSMB4 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 9 tissues and its splicing (sQTL) in 1 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

10 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Cells Cultured fibroblastseqtl9.3e-09+0.101:151469775:T:G
Adipose Subcutaneouseqtl8.4e-06-0.121:151410845:C:T
Esophagus Mucosaeqtl3.5e-05+0.111:151469775:T:G
Nerve Tibialeqtl1.9e-04+0.081:151485717:C:T
Adipose Visceral Omentumeqtl9.8e-03+0.081:151413383:C:T
Spleensqtl2.2e-02-0.661:151866247:G:A
Skin Sun Exposed Lower legeqtl2.3e-02-0.091:151457142:T:C
Spleeneqtl2.7e-02-0.111:151371674:C:A
Brain Nucleus accumbens basal gangliaeqtl4.6e-02+0.381:151108467:C:G
Whole Bloodeqtl4.8e-02+0.051:151423306:T:C

FANTOM5 promoters

1 alternative TSS:

Promoter IDTPM avgSamples expressed
5226142.26161824

Top tissues by expression

showing 100 of 301 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
epithelium of nasopharynxUBERON:000195199.51gold quality
endometrium epitheliumUBERON:000481199.51gold quality
nasopharynxUBERON:000172899.49gold quality
right adrenal glandUBERON:000123399.21gold quality
adenohypophysisUBERON:000219699.21gold quality
palpebral conjunctivaUBERON:000181299.20gold quality
mucosa of stomachUBERON:000119999.19gold quality
body of uterusUBERON:000985399.19gold quality
right adrenal gland cortexUBERON:003582799.18gold quality
smooth muscle tissueUBERON:000113599.17gold quality
left adrenal glandUBERON:000123499.17gold quality
left adrenal gland cortexUBERON:003582599.17gold quality
eyeUBERON:000097099.15gold quality
pituitary glandUBERON:000000799.11gold quality
muscle layer of sigmoid colonUBERON:003580599.11gold quality
lower esophagus muscularis layerUBERON:003583399.11gold quality
endocervixUBERON:000045899.10gold quality
left uterine tubeUBERON:000130399.10gold quality
skin of legUBERON:000151199.10gold quality
lower esophagusUBERON:001347399.10gold quality
esophagogastric junction muscularis propriaUBERON:003584199.10gold quality
granulocyteCL:000009499.07gold quality
islet of LangerhansUBERON:000000699.07gold quality
adrenal cortexUBERON:000123599.07gold quality
right ovaryUBERON:000211899.07gold quality
metanephros cortexUBERON:001053399.06gold quality
skin of abdomenUBERON:000141699.05gold quality
gingival epitheliumUBERON:000194999.05gold quality
adult organismUBERON:000702399.04gold quality
zone of skinUBERON:000001499.03gold quality
left coronary arteryUBERON:000162699.03gold quality
descending thoracic aortaUBERON:000234599.03gold quality
pigmented layer of retinaUBERON:000178299.02gold quality
germinal epithelium of ovaryUBERON:000130499.01gold quality
thoracic aortaUBERON:000151599.01gold quality
tibial arteryUBERON:000761099.01gold quality
aortaUBERON:000094799.00gold quality
retinaUBERON:000096699.00gold quality
sigmoid colonUBERON:000115999.00gold quality
ascending aortaUBERON:000149699.00gold quality
popliteal arteryUBERON:000225099.00gold quality
left ovaryUBERON:000211998.99gold quality
cerebellar hemisphereUBERON:000224598.99gold quality
prostate glandUBERON:000236798.99gold quality
right hemisphere of cerebellumUBERON:001489098.99gold quality
endothelial cellCL:000011598.98gold quality
right lungUBERON:000216798.98gold quality
adrenal glandUBERON:000236998.98gold quality
type B pancreatic cellCL:000016998.97gold quality
right lobe of thyroid glandUBERON:000111998.97gold quality
right coronary arteryUBERON:000162598.97gold quality
cerebellar cortexUBERON:000212998.97gold quality
olfactory segment of nasal mucosaUBERON:000538698.97gold quality
left lobe of thyroid glandUBERON:000112098.96gold quality
ovaryUBERON:000099298.95gold quality
coronary arteryUBERON:000162198.94gold quality
spleenUBERON:000210698.94gold quality
parietal pleuraUBERON:000240098.94gold quality
small intestine Peyer’s patchUBERON:000345498.94gold quality
metanephrosUBERON:000008198.93gold quality
gall bladderUBERON:000211098.93gold quality
ectocervixUBERON:001224998.93gold quality
lateral nuclear group of thalamusUBERON:000273698.92gold quality
tendon of biceps brachiiUBERON:000818898.92gold quality
body of stomachUBERON:000116198.91gold quality
mucosa of transverse colonUBERON:000499198.91gold quality
seminal vesicleUBERON:000099898.90gold quality
right uterine tubeUBERON:000130298.90gold quality
cortical plateUBERON:000534398.90gold quality
upper lobe of left lungUBERON:000895298.88gold quality
thyroid glandUBERON:000204698.87gold quality
adrenal tissueUBERON:001830398.87gold quality
rectumUBERON:000105298.86gold quality
C1 segment of cervical spinal cordUBERON:000646998.86gold quality
vaginaUBERON:000099698.85gold quality
lymph nodeUBERON:000002998.84gold quality
adipose tissueUBERON:000101398.84gold quality
transverse colonUBERON:000115798.84gold quality
subcutaneous adipose tissueUBERON:000219098.84gold quality
right frontal lobeUBERON:000281098.84gold quality
adipose tissue of abdominal regionUBERON:000780898.84gold quality
Brodmann (1909) area 9UBERON:001354098.84gold quality
pleuraUBERON:000097798.83gold quality
peritoneumUBERON:000235898.83gold quality
periodontal ligamentUBERON:000826698.83gold quality
omental fat padUBERON:001041498.83gold quality
prefrontal cortexUBERON:000045198.82gold quality
minor salivary glandUBERON:000183098.82gold quality
nasal cavity mucosaUBERON:000182698.81gold quality
esophagusUBERON:000104398.80gold quality
placentaUBERON:000198798.80gold quality
vermiform appendixUBERON:000115498.79gold quality
connective tissueUBERON:000238498.79gold quality
middle temporal gyrusUBERON:000277198.79gold quality
stromal cell of endometriumCL:000225598.78gold quality
bronchial epithelial cellCL:000232898.77gold quality
apex of heartUBERON:000209898.77gold quality
right atrium auricular regionUBERON:000663198.77gold quality
upper lobe of lungUBERON:000894898.77gold quality
body of pancreasUBERON:000115098.76gold quality

Single-cell (SCXA)

Detected in 5 experiment(s), a significant marker in 4.

ExperimentMarker?Max mean expression
E-GEOD-111727yes1462.91
E-MTAB-7008yes1306.66
E-MTAB-8559yes556.85
E-MTAB-6379no1679.10
E-ANND-3no0.00

HPA expression

RNA tissue specificity: Low tissue specificity

showing 60 of 80 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPMProtein (IHC)
Livertissue247.3medium
Heart muscletissue226.5medium
Tonguetissue221.1
Tonsiltissue220.4low
Thymustissue217.5
Epididymistissue212.8medium
Parathyroid glandtissue205.3not detected
Ovarytissue203.4low
Lymph nodetissue200.1low
Urinary bladdertissue183.7medium
Seminal vesicletissue179.6
Smooth muscletissue179.0not detected
Skeletal muscletissue178.0not detected
Placentatissue175.8medium
Kidneytissue173.9medium
Pituitary glandtissue170.6
Fallopian tubetissue167.7medium
Bone marrowtissue163.1low
Breasttissue160.6low
Salivary glandtissue159.8not detected
Rectumtissue156.2low
Adrenal glandtissue154.2medium
Skin 1tissue153.8low
Vaginatissue152.6not detected
Appendixtissue147.8medium
Colontissue147.7low
Thyroid glandtissue146.1low
Cervixtissue143.3not detected
Frontal cortextissue142.7
Adipose tissuetissue141.8low
Duodenumtissue141.1medium
Esophagustissue139.7low
Prostatetissue139.0medium
Pancreastissue135.5medium
Small intestinetissue133.7medium
Gallbladdertissue130.4not detected
Caudate putamentissue130.3
Spleentissue129.7low
Spinal cordtissue125.5
Endometrium 1tissue124.7medium
Superior colliculitissue122.6
Ponstissue121.6
Lungtissue118.6high
Thalamustissue118.3
Locus coeruleustissue117.8
Medulla oblongatatissue113.7
Midbraintissue112.2
Stomach 1tissue105.3high
Substantia nigratissue105.2
Hippocampal formationtissue100.3
Hypothalamustissue98.9
Choroid plexustissue97.8
Corpus callosumtissue94.3
Nucleus accumbenstissue89.8
Septumtissue89.0
Cerebral cortextissue87.5medium
Retinatissue87.5
Somatosensory cortextissue87.5
Putamentissue85.8
Periaqueductal graytissue84.9

Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — Blood vessel (225.3), Lateral funiculus (white matter) (132.8), Ventral spinal cord (125.5), Anterior funiculus (white matter) (124.2), Lateral hypothalamic area (121.7).

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

Targeting PSMB4 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

13 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-548AT-5P99.9670.832666
HSA-MIR-4699-3P99.7170.153142
HSA-MIR-448099.4266.02735
HSA-MIR-10522-5P99.2668.502087
HSA-MIR-397399.2069.191990
HSA-MIR-520G-3P98.9167.381914
HSA-MIR-520H98.9167.381914
HSA-MIR-4782-5P98.3569.331474
HSA-MIR-570698.3569.331463
HSA-MIR-427798.3467.171323
HSA-MIR-5007-5P97.9564.71614

Functional genomics

gnomAD constraint: pLI 0.128, LOEUF 0.659, missense Z 0.796 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD RMC): no regional variation along ENST00000290541 — one region, missense o/e 0.95. DepMap (CRISPR cell-line fitness): dependent in 100.0% of screened cell lines, common-essential.

Most-dependent cell lines (DepMap gene-effect, lower = stronger; ≤ −0.5 shown): Panc 08.13 (-3.884), HCC1937 (-3.522), Panc 10.05 (-3.454), SW837 (-3.33), OUMS-23 (-3.313), OE33 (-3.295), OCI-LY-19 (-3.258), S-117 (-3.2), HT-144 (-3.195), AsPC-1 (-3.191), RPMI-7951 (-3.177), CAL-120 (-3.149), HUP-T3 (-3.14), NCI-H520 (-3.133), NCI-H1650 (-3.099).

Literature-anchored findings (GeneRIF, showing 10)

  • While 26 proteasome dysfunction is observed in Parkinson’s disease (PD), diverse mutations in the parkin gene are linked to early-onset autosomal-recessive forms of familial PD. (PMID:20810900)
  • proteasome subunit beta type 4 (PSMB4), the beta7 subunit of the 20S core complex, was identified as a direct binding partner of CRBN. (PMID:23026050)
  • Data indicate that recruitment of proteasomes into mutant huntingtin (mHTT) protein initiated inclusion bodies (IBs) was observed when the PSMB4-GFP was co-expressed with mHTT. (PMID:24291262)
  • Taken together, our results demonstrated that PSMB4 regulated MM cell growth in part by activating NF-kappaB-miR-21 signaling, which may represent promising targets for novel specific therapies. (PMID:25656574)
  • Our findings implied that PSMB4 is involved in the progression of EOC (epithelial ovarian cancer) and could serve as potential therapeutical target of EOC. These data suggested that PSMB4 may promote cell proliferation via the NF-kappaB-target gene in EOC (epithelial ovarian cancer) (PMID:26439929)
  • We further identified miR-148b as a negative regulator of proteasome beta-4 subunit. Enforced expression of miR-148b resulted in vitro growth inhibition of melanoma cells, whereas this inhibition was further abolished by enforced expression of proteasome beta-4 subunit (PMID:28656878)
  • PSMB4 knockdown decreased the expression levels of MMP2, MMP9 and cathepsin B and decreased proliferation, migration and invasion abilities in human GBM cells. (PMID:29414809)
  • High PSMB4 expression is associated with breast cancer. (PMID:30066880)
  • FoxM1 transcriptionally activates the PSMB4 expression level in cervical cancer cells. (PMID:31699366)
  • Bassoon inhibits proteasome activity via interaction with PSMB4. (PMID:32651614)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriopsmb4ENSDARG00000054696
mus_musculusPsmb4ENSMUSG00000005779
rattus_norvegicusPsmb4ENSRNOG00000020979
drosophila_melanogasterProsbeta7FBGN0250746
caenorhabditis_eleganspbs-7WBGENE00003953

Paralogs (18): PSMB1 (ENSG00000008018), PSMA4 (ENSG00000041357), PSMA3 (ENSG00000100567), PSMB5 (ENSG00000100804), PSMA6 (ENSG00000100902), PSMA7 (ENSG00000101182), PSMA2 (ENSG00000106588), PSMB2 (ENSG00000126067), PSMA1 (ENSG00000129084), PSMB7 (ENSG00000136930), PSMB6 (ENSG00000142507), PSMA5 (ENSG00000143106), PSMA8 (ENSG00000154611), PSMB8 (ENSG00000204264), PSMB10 (ENSG00000205220), PSMB11 (ENSG00000222028), PSMB9 (ENSG00000240065), PSMB3 (ENSG00000277791)

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Bos taurusQ3T10895.1%Diamond
Sus scrofaQ2938493.5%Diamond
Xenopus laevisP2802474.2%Diamond
Dictyostelium discoideumQ556Q048.8%Diamond
Arabidopsis thalianaQ7DLR948.8%Diamond
Schizosaccharomyces pombe 972h-Q9USQ947.3%Diamond
Saccharomyces cerevisiae S288CP3065746.9%Diamond
Encephalitozoon cuniculi GB-M1Q8SS0137.8%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
POGZprotein-coding23126
CGNprotein-coding57530
MIR554ncRNA693139
TUFT1protein-coding7286
SELENBP1protein-coding8991
ZNF687-AS1ncRNA100507670
PI4KBprotein-coding5298
ZNF687protein-coding57592
RFX5protein-coding5993
RFX5-AS1ncRNA101927886

Protein

Protein identifiers

Proteasome subunit beta type-4 — P28070 (reviewed: P28070)

Alternative names: 26 kDa prosomal protein, Macropain beta chain, Multicatalytic endopeptidase complex beta chain, Proteasome beta chain, Proteasome chain 3, Proteasome subunit beta-7

All UniProt accessions (2): P28070, A0A140VK46

UniProt curated annotations — full annotation on UniProt →

Function. Non-catalytic component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex). SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Subunit / interactions. The 26S proteasome consists of a 20S proteasome core and two 19S regulatory subunits. The 20S proteasome core is a barrel-shaped complex made of 28 subunits that are arranged in four stacked rings. The two outer rings are each formed by seven alpha subunits, and the two inner rings are formed by seven beta subunits. The proteolytic activity is exerted by three beta-subunits PSMB5, PSMB6 and PSMB7. Forms a ternary complex with SMAD1 and OAZ1 before PSMB4 is incorporated into the 20S proteasome. Interacts with PRPF19. (Microbial infection) Interacts with HTLV-1 Tax protein. (Microbial infection) Interacts with HIV-1 Nef and Tat proteins.

Subcellular location. Cytoplasm. Nucleus.

Disease relevance. Proteasome-associated autoinflammatory syndrome 3 (PRAAS3) [MIM:617591] An autoinflammatory disorder characterized by onset in early infancy and recurrent fever, nodular dermatitis, myositis, panniculitis-induced lipodystrophy, lymphadenopathy, and immune dysregulation. Variable accompanying features may include joint contractures, hepatosplenomegaly, anemia, thrombocytopenia, recurrent infections, autoantibodies, and hypergammaglobulinemia. Some patients may have intracranial calcifications. PRAAS3 inheritance is autosomal recessive or digenic. The disease is caused by variants affecting distinct genetic loci, including the gene represented in this entry.

Induction. Up-regulated in fibrolamellar carcinomas.

Similarity. Belongs to the peptidase T1B family.

RefSeq proteins (1): NP_002787* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001353Proteasome_sua/bFamily
IPR016050Proteasome_bsu_CSConserved_site
IPR016295Proteasome_beta4Family
IPR023333Proteasome_suB-typeFamily
IPR029055Ntn_hydrolases_NHomologous_superfamily

Pfam: PF00227

UniProt features (34 total): strand 17, helix 7, sequence variant 4, modified residue 3, propeptide 1, chain 1, sequence conflict 1

Structure

Experimental structures (PDB)

showing 30 of 150 structures by resolution:

PDBTitleMethodResolution (Å)
5LE5Native human 20S proteasome at 1.8 AngstromX-RAY DIFFRACTION1.8
5LEYHuman 20S proteasome complex with Oprozomib at 1.9 AngstromX-RAY DIFFRACTION1.9
5LF4Human 20S proteasome complex with Delanzomib at 2.0 AngstromX-RAY DIFFRACTION1.99
5LF1Human 20S proteasome complex with Dihydroeponemycin at 2.0 AngstromX-RAY DIFFRACTION2
5LF7Human 20S proteasome complex with Ixazomib at 2.0 AngstromX-RAY DIFFRACTION2
8UD9Structure of human constitutive 20S proteasome complexed with the inhibitor TDI-8304ELECTRON MICROSCOPY2.04
5LF6Human 20S proteasome complex with Z-LLY-ketoaldehyde at 2.1 AngstromX-RAY DIFFRACTION2.07
5LF3Human 20S proteasome complex with Bortezomib at 2.1 AngstromX-RAY DIFFRACTION2.1
8BZLHuman 20S Proteasome in complex with peptide activator peptide BLM42X-RAY DIFFRACTION2.14
5LEZHuman 20S proteasome complex with Oprozomib in Mg-Acetate at 2.2 AngstromX-RAY DIFFRACTION2.19
5LEXNative human 20S proteasome in Mg-Acetate at 2.2 AngstromX-RAY DIFFRACTION2.2
7AWEHUMAN IMMUNOPROTEASOME 20S PARTICLE IN COMPLEX WITH …X-RAY DIFFRACTION2.29
5LF0Human 20S proteasome complex with Epoxomicin at 2.4 AngstromX-RAY DIFFRACTION2.41
7B12HUMAN IMMUNOPROTEASOME 20S PARTICLE IN COMPLEX WITH …X-RAY DIFFRACTION2.43
9K53Structure of substrate-engaged human 26S proteasome RP-CP subcomplex in state ED2.1ELECTRON MICROSCOPY2.5
9HMNCryoEM structure of human 20S proteasome in complex with proteasome inhibitor …ELECTRON MICROSCOPY2.55
4R3OHuman Constitutive 20S ProteasomeX-RAY DIFFRACTION2.6
6RGQHuman 20S ProteasomeELECTRON MICROSCOPY2.6
9YUZStructure of the human 20S proteasome in complex with a beta5-selective covalent …ELECTRON MICROSCOPY2.6
8CVRHuman 20S proteasome with MG-132ELECTRON MICROSCOPY2.7
6KWYhuman PA200-20S complexELECTRON MICROSCOPY2.72
9MBPSubstrate-engaged human 26S proteasome bound to midnolin with RPT1 at top of spiral …ELECTRON MICROSCOPY2.75
6E5BHuman Immunoproteasome 20S particle in complex with compound 1X-RAY DIFFRACTION2.77
7NANHuman 20S proteasome core particleELECTRON MICROSCOPY2.8
8TM6Human premature 20S proteasome assembly intermediateELECTRON MICROSCOPY2.8
9NKGStructure of substrate engaged MIDN-bound human 26S proteasome, EB-MIDN (Composite map)ELECTRON MICROSCOPY2.8
8QYOHuman proteasome 20S core particleELECTRON MICROSCOPY2.84
8QYNHuman 20S proteasome assembly intermediate structure 5ELECTRON MICROSCOPY2.88
4R67Human constitutive 20S proteasome in complex with carfilzomibX-RAY DIFFRACTION2.89
7NAOHuman PA28-20S proteasome complexELECTRON MICROSCOPY2.9

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P28070-F187.700.81

Human Protein Atlas

Protein class: Enzymes, Peptidases, Threonine-type peptidases, Predicted intracellular proteins, Plasma proteins, Disease related genes, Potential drug targets, Human disease related genes, Essential proteins

Protein evidence: Evidence at protein level

Subcellular location (HPA, imaging): nucleoplasm; mitochondria

Antibody reliability (HPA): IH approved · IF supported

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (3)

TypePositions
N-acetylmethionine1
Phosphoserine26
Phosphotyrosine102

Function

Pathways and Gene Ontology

Reactome pathways

57 curated (TAS) of 172; 13 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

showing 60 of 172 pathways:

IDPathwayEvidence
R-HSA-5678895Defective CFTR causes cystic fibrosis ⚕curated
R-HSA-5362768Hh mutants are degraded by ERAD ⚕curated
R-HSA-180585Vif-mediated degradation of APOBEC3G ⚕curated
R-HSA-180534Vpu mediated degradation of CD4 ⚕curated
R-HSA-382556ABC-family protein mediated transportcurated
R-HSA-9931269AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)curated
R-HSA-174154APC/C:Cdc20 mediated degradation of Securincurated
R-HSA-174178APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1curated
R-HSA-450408AUF1 (hnRNP D0) binds and destabilizes mRNAcurated
R-HSA-1169091Activation of NF-kappaB in B cellscurated
R-HSA-9912633Antigen processing: Ub, ATP-independent proteasomal degradationcurated
R-HSA-983168Antigen processing: Ubiquitination & Proteasome degradationcurated
R-HSA-68867Assembly of the pre-replicative complexcurated
R-HSA-4608870Asymmetric localization of PCP proteinscurated
R-HSA-174084Autodegradation of Cdh1 by Cdh1:APC/Ccurated
R-HSA-349425Autodegradation of the E3 ubiquitin ligase COP1curated
R-HSA-69017CDK-mediated phosphorylation and removal of Cdc6curated
R-HSA-5607764CLEC7A (Dectin-1) signalingcurated
R-HSA-174184Cdc20:Phospho-APC/C mediated degradation of Cyclin Acurated
R-HSA-5607761Dectin-1 mediated noncanonical NF-kB signalingcurated
R-HSA-4641257Degradation of AXINcurated
R-HSA-9766229Degradation of CDH1curated
R-HSA-4641258Degradation of DVLcurated
R-HSA-5610780Degradation of GLI1 by the proteasomecurated
R-HSA-195253Degradation of beta-catenin by the destruction complexcurated
R-HSA-202424Downstream TCR signalingcurated
R-HSA-8854050FBXL7 down-regulates AURKA during mitotic entry and in early mitosiscurated
R-HSA-2871837FCERI mediated NF-kB activationcurated
R-HSA-69481G2/M Checkpointscurated
R-HSA-5610785GLI3 is processed to GLI3R by the proteasomecurated
R-HSA-9762114GSK3B and BTRC:CUL1-mediated-degradation of NFE2L2curated
R-HSA-9929356GSK3B-mediated proteasomal degradation of PD-L1(CD274)curated
R-HSA-5632684Hedgehog ‘on’ statecurated
R-HSA-5358346Hedgehog ligand biogenesiscurated
R-HSA-9020702Interleukin-1 signalingcurated
R-HSA-9755511KEAP1-NFE2L2 pathwaycurated
R-HSA-5687128MAPK6/MAPK4 signalingcurated
R-HSA-5676590NIK–>noncanonical NF-kB signalingcurated
R-HSA-8951664Neddylationcurated
R-HSA-9974237Negative Regulation of DNA Double Strand Break Responsecurated
R-HSA-68949Orc1 removal from chromatincurated
R-HSA-1234176Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alphacurated
R-HSA-8939236RUNX1 regulates transcription of genes involved in differentiation of HSCscurated
R-HSA-8948751Regulation of PTEN stability and activitycurated
R-HSA-5658442Regulation of RAS by GAPscurated
R-HSA-8941858Regulation of RUNX3 expression and activitycurated
R-HSA-350562Regulation of ornithine decarboxylase (ODC)curated
R-HSA-187577SCF(Skp2)-mediated degradation of p27/p21curated
R-HSA-174113SCF-beta-TrCP mediated degradation of Emi1curated
R-HSA-9929491SPOP-mediated proteasomal degradation of PD-L1(CD274)curated
R-HSA-2467813Separation of Sister Chromatidscurated
R-HSA-5668541TNFR2 non-canonical NF-kB pathwaycurated
R-HSA-8852276The role of GTSE1 in G2/M progression after G2 checkpointcurated
R-HSA-5689603UCH proteinasescurated
R-HSA-5689880Ub-specific processing proteasescurated
R-HSA-69601Ubiquitin-Mediated Degradation of Phosphorylated Cdc25Acurated
R-HSA-75815Ubiquitin-dependent degradation of Cyclin Dcurated
R-HSA-5619084ABC transporter disorders ⚕—
R-HSA-1643685Disease ⚕—
R-HSA-5663202Diseases of signal transduction by growth factor receptors and second messengers ⚕—

MSigDB gene sets: 542 (showing top): GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_DN, MORF_MTA1, GOBP_REGULATION_OF_CELL_ACTIVATION, REACTOME_DNA_REPLICATION, REACTOME_SIGNALING_BY_NOTCH, REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1, GOBP_NEGATIVE_REGULATION_OF_CELL_DEVELOPMENT, JI_RESPONSE_TO_FSH_UP, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_REGULATION_OF_INFLAMMATORY_RESPONSE_TO_ANTIGENIC_STIMULUS, MORF_MBD4, MORF_RAB5A, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE

GO Biological Process (25): immune system process (GO:0002376), negative regulation of inflammatory response to antigenic stimulus (GO:0002862), DNA repair (GO:0006281), apoptotic process (GO:0006915), DNA damage response (GO:0006974), response to oxidative stress (GO:0006979), spermatogenesis (GO:0007283), proteasomal protein catabolic process (GO:0010498), proteasomal ubiquitin-independent protein catabolic process (GO:0010499), flagellated sperm motility (GO:0030317), positive regulation of type II interferon production (GO:0032729), positive regulation of interleukin-2 production (GO:0032743), positive regulation of tumor necrosis factor production (GO:0032760), response to type II interferon (GO:0034341), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), CD8-positive, alpha-beta T cell differentiation (GO:0043374), thymic T cell selection (GO:0045061), T-helper 1 cell differentiation (GO:0045063), negative regulation of regulatory T cell differentiation (GO:0045590), meiotic cell cycle (GO:0051321), regulation of proteasomal protein catabolic process (GO:0061136), cellular response to type I interferon (GO:0071357), T-helper 17 cell differentiation (GO:0072539), CD8-positive, alpha-beta T cell homeostasis (GO:0160165), regulation of G1/S transition of mitotic cell cycle (GO:2000045)

GO Molecular Function (2): lipopolysaccharide binding (GO:0001530), protein binding (GO:0005515)

GO Cellular Component (11): proteasome complex (GO:0000502), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), proteasome core complex (GO:0005839), synaptic vesicle (GO:0008021), proteasome core complex, beta-subunit complex (GO:0019774), proteasome storage granule (GO:0034515), ciliary basal body (GO:0036064), extracellular exosome (GO:0070062)

Reactome top-level categories

18 top-level categories:

CategoryPathways
Antigen processing-Cross presentation2
APC/C-mediated degradation of cell cycle proteins2
Host Interactions of HIV factors2
Downstream signaling events of B Cell Receptor (BCR)1
Cellular response to hypoxia1
Regulation of APC/C activators between G1/S and early anaphase1
APC/C:Cdc20 mediated degradation of mitotic proteins1
APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint1
Cyclin E associated events during G1/S transition1
Cyclin A:Cdk2-associated events at S phase entry1
Signaling by WNT1
TCR signaling1
Regulation of Apoptosis1
Mitotic Anaphase1
Fc epsilon receptor (FCERI) signaling1
Stabilization of p531
Metabolism of polyamines1
Transport of small molecules1

GO top-level categories

showing 60 of 65 GO namespaces:

CategoryTerms
cellular anatomical structure3
proteasomal protein catabolic process2
positive regulation of cytokine production2
intracellular protein-containing complex2
intracellular anatomical structure2
cytoplasm2
biological_process1
inflammatory response to antigenic stimulus1
regulation of inflammatory response to antigenic stimulus1
negative regulation of inflammatory response1
negative regulation of immune response1
DNA metabolic process1
DNA damage response1
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
cellular response to stress1
response to stress1
developmental process involved in reproduction1
male gamete generation1
protein catabolic process1
cilium-dependent cell motility1
cilium movement involved in cell motility1
sperm motility1
type II interferon production1
regulation of type II interferon production1
interleukin-2 production1
regulation of interleukin-2 production1
tumor necrosis factor production1
regulation of tumor necrosis factor production1
positive regulation of tumor necrosis factor superfamily cytokine production1
response to cytokine1
innate immune response1
ubiquitin-dependent protein catabolic process1
CD8-positive, alpha-beta T cell activation1
alpha-beta T cell differentiation1
T cell differentiation in thymus1
T cell selection1
alpha-beta T cell activation involved in immune response1
T cell differentiation involved in immune response1
T-helper 1 type immune response1
T-helper cell differentiation1
regulatory T cell differentiation1
negative regulation of T cell differentiation1
regulation of regulatory T cell differentiation1
cell cycle1
sexual reproduction1
reproductive process1
meiotic nuclear division1
lipid binding1
carbohydrate derivative binding1
binding1
endopeptidase complex1
intracellular membrane-bounded organelle1
nuclear lumen1
proteasome complex1
catalytic complex1
exocytic vesicle1
presynapse1
proteasome core complex1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 11 of 39 annotations. The rest are phylogenetic / computational / electronic (IEA).

11 experimentally-supported GO terms:

GO termNSEvidence
proteasomal protein catabolic processBPdirect assay
proteasome-mediated ubiquitin-dependent protein catabolic processBPdirect assay
regulation of proteasomal protein catabolic processBPdirect assay
response to oxidative stressBPdirect assay
ciliary basal bodyCCdirect assay
cytoplasmCCdirect assay
extracellular exosomeCChigh-throughput assay
nucleoplasmCCdirect assay
nucleusCCdirect assay
proteasome complexCCdirect assay
proteasome core complexCCdirect assay

Protein interactions and networks

STRING

showing 15 of 2,564 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
PSMB4PSMB2P31145977
PSMB4PSMB3P31147957
PSMB4PSMB5P28074913
PSMB4PSMB9P28065887
PSMB4PSMA3P25788812
PSMB4PSMB1P20618762
PSMB4PSMA1P25786728
PSMB4PSMA6P34062712
PSMB4PSMA5P28066711
PSMB4PSMB6P28072706
PSMB4PSMC2P35998702
PSMB4PSMA4P25789697
PSMB4POMPQ9Y244686
PSMB4PSMB7Q99436682
PSMB4LTAP1Q9BWL3674

IntAct

Human interaction partners of PSMB4 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

showing 30 of 48 partners by confidence:

PartnerInteraction typeMIscoreRecords
PSMB1physical association0.8005
PSMB7physical association0.8002
POMPphysical association0.7501
PSMA7association0.7302
SMAD1physical association0.6704
PSMA3physical association0.6703
PSMB5physical association0.6601
ATXN1physical association0.5606
TLE5physical association0.5605
AIRIMphysical association0.5603
BCL6physical association0.5603
CCDC57physical association0.5603
CNOT2physical association0.5603
DTX2physical association0.5603
FSD2physical association0.5603
GABARAPL1physical association0.5603
GCAphysical association0.5603
HEMK1physical association0.5603
HGSphysical association0.5603
KANK2physical association0.5603
KRTAP19-5physical association0.5603
MYOZ3physical association0.5603
P4HA3physical association0.5603
PFDN5physical association0.5603
PITX2physical association0.5603
PKN1physical association0.5603
PRKNphysical association0.5603
PROP1physical association0.5603
RNF11physical association0.5603
SOHLH1physical association0.5603

BioGRID (519 interactions; top human partners by supporting records): PSMB7 (Affinity Capture-MS; 20 records), PSMA2 (Affinity Capture-MS; 14 records), PSMB1 (Affinity Capture-MS; 12 records), PSMA4 (Affinity Capture-MS; 11 records), PSMA1 (Affinity Capture-MS; 10 records), PSMA3 (Two-hybrid; 10 records), PSMA5 (Affinity Capture-MS; 10 records), PSMB5 (Affinity Capture-MS; 10 records), PSMA6 (Affinity Capture-MS; 9 records), PSMA7 (Affinity Capture-MS; 9 records), PSMB2 (Affinity Capture-MS; 9 records), PSMB3 (Affinity Capture-MS; 9 records), PSMB6 (Affinity Capture-MS; 9 records), PSMD14 (Co-fractionation; 8 records), FBXO7 (Affinity Capture-MS; 6 records)

SIGNOR signaling

1 signaling interactions:

AEffectBMechanism
PSMB4“form complex”“26S Proteasome”binding

Protein complexes (CORUM) (5)

Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).

5 complexes by size:

ComplexSubunitsMembers
★ PA700-20S-PA28 complex36PSMA5, PSMD4, PSMD6, PSMD9, PSME1, PSME2, PSMD11, PSMB1, PSMB4, PSMC1, PSMA3, PSMB5, PSMD10, PSMA7, PSMC5, PSMD14, PSMD7, PSMA6, PSMB6, PSMD12, PSMD3, PSMD1, PSMA4, PSMB7, PSMC3, PSMC4, PSMC6, PSMD8, PSMB3, PSMC2, PSMD13, PSMA1, PSMA2, PSMB2, PSMD2, PSMD5
★ 26S proteasome22PSMA2, PSMA7, PSMB3, PSMA5, PSMA6, PSMB4, PSMB7, PSMC1, PSMC2, PSMC5, PSMC6, PSMA3, PSMB2, PSMB5, PSMC3, PSMC4, PSMD13, PSMD4, PSMA1, PSMA4, PSMB1, PSMB6
★ PA28-20S proteasome16PSMA6, PSMB5, PSMA2, PSMA7, PSMB2, PSMB4, PSME1, PSMA3, PSMB1, PSMB3, PSMB6, PSME2, PSMA1, PSMA5, PSMB7, PSMA4
★ PA28gamma-20S proteasome15PSMB5, PSMA5, PSMB1, PSMB4, PSME3, PSMA1, PSMA4, PSMA7, PSMB2, PSMA2, PSMA3, PSMB6, PSMB7, PSMA6, PSMB3
★ 20S proteasome14PSMA5, PSMA6, PSMB1, PSMB6, PSMA2, PSMA7, PSMB2, PSMB3, PSMB4, PSMB5, PSMB7, PSMA1, PSMA3, PSMA4

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 48 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Antigen processing: Ub, ATP-independent proteasomal degradation592.1×8e-09
Regulation of activated PAK-2p34 by proteasome mediated degradation762.9×5e-10
Regulation of ornithine decarboxylase (ODC)761.4×5e-10
Vpu mediated degradation of CD4760.0×5e-10
Autodegradation of the E3 ubiquitin ligase COP1760.0×5e-10
Ubiquitin-dependent degradation of Cyclin D760.0×5e-10
Cross-presentation of soluble exogenous antigens (endosomes)757.3×5e-10
Vif-mediated degradation of APOBEC3G757.3×5e-10

GO biological processes:

GO termPartnersFoldFDR
proteasome-mediated ubiquitin-dependent protein catabolic process89.5×7e-04

Disease & clinical

Genetic variants

Variant evidence for PSMB4: 300 ClinVar records (2 pathogenic / likely pathogenic); 2 GWAS associations. Per-variant detail is on Sugi Variant.

ClinVar

300 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic2
Likely pathogenic0
Uncertain significance157
Likely benign105
Benign8

Top pathogenic / likely-pathogenic (2)

Showing all 2 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.

Variant IDHGVSClassificationReviewSubmitters
548955NM_002796.3(PSMB4):c.636_644del (p.Asp212_Val214del)Pathogenicno assertion criteria provided1
548958NM_002796.3(PSMB4):c.666C>A (p.Tyr222Ter)Pathogenicno assertion criteria provided1

Per-variant reference — Sugi Variant

Explore PSMB4’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 23 predictions of 339):

Position(s)EffectΔscoreSites
1:151399980acceptor_loss1.0000
1:151400188–151400189donor_loss1.00005
1:151400232donor_gain1.0000
1:151401631–151401632donor_loss1.00004
1:151399728–151399729donor_loss0.99006
1:151399973acceptor_gain0.9900
1:151399979acceptor_loss0.99002
1:151400168donor_gain0.9900
1:151400189donor_loss0.9900
1:151400209donor_gain0.9900

AlphaMissense

778 missense substitutions predicted likely pathogenic (of 1,700 scored), across 188 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
D7080.9950.999
D10480.9950.998
D22580.9940.997
D10180.9860.997
D17180.9450.995
D12480.9220.963
N15380.9010.996
W25470.9950.999
F8170.9920.998
W15270.9780.996
F16670.9740.997
W13670.9720.995
F6170.9710.998
F10570.9660.990
F26370.9330.989
H13470.9200.993
Q10670.9070.987
R13970.8970.953
N9170.8500.992
F23270.8380.982

HPA cancer prognostics

RNA cancer specificity: Low cancer specificity

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

4 prognostic cancer types:

CancerPrognosticp-value
Breast Invasive Carcinoma (validation)favorable6.5e-06
Kidney Renal Clear Cell Carcinoma (validation)unfavorable1.59e-05
Liver Hepatocellular Carcinoma (TCGA)unfavorable0.000422
Kidney Renal Papillary Cell Carcinoma (TCGA)unfavorable0.000514

Disease associations

OMIM: gene MIM:602177 | disease phenotypes: MIM:617591, MIM:256040

GenCC curated gene-disease

1 curated gene-disease records:

DiseaseClassificationInheritanceRecords
proteasome-associated autoinflammatory syndrome 3LimitedAutosomal recessive2

Genomics England panels (PanelApp)

Clinical diagnostic gene panels including this gene (5 panels, 3 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.

5 panels:

PanelRating
Autoinflammatory disordersgreen
Childhood interstitial lung diseasegreen
Severe insulin resistance and lipodystrophy syndromesgreen
COVID-19 researchamber
Primary immunodeficiency or monogenic inflammatory bowel diseaseamber

Mondo (2): proteasome-associated autoinflammatory syndrome 3 (MONDO:0054699), proteasome-associated autoinflammatory syndrome 1 (MONDO:0054698)

Orphanet (4): Nakajo-Nishimura syndrome (Orphanet:2615), Proteasome-associated autoinflammatory syndrome (Orphanet:324977), JMP syndrome (Orphanet:324999), CANDLE syndrome (Orphanet:325004)

HPO phenotypes

26 phenotypes (HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000246Sinusitis
HP:0000509Conjunctivitis
HP:0000956Acanthosis nigricans
HP:0000988Skin rash
HP:0001369Arthritis
HP:0001371Flexion contracture
HP:0001508Failure to thrive
HP:0001744Splenomegaly
HP:0001873Thrombocytopenia
HP:0001888Decreased total lymphocyte count
HP:0001903Anemia
HP:0001954Recurrent fever
HP:0002155Hypertriglyceridemia
HP:0002240Hepatomegaly
HP:0002716Lymphadenopathy
HP:0002719Recurrent infections
HP:0002829Arthralgia
HP:0002910Elevated circulating hepatic transaminase concentration
HP:0003565Elevated erythrocyte sedimentation rate
HP:0009125Lipodystrophy
HP:0010702Increased circulating immunoglobulin concentration
HP:0012490Panniculitis
HP:0025131Finger swelling
HP:0100539Periorbital edema
HP:0100614Myositis

GWAS associations

2 associations:

StudyTraitp-value
GCST002041_2Blood trace element (Cu levels)3e-20
GCST005951_48Body mass index4e-9

EFO canonical traits (from GWAS)

2 canonical traits:

EFO IDTrait name
EFO:0005267serum copper measurement
EFO:0004340body mass index

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL2364701 (PROTEIN COMPLEX), CHEMBL3831201 (PROTEIN COMPLEX GROUP), CHEMBL4879435 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 43,320 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

5 molecules by phase:

MoleculeNamePhasePatents
CHEMBL325041BORTEZOMIB413,415
CHEMBL451887CARFILZOMIB413,156
CHEMBL2141296IXAZOMIB36,376
CHEMBL371405MARIZOMIB37,520
CHEMBL2103884OPROZOMIB22,853

PharmGKB: 1 entry (CPIC guideline: no)

PharmGKB variant annotations

Per-publication pharmacogenomic findings for this gene (significant associations).

1 published findings:

VariantDrug(s)CategoryFindingPMID
rs2296840OtherAllele T is associated with increased risk of Depressive Disorder, Major.PMID:18504423

Binding affinities (BindingDB)

151 measured of 196 human assays (196 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
Cinnabaramide GIC500.6 nM
CHEMBL4102324IC500.92 nM
CINNABARAMIDE AIC501 nM
MARIZOMIBIC501.3 nM
CHEMBL4460323IC501.5 nM
Alpha-ketocarbonyl derivativeIC502 nM
(R)-3-methyl-1-((S)-3-phenyl-2-(pyrazine-6-carboxamido)propanamido)butylboronic acidIC502.4 nM
CHEMBL4517600IC502.4 nM
CHEMBL4587036IC502.5 nM
CHEMBL4444107IC503.4 nM
CHEMBL5197285IC503.4 nM
CHEMBL4541038IC503.6 nM
CHEMBL4877708IC503.8 nM
CHEMBL4547405IC503.9 nM
CHEMBL5171225IC504 nM
CHEMBL4581126IC504.3 nM
CHEMBL4542373IC504.6 nM
CHEMBL4558648IC504.6 nM
CHEMBL4467618IC504.8 nM
CHEMBL5186240IC505.2 nM
Alpha-ketocarbonyl derivativeIC506 nM
Cinnabaramide FIC506 nM
CHEMBL4447701IC506.4 nM
CHEMBL4435814IC506.4 nM
CHEMBL4436430IC506.5 nM
CHEMBL432281IC507 nM
CHEMBL5202627IC507 nM
CHEMBL5208573IC507.2 nM
CHEMBL4559271IC507.7 nM
CHEMBL5172645IC508.1 nM
CHEMBL5179570IC508.4 nM
CHEMBL5209077IC508.6 nM
CHEMBL5173459IC508.9 nM
CHEMBL5188065IC509.3 nM
CHEMBL5196378IC509.3 nM
CHEMBL4572638IC509.4 nM
CHEMBL5201055IC509.4 nM
CHEMBL4441018IC509.5 nM
Cinnabaramide CIC5012 nM
TP-103IC5014 nM
CHEMBL4578081IC5014 nM
MLN2238IC5015 nM
CHEMBL4443333IC5015 nM
CHEMBL4864661IC5016 nM
CHEMBL4875208IC5016 nM
CHEMBL4557130IC5017 nM
CHEMBL27225IC5018 nM
TP-108IC5018 nM
CHEMBL2114122IC5020 nM
TP-109IC5020 nM

ChEMBL bioactivities

313 potent at pChembl≥5 of 339 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.22IC500.6nMCINNABARAMIDE G
9.22Ki0.6nMCHEMBL5624541
9.22Ki0.6nMBORTEZOMIB
9.04IC500.92nMCHEMBL4102324
9.00IC501nMCINNABARAMIDE A
8.89IC501.3nMMARIZOMIB
8.82IC501.5nMCHEMBL4460323
8.70IC502nMCHEMBL307387
8.66IC502.2nMCHEMBL5419917
8.62IC502.4nMCHEMBL4517600
8.62IC502.4nMBORTEZOMIB
8.62IC502.4nMCHEMBL5413513
8.60IC502.5nMCHEMBL4587036
8.59IC502.56nMBORTEZOMIB
8.57IC502.7nMCHEMBL3237863
8.57IC502.7nMCHEMBL5394365
8.52IC503nMBORTEZOMIB
8.47IC503.4nMCHEMBL4444107
8.47IC503.4nMCHEMBL6143686
8.46IC503.43nMCHEMBL5197285
8.44IC503.6nMCHEMBL4541038
8.41IC503.9nMCHEMBL3237862
8.41IC503.9nMCHEMBL4547405
8.40IC504nMCHEMBL5406440
8.39IC504.1nMCHEMBL3237864
8.39IC504.1nMCHEMBL3237867
8.39IC504.03nMCHEMBL5171225
8.37IC504.28nMCHEMBL4581126
8.34IC504.6nMCHEMBL4542373
8.34IC504.6nMCHEMBL4558648
8.32IC504.8nMCHEMBL3237873
8.32IC504.8nMCHEMBL4467618
8.30IC505nMCHEMBL5398681
8.29IC505.1nMCHEMBL3237865
8.29IC505.15nMCHEMBL5186240
8.28IC505.2nMCHEMBL5429323
8.28IC505.2nMCHEMBL5431451
8.25IC505.6nMCHEMBL5423645
8.24IC505.7nMCHEMBL3237866
8.24IC505.7nMCHEMBL3237860
8.23IC505.9nMCHEMBL3237868
8.22IC506nMCINNABARAMIDE F
8.22IC506nMCHEMBL5412037
8.22IC506nMCHEMBL74336
8.20IC506.3nMCHEMBL5440712
8.19IC506.4nMCHEMBL4447701
8.19IC506.4nMCHEMBL4435814
8.19IC506.5nMCHEMBL4436430
8.19IC506.5nMIXAZOMIB
8.16IC506.91nMBORTEZOMIB

PubChem BioAssay actives

313 with measured affinity, of 1003 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
methyl (2R)-2-acetamido-3-[(2R,3S,4R)-2-[(S)-[(1S)-cyclohex-2-en-1-yl]-hydroxymethyl]-4-hexyl-3-hydroxy-3-methyl-5-oxopyrrolidine-2-carbonyl]sulfanylpropanoate277357: Inhibition of human 20S proteasomeic500.0006uM
[(1R)-1-[[(2S)-1-amino-1-oxo-3-phenylpropan-2-yl]-(pyrazine-2-carbonyl)amino]-3-methylbutyl]boronic acid2131634: Binding affinity to 20s proteosome (unknown origin) assessed as inhibition constantki0.0006uM
Bortezomib2205591: Inhibition of 20S proteasome (unknown origin)ki0.0006uM
1-N-[(2S)-1-[[(2S)-1-[(2-chlorophenyl)methylamino]-1-oxo-4-phenylbutan-2-yl]amino]-4-(2,2-dimethylpropylamino)-1,4-dioxobutan-2-yl]-4-N-(1,3-thiazol-2-yl)piperidine-1,4-dicarboxamide1903224: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-Leu Leu-Val-Tyr-AMC as substrate preincubated for 15 mins followed by substrate addition measured by fluorescence assayic500.0009uM
(1R,4R,5S)-1-[(S)-[(1S)-cyclohex-2-en-1-yl]-hydroxymethyl]-4-hexyl-5-methyl-6-oxa-2-azabicyclo[3.2.0]heptane-3,7-dione277357: Inhibition of human 20S proteasomeic500.0010uM
(1R,4R,5S)-4-(2-chloroethyl)-1-[(S)-[(1S)-cyclohex-2-en-1-yl]-hydroxymethyl]-5-methyl-6-oxa-2-azabicyclo[3.2.0]heptane-3,7-dione1853759: Inhibition of 20S proteasome (unknown origin) by fluorescence based assayic500.0013uM
1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]-4-N-(1,3-thiazol-2-yl)piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0015uM
N-[5-[[amino(nitramido)methylidene]amino]-1-[(4-methyl-1-oxopentan-2-yl)amino]-1-oxopentan-2-yl]-2-cyclopentyl-10-(1,3-dioxoisoindol-2-yl)decanamide3028: Compound was evaluated for inhibitory activity against 20S proteasome from human liver and brainic500.0020uM
4-[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]-3-cyclopropylpropanoyl]amino]-3-methylbutyl]-2-methyl-3,5,10-trioxa-4-boratricyclo[5.2.1.02,6]decane-8-carboxylic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0022uM
4-N-(4-benzoylphenyl)-1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0024uM
4-[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]-2-cyclopentylacetyl]amino]-3-methylbutyl]-2-methyl-3,5,10-trioxa-4-boratricyclo[5.2.1.02,6]decane-8-carboxylic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0024uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]acetyl]amino]-5-carbamimidamidopentanoyl]amino]-6-aminohexanoyl]amino]-6-aminohexanoyl]amino]-5-carbamimidamidopentanoyl]amino]-5-carbamimidamidopentanoyl]amino]-N-[(2S)-5-carbamimidamido-1-[[(2S)-5-carbamimidamido-1-[[(2S)-5-carbamimidamido-1-[[2-[[2-[[2-[[(2S)-4-methyl-1-[[(2S)-4-methyl-1-[[(2S)-4-methyl-1-oxopentan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxopentan-2-yl]amino]-2-oxoethyl]amino]-2-oxoethyl]amino]-2-oxoethyl]amino]-1-oxopentan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxopentan-2-yl]pentanediamide1559513: Inhibition of human 20S proteasome using Suc-LLVY-AMC as substrate measured every 5 mins for 120 mins by fluorescence based assayic500.0025uM
4-[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]-2-cyclopropylacetyl]amino]-3-methylbutyl]-2-methyl-3,5,10-trioxa-4-boratricyclo[5.2.1.02,6]decane-8-carboxylic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0027uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0027uM
4-N-(4-fluorophenyl)-1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0034uM
1-N-[(2S)-4-(2,2-dimethylpropylamino)-1,4-dioxo-1-[[(2S)-1-oxo-4-phenyl-1-[[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]amino]butan-2-yl]amino]butan-2-yl]-4-N-methyl-4-N-(1,3-thiazol-2-yl)piperidine-1,4-dicarboxamide1903224: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-Leu Leu-Val-Tyr-AMC as substrate preincubated for 15 mins followed by substrate addition measured by fluorescence assayic500.0034uM
4-methyl-N-[(2R)-1-[[(2R)-4-methyl-1-[(2S)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]-2-[[(2S)-2-[(2-morpholin-4-ylacetyl)amino]-4-phenylbutanoyl]amino]pentanamide2236585: Activation of 26s proteosome (unknown origin)ic500.0034uM
1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]-4-N-pyridin-3-ylpiperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0036uM
4-N-(1,3-benzothiazol-2-yl)-1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0039uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0039uM
[(1R)-1-[[2-[(2,5-dibromobenzoyl)amino]acetyl]amino]-3-methylbutyl]boronic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0040uM
1-N-[(2S)-4-(2,2-dimethylpropylamino)-1,4-dioxo-1-[[(2S)-1-oxo-4-phenyl-1-[[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]amino]butan-2-yl]amino]butan-2-yl]-4-N-pyridin-3-ylpiperidine-1,4-dicarboxamide1903224: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-Leu Leu-Val-Tyr-AMC as substrate preincubated for 15 mins followed by substrate addition measured by fluorescence assayic500.0040uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0041uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0041uM
(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]acetyl]amino]-5-carbamimidamidopentanoyl]amino]-6-aminohexanoyl]amino]-6-aminohexanoyl]amino]-5-carbamimidamidopentanoyl]amino]-5-carbamimidamidopentanoyl]amino]-N-[(2S)-5-carbamimidamido-1-[[(2S)-5-carbamimidamido-1-[[(2S)-5-carbamimidamido-1-[[2-[[2-[[2-[[(2S)-3-(4-hydroxyphenyl)-1-[[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-2-oxoethyl]amino]-2-oxoethyl]amino]-2-oxoethyl]amino]-1-oxopentan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxopentan-2-yl]pentanediamide1559513: Inhibition of human 20S proteasome using Suc-LLVY-AMC as substrate measured every 5 mins for 120 mins by fluorescence based assayic500.0043uM
1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]-4-N-(1,3,4-thiadiazol-2-yl)piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0046uM
4-N-(4-chlorophenyl)-1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0046uM
4-N-(4-methoxyphenyl)-1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0048uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-(4-phenylmethoxybutyl)butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0048uM
[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]-3-cyclopropylpropanoyl]amino]-3-methylbutyl]boronic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0050uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0051uM
(2S)-N’-(2,2-dimethylpropyl)-2-[[4-[methyl(pyridine-3-carbonyl)amino]piperidine-1-carbonyl]amino]-N-[(2S)-1-oxo-4-phenyl-1-[[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]amino]butan-2-yl]butanediamide1903224: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-Leu Leu-Val-Tyr-AMC as substrate preincubated for 15 mins followed by substrate addition measured by fluorescence assayic500.0052uM
4-[(1R)-1-[[2-[(2,5-dichlorobenzoyl)amino]acetyl]amino]-3-methylbutyl]-2-methyl-3,5,10-trioxa-4-boratricyclo[5.2.1.02,6]decane-8-carboxylic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0052uM
[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]acetyl]amino]-3-methylbutyl]boronic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0052uM
[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]-2-cyclopropylacetyl]amino]-3-methylbutyl]boronic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0056uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0057uM
benzyl N-[(2S)-1-[[(2R)-1-[(1R,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]-4-phenylbutan-2-yl]amino]-1-oxopropan-2-yl]carbamate1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0057uM
(2S)-2-[(2,5-dichlorobenzoyl)amino]-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0059uM
(2R)-2-acetamido-3-[(2R,3S,4R)-2-[(S)-[(1S)-cyclohex-2-en-1-yl]-hydroxymethyl]-4-hexyl-3-hydroxy-3-methyl-5-oxopyrrolidine-2-carbonyl]sulfanylpropanoic acid277357: Inhibition of human 20S proteasomeic500.0060uM
[(1R)-1-[[2-[[2,5-bis(trifluoromethyl)benzoyl]amino]-2-cyclopentylacetyl]amino]-3-methylbutyl]boronic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0060uM
N-[5-[[amino(nitramido)methylidene]amino]-1-[(4-methyl-1-oxopentan-2-yl)amino]-1-oxopentan-2-yl]-10-cyano-2-cyclopentyldecanamide3028: Compound was evaluated for inhibitory activity against 20S proteasome from human liver and brainic500.0060uM
4-[(1R)-1-[[2-[(2,5-dichlorobenzoyl)amino]acetyl]amino]-3-methylbutyl]-3,5,10-trioxa-4-boratricyclo[5.2.1.02,6]decane-8-carboxylic acid2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0063uM
1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]-4-N-(1,2-oxazol-3-yl)piperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0064uM
(2S)-2-[[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanoyl]amino]-4-methyl-N-[(2S)-1-[[(2S)-4-methyl-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]pentanamide1559513: Inhibition of human 20S proteasome using Suc-LLVY-AMC as substrate measured every 5 mins for 120 mins by fluorescence based assayic500.0064uM
1-N-[(2S)-4-methyl-1-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1-oxopentan-2-yl]-4-N-pyrazin-2-ylpiperidine-1,4-dicarboxamide1624025: Inhibition of human 20S proteasome preincubated for 15 mins followed by substrate additionic500.0065uM
Ixazomib2033891: Inhibition of human 20S proteasome chymotrypsin-like activity using Suc-Leu-Leu-Val-Tyr-AMC as fluorogenic peptide pre-incubated for 10 mins with compound followed by substrate addition for 60 mins by spectrofluorimetric analysisic500.0065uM
4-N-(4-chlorophenyl)-1-N-[(2S)-4-(2,2-dimethylpropylamino)-1,4-dioxo-1-[[(2S)-1-oxo-4-phenyl-1-[[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]amino]butan-2-yl]amino]butan-2-yl]-4-N-methylpiperidine-1,4-dicarboxamide1903224: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-Leu Leu-Val-Tyr-AMC as substrate preincubated for 15 mins followed by substrate addition measured by fluorescence assayic500.0069uM
(2S)-N-[(2S,3R,4R)-3-hydroxy-5-[[(2S)-1-[(2-hydroxy-4-methoxyphenyl)methylamino]-3-methyl-1-oxobutan-2-yl]amino]-5-oxo-1-phenyl-4-[(3,4,5-trimethoxyphenyl)methylamino]pentan-2-yl]-3,3-dimethyl-2-[(2-naphthalen-1-ylacetyl)amino]butanamide3027: Tested in vitro for inhibition of chymotrypsin like activity of purified human 20S proteasomeic500.0070uM
Carfilzomib1770085: Inhibition of human 20S proteasome chymotrypsin-like activity in human RPMI-8226 cells using Suc-LLVY-AMC as fluorogenic substrate incubated for 3 hrs by fluorescence assayic500.0070uM
(2S)-2-[[(2S)-3-(4-hydroxyphenyl)-2-[(2-naphthalen-1-ylacetyl)amino]propanoyl]amino]-N-[1-(4-hydroxyphenyl)-3-oxopropan-2-yl]-3-methylbutanamide248827: Inhibitory concentration to inhibit chymotrypsin-like activity of 20S proteasome prepared from human leukemia HL-60 cells was determinedic500.0070uM

CTD chemical–gene interactions

52 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
arseniteaffects binding, increases reaction, increases methylation2
sodium arseniteaffects cotreatment, increases abundance, increases expression2
Arsenic Trioxideincreases expression2
Arsenicaffects cotreatment, increases expression, decreases expression, increases abundance2
Tobacco Smoke Pollutionaffects expression, increases expression2
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxidedecreases expression, increases expression2
Particulate Matterdecreases expression, increases abundance, affects expression, increases reaction2
aristolochic acid Iincreases expression1
triphenyl phosphateaffects expression1
bisphenol Aincreases expression1
nobiletindecreases expression, decreases reaction1
sodium arsenatedecreases expression, decreases reaction1
pyrogallol 1,3-dimethyl etheraffects cotreatment, decreases expression1
trichostatin Aaffects cotreatment, decreases expression1
beta-lapachoneincreases expression1
mono-(2-ethylhexyl)phthalateincreases expression1
cobaltous chlorideincreases expression1
manganese chlorideaffects cotreatment, increases abundance, increases expression1
arsenic trichloridedecreases expression, increases abundance1
microcystin RRdecreases expression1
benzyloxycarbonylleucyl-leucyl-leucine aldehydeincreases expression1
chloropicrindecreases expression1
poly(propyleneimine)decreases expression1
oxidized-L-alpha-1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphorylcholineaffects expression, increases reaction1
erucylphospho-N,N,N-trimethylpropylammoniumdecreases expression1
statticdecreases expression1
EGFR tyrosine kinase inhibitor 324674decreases reaction, increases expression1
bisphenol AFincreases expression1
Decitabinedecreases expression, affects cotreatment1
Sunitinibdecreases expression1

ChEMBL screening assays

171 unique, capped per target: 162 binding, 6 admet, 3 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3222879BindingInhibition of human 20S proteasome using Suc-LLVY-AMC as substrate preincubated for 30 mins followed by substrate addition measured after 90 mins by fluorescence assayOxathiazole-2-one derivative of bortezomib: Synthesis, stability and proteasome inhibition activity — *Medchemcomm*
CHEMBL4736581ADMETInhibition of human 20S proteasome stably expressed in HEK293 cells at 5 to 50 uM using succinyl-LLVY-AMC as substrate preincubated for 30 mins followed by substrate addition and measured at 3 mins interval for 30 mins by fluorescence assayA covalent p97/VCP ATPase inhibitor can overcome resistance to CB-5083 and NMS-873 in colorectal cancer cells. — *Eur J Med Chem*
CHEMBL834792FunctionalInhibitory concentration to inhibit trypsin-like activity of 20S proteasome from human leukemia HL-60 cells was determinedStructure-based design of derivatives of tyropeptin A as the potent and selective inhibitors of mammalian 20S proteasome. — *Bioorg Med Chem Lett*

Cellosaurus cell lines

1 cell lines: 1 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_F6JQEDITGENE PSMB4(NC_000001.11:g.151399383G>C) Point Mutation in A-549 Cell LineCancer cell lineMale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

showing 60 of 223 trials:

NCTPhaseStatusTitle
NCT05044819Phase 4ACTIVE_NOT_RECRUITINGAssessment of Potential for Chronic Liver Injury in Participants Treated With Epidiolex (Cannabidiol) Oral Solution
NCT06598449Phase 4RECRUITINGAssessment of Safety of the Use of Fenfluramine in Children With Dravet Syndrome Under 24 Months of Age
NCT06924827Phase 4NOT_YET_RECRUITINGA Study to Investigate the Transition of Children From ‘Artisanal Cannabidiol (CBD) to Epidiolex
NCT07112365Phase 4RECRUITINGThe FINTEPLA as an Anti-SUDEP Therapy in Dravet Syndrome Project
NCT01882400Phase 4COMPLETEDAssessment of Response to Treatment of Osteoporosis With Oral Bisphosphonates in Patients With Muscular Dystrophy
NCT00098475Phase 3ACTIVE_NOT_RECRUITINGLenalidomide and Dexamethasone With or Without Thalidomide in Treating Patients With Multiple Myeloma
NCT00114101Phase 3ACTIVE_NOT_RECRUITINGLenalidomide in Treating Patients With Multiple Myeloma Undergoing Autologous Stem Cell Transplant
NCT00644228Phase 3ACTIVE_NOT_RECRUITINGLenalidomide and Dexamethasone With or Without Bortezomib in Treating Patients With Previously Untreated Multiple Myeloma
NCT00869206Phase 3COMPLETEDZoledronic Acid in Treating Patients With Metastatic Breast Cancer, Metastatic Prostate Cancer, or Multiple Myeloma With Bone Involvement
NCT02091375Phase 3COMPLETEDAntiepileptic Efficacy Study of GWP42003-P in Children and Young Adults With Dravet Syndrome (GWPCARE1)
NCT02174094Phase 3WITHDRAWNClobazam as Adjunctive Therapy in Paediatric Patients Aged ≥1 to ≤16 Years With Dravet Syndrome
NCT02187809Phase 3TERMINATEDSafety and Tolerability of Clobazam as Adjunctive Therapy in Paediatric Patients Aged ≥1 to ≤16 Years With Dravet Syndrome
NCT02224573Phase 3COMPLETEDAn Open Label Extension Study of Cannabidiol (GWP42003-P) in Children and Adults With Dravet or Lennox-Gastaut Syndromes
NCT02224703Phase 3COMPLETEDGWPCARE2 A Study to Investigate the Efficacy and Safety of Cannabidiol (GWP42003-P) in Children and Young Adults With Dravet Syndrome
NCT02318563Phase 3WITHDRAWNCannabidiol Oral Solution as an Adjunctive Therapy for Treatment of Participants With Inadequately Controlled Dravet Syndrome
NCT02682927Phase 3COMPLETEDA Trial of Two Fixed Doses of ZX008 (Fenfluramine HCl) in Children and Young Adults With Dravet Syndrome
NCT02823145Phase 3COMPLETEDAn Open-Label Extension Trial to Assess the Long-Term Safety of ZX008 (Fenfluramine Hydrochloride HCl) Oral Solution in Children and Young Adults With Dravet Syndrome
NCT02926898Phase 3COMPLETEDA 2-Part Study to Investigate the Dose-Ranging Safety and Pharmacokinetics, Followed by the Efficacy and Safety of ZX008 (Fenfluramine Hydrochloride) Oral Solution as an Adjunctive Therapy in Children ≥ 2 Years Old and Young Adults With Dravet Syndrome
NCT03299842Phase 3TERMINATEDA Study to Assess the Usability of the Embrace Seizure Detection Watch in Children and Young Adults With Dravet Syndrome
NCT03936777Phase 3COMPLETEDA Study to Investigate the Long-Term Safety of ZX008 (Fenfluramine Hydrochloride) Oral Solution in Children and Adults With Epileptic Encephalopathy Including Dravet Syndrome and Lennox-Gastaut Syndrome
NCT04462770Phase 3RECRUITINGA Study of EPX-100 (Clemizole Hydrochloride) in Participants With Dravet Syndrome
NCT04611438Phase 3UNKNOWNResearch on Cognitive Effect of Cannabidiol on Dravet Syndrome and Lennox-Gastaut SyndromeGastaut Syndrome
NCT04940624Phase 3COMPLETEDA Study of Soticlestat as an Add-on Therapy in Children and Young Adults With Dravet Syndrome
NCT05163314Phase 3TERMINATEDA Study of Soticlestat as an Add-on Therapy in Children and Adults With Dravet Syndrome or Lennox-Gastaut Syndrome
NCT05560282Phase 3TERMINATEDFenfluramine for Adult Dravet Patients
NCT06118255Phase 3COMPLETEDA Study to Evaluate Safety, Tolerability, and Pharmacokinetics of Fenfluramine (Hydrochloride) in Infants 1 Year to Less Than 2 Years of Age With Dravet Syndrome
NCT06422377Phase 3TERMINATEDA Study Evaluating Soticlestat in Participants With Dravet Syndrome or Lennox-Gastaut Syndrome Who Have Been Exposed to Fenfluramine
NCT06660394Phase 3ACTIVE_NOT_RECRUITINGA Phase 3, Placebo-Controlled Study to Investigate LP352 in Children and Adults With Dravet Syndrome (DS)
NCT06872125Phase 3RECRUITINGA Double-blind Study Evaluating the Efficacy, Safety, and Tolerability of Zorevunersen in Patients With Dravet Syndrome
NCT01254019Phase 3COMPLETEDA Clinical Study to Assess the Efficacy and Safety of GSK2402968 in Subjects With Duchenne Muscular Dystrophy
NCT01480245Phase 3TERMINATEDOpen Label Study of GSK2402968 in Subjects With Duchenne Muscular Dystrophy
NCT01803412Phase 3TERMINATEDA Study of the Safety, Tolerability & Efficacy of Long-term Administration of Drisapersen in US & Canadian Subjects
NCT01826487Phase 3COMPLETEDPhase 3 Study of Ataluren in Participants With Nonsense Mutation Duchenne Muscular Dystrophy (nmDMD)
NCT01890798Phase 3WITHDRAWNDrisapersen Duchenne Muscular Dystrophy (DMD) Treatment Protocol
NCT02090959Phase 3TERMINATEDAn Extension Study of Ataluren (PTC124) in Participants With Nonsense Mutation Dystrophinopathy
NCT02432885Phase 3COMPLETEDMyocardial Fibrosis Progression in Duchenne and Becker Muscular Dystrophy - ACE Inhibitor Therapy Trial
NCT03179631Phase 3COMPLETEDLong-Term Outcomes of Ataluren in Duchenne Muscular Dystrophy
NCT05126758Phase 3ACTIVE_NOT_RECRUITINGA Study of Deramiocel (CAP-1002) in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy
NCT07587242Phase 3RECRUITINGA Phase 3 Study to Evaluate the Safety and Efficacy of AOC 1044 (Also Referred to as Delpacibart Zotadirsen) in Participants With DMD With Gene Mutations Amenable to Exon 44 Skipping
NCT07608432Phase 3RECRUITINGEfficacy, Safety, and Tolerability of Zeleciment Rostudirsen (DYNE-251) Administered Intravenously Every 4 Weeks in Ambulatory Participants With Duchenne Muscular Dystrophy (FORZETTO)
NCT00066638Phase 2COMPLETEDFR901228 in Treating Patients With Relapsed or Refractory Multiple Myeloma
NCT00088855Phase 2COMPLETEDBortezomib and Pegylated Liposomal Doxorubicin Hydrochloride in Treating Patients With Previously Untreated Symptomatic Multiple Myeloma
NCT00445692Phase 2COMPLETEDLenalidomide, Dexamethasone, and Clarithromycin in Treating Patients Who Have Undergone Stem Cell Transplant for Multiple Myeloma
NCT00839956Phase 2COMPLETEDBortezomib and Vorinostat in Treating Patients With Multiple Myeloma Who Have Undergone Autologous Stem Cell Transplant
NCT01028716Phase 2TERMINATEDDonor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies
NCT01251172Phase 2WITHDRAWNRO4929097 After Autologous Stem Cell Transplant in Treating Patients With Multiple Myeloma
NCT01605032Phase 2COMPLETEDBusulfan, Melphalan, and Bortezomib Before First-Line Stem Cell Transplant in Treating Patients With Multiple Myeloma
NCT01607073Phase 2COMPLETEDVerapamil as Therapy for Children and Young Adults With Dravet Syndrome
NCT02091206Phase 2COMPLETEDA Dose-ranging Pharmacokinetics and Safety Study of GWP42003-P in Children With Dravet Syndrome (GWPCARE1)
NCT03635073Phase 2TERMINATEDA Study of Soticlestat in Adults and Children With Rare Epilepsies
NCT03650452Phase 2COMPLETEDA Phase 2, Multicenter, Randomized, Double-blind, Placebo-controlled Study to Evaluate the Efficacy, Safety, and Tolerability of TAK-935 (OV935) as an Adjunctive Therapy in Pediatric Participants With Developmental and/or Epileptic Encephalopathies
NCT04740476Phase 2ACTIVE_NOT_RECRUITINGAn Open-Label Extension Study of STK-001 for Patients With Dravet Syndrome
NCT05626634Phase 2COMPLETEDOpen-label, Long-term Safety Study of LP352 in Subjects With Developmental and Epileptic Encephalopathy
NCT06401538Phase 2RECRUITINGBMB-101 in Absence Epilepsy and DEE
NCT01153932Phase 2COMPLETEDPhase II Doubleblind Exploratory Study of GSK2402968 in Ambulant Subjects With Duchenne Muscular Dystrophy
NCT01462292Phase 2COMPLETEDA Clinical Study to Assess Two Doses of GSK2402968 in Subjects With Duchenne Muscular Dystrophy (DMD)
NCT01910649Phase 2TERMINATEDA Phase I/II, Open Label, Escalating Dose, Pilot Study to Assess Effect, Safety, Tolerability and PK of Multiple SC Doses of Drisapersen in Patients With Duchenne Muscular Dystrophy and to Assess the Potential for IV Dosing as an Alternative Route of Administration
NCT03406780Phase 2COMPLETEDA Study of CAP-1002 in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy
NCT05479981Phase 2COMPLETEDExtension of AOC 1001-CS1 (MARINA) Study in Adult Myotonic Dystrophy Type 1 (DM1) Patients
NCT06290713Phase 2RECRUITINGVasodilator and Exercise Study for DMD (VASO-REx)

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for PSMB4 across ~30M SureChEMBL compounds — explore on Sugi Predict.