PSMC6
gene geneOn this page
Also known as p42RPT5
Summary
PSMC6 (proteasome 26S subunit, ATPase 6, HGNC:9553) is a protein-coding gene on chromosome 14q22.1, encoding 26S proteasome regulatory subunit 10B (P62333). Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. It is a common-essential gene (DepMap: required in 99.9% of cancer cell lines).
The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes one of the ATPase subunits, a member of the triple-A family of ATPases which have a chaperone-like activity. Pseudogenes have been identified on chromosomes 8 and 12.
Source: NCBI Gene 5706 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 24 total
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 99.9% of screened cell lines (common-essential)
- MANE Select transcript:
NM_002806
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9553 |
| Approved symbol | PSMC6 |
| Name | proteasome 26S subunit, ATPase 6 |
| Location | 14q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | p42, RPT5 |
| Ensembl gene | ENSG00000100519 |
| Ensembl biotype | protein_coding |
| OMIM | 602708 |
| Entrez | 5706 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 15 protein_coding, 6 retained_intron, 6 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000445930, ENST00000458604, ENST00000551328, ENST00000553798, ENST00000553899, ENST00000554044, ENST00000554952, ENST00000554956, ENST00000555175, ENST00000555339, ENST00000555887, ENST00000556813, ENST00000557085, ENST00000557240, ENST00000557517, ENST00000557557, ENST00000557632, ENST00000612399, ENST00000886147, ENST00000886148, ENST00000886149, ENST00000886150, ENST00000886151, ENST00000886152, ENST00000929612, ENST00000929614, ENST00000968040, ENST00000968041, ENST00000968042
RefSeq mRNA: 2 — MANE Select: NM_002806
NM_001366414, NM_002806
CCDS: CCDS9710
Canonical transcript exons
ENST00000445930 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000657452 | 52718229 | 52718352 |
| ENSE00000657454 | 52718977 | 52719038 |
| ENSE00000657456 | 52720861 | 52720981 |
| ENSE00000657458 | 52721110 | 52721190 |
| ENSE00001093466 | 52727499 | 52728590 |
| ENSE00003567998 | 52708309 | 52708388 |
| ENSE00003586046 | 52713881 | 52713968 |
| ENSE00003588987 | 52708483 | 52708522 |
| ENSE00003633761 | 52718081 | 52718142 |
| ENSE00003677883 | 52711410 | 52711524 |
| ENSE00003680470 | 52708764 | 52708816 |
| ENSE00003693795 | 52711101 | 52711168 |
| ENSE00003695961 | 52707200 | 52707304 |
| ENSE00003784016 | 52723965 | 52724036 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 98.79.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 65.6621 / max 1240.9486, expressed in 1814 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 139618 | 59.6130 | 1814 |
| 139617 | 5.8891 | 1658 |
| 139621 | 0.1130 | 12 |
| 139620 | 0.0470 | 10 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| esophagus squamous epithelium | UBERON:0006920 | 98.79 | gold quality |
| buccal mucosa cell | CL:0002336 | 98.37 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 98.22 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 98.17 | gold quality |
| amniotic fluid | UBERON:0000173 | 98.15 | gold quality |
| tibia | UBERON:0000979 | 98.14 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.11 | gold quality |
| visceral pleura | UBERON:0002401 | 98.10 | gold quality |
| parietal pleura | UBERON:0002400 | 98.08 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.89 | gold quality |
| pleura | UBERON:0000977 | 97.85 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.85 | gold quality |
| oral cavity | UBERON:0000167 | 97.78 | gold quality |
| squamous epithelium | UBERON:0006914 | 97.71 | gold quality |
| endometrium | UBERON:0001295 | 97.66 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 97.64 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.56 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.53 | gold quality |
| blood vessel layer | UBERON:0004797 | 97.46 | gold quality |
| penis | UBERON:0000989 | 97.42 | gold quality |
| muscle of leg | UBERON:0001383 | 97.42 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 97.42 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.32 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.15 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 97.11 | gold quality |
| seminal vesicle | UBERON:0000998 | 97.09 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.06 | gold quality |
| rectum | UBERON:0001052 | 97.05 | gold quality |
| muscle organ | UBERON:0001630 | 97.02 | gold quality |
| endothelial cell | CL:0000115 | 97.00 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ATF2, CEBPB, FOS, HIF1A, JUN, TFAP2A, TP53
miRNA regulators (miRDB)
35 targeting PSMC6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-146A-5P | 99.96 | 68.93 | 988 |
| HSA-MIR-146B-5P | 99.96 | 69.13 | 977 |
| HSA-MIR-7153-5P | 99.94 | 68.89 | 1006 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-489-3P | 99.80 | 66.46 | 839 |
| HSA-MIR-204-5P | 99.79 | 71.62 | 2439 |
| HSA-MIR-211-5P | 99.79 | 71.65 | 2440 |
| HSA-MIR-323A-3P | 99.79 | 70.30 | 1739 |
| HSA-MIR-2681-5P | 99.75 | 67.64 | 1655 |
| HSA-MIR-3913-3P | 99.74 | 66.53 | 938 |
| HSA-MIR-891B | 99.59 | 69.81 | 1083 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-302B-5P | 99.50 | 69.49 | 1857 |
| HSA-MIR-302D-5P | 99.50 | 69.34 | 1863 |
| HSA-MIR-3915 | 99.45 | 68.49 | 1905 |
| HSA-MIR-4735-5P | 99.43 | 68.49 | 1780 |
| HSA-MIR-183-3P | 99.41 | 69.41 | 1598 |
| HSA-MIR-3182 | 99.40 | 68.15 | 2454 |
| HSA-MIR-16-2-3P | 99.29 | 70.60 | 1954 |
| HSA-MIR-195-3P | 99.29 | 70.61 | 1954 |
| HSA-MIR-3160-5P | 99.28 | 69.07 | 1938 |
| HSA-MIR-8065 | 99.19 | 70.38 | 1289 |
| HSA-MIR-323B-3P | 99.14 | 68.89 | 725 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 99.9% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 7)
- N protein of SARS Coronavirus interacts with the host cell proteasome subunit p42. (PMID:20478047)
- Evidence of a sex-specific association of PSMC6 genetic variants with subtypes of juvenile idiopathic arthritis. (PMID:24875235)
- Advanced oxidation protein products down-regulate the expression of calcium transport channels through p44/42 MAPK signaling mechanisms in the small intestinal epithelium. (PMID:25801217)
- Our results provide evidence on new T1DM-susceptible loci in the PSMA3, PSMA6 and PSMC6 proteasome genes and give a new insight into the T1DM pathogenesis (PMID:26661414)
- PSMC6 was differently expressed in melanosis coli tissues.PSMC6 expression was related to cell apoptosis. (PMID:30559147)
- PSMC6 promotes osteoblast apoptosis through inhibiting PI3K/AKT signaling pathway activation in ovariectomy-induced osteoporosis mouse model. (PMID:32017075)
- The Silence of PSMC6 Inhibits Cell Growth and Metastasis in Lung Adenocarcinoma. (PMID:34239933)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | psmc6 | ENSDARG00000037038 |
| mus_musculus | Psmc6 | ENSMUSG00000021832 |
| rattus_norvegicus | Psmc6 | ENSRNOG00000007203 |
| drosophila_melanogaster | Rpt4 | FBGN0028685 |
| drosophila_melanogaster | Rpt4R | FBGN0036224 |
| caenorhabditis_elegans | WBGENE00004504 |
Paralogs (5): PSMC4 (ENSG00000013275), PSMC5 (ENSG00000087191), PSMC1 (ENSG00000100764), PSMC2 (ENSG00000161057), PSMC3 (ENSG00000165916)
Protein
Protein identifiers
26S proteasome regulatory subunit 10B — P62333 (reviewed: P62333)
Alternative names: 26S proteasome AAA-ATPase subunit RPT4, Proteasome 26S subunit ATPase 6, Proteasome subunit p42
All UniProt accessions (10): P62333, A0A087X2I1, H0YJC0, H0YJD2, H0YJE9, H0YJS8, H0YJT1, H0YJW2, H0YJX2, H0YJY8
UniProt curated annotations — full annotation on UniProt →
Function. Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair. PSMC6 belongs to the heterohexameric ring of AAA (ATPases associated with diverse cellular activities) proteins that unfolds ubiquitinated target proteins that are concurrently translocated into a proteolytic chamber and degraded into peptides.
Subunit / interactions. Component of the 19S proteasome regulatory particle complex. The 26S proteasome consists of a 20S core particle (CP) and two 19S regulatory subunits (RP). The regulatory particle is made of a lid composed of 9 subunits, a base containing 6 ATPases including PSMC6 and few additional components. Interacts with PAAF1.
Subcellular location. Cytoplasm. Nucleus.
Similarity. Belongs to the AAA ATPase family.
RefSeq proteins (2): NP_001353343, NP_002797* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003593 | AAA+_ATPase | Domain |
| IPR003959 | ATPase_AAA_core | Domain |
| IPR003960 | ATPase_AAA_CS | Conserved_site |
| IPR012340 | NA-bd_OB-fold | Homologous_superfamily |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR032501 | Prot_ATP_ID_OB_2nd | Domain |
| IPR041569 | AAA_lid_3 | Domain |
| IPR050221 | 26S_Proteasome_ATPase | Family |
Pfam: PF00004, PF16450, PF17862
UniProt features (37 total): helix 13, strand 12, turn 6, modified residue 3, chain 1, binding site 1, sequence conflict 1
Structure
Experimental structures (PDB)
74 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8USB | ELECTRON MICROSCOPY | 2.73 |
| 9PDL | ELECTRON MICROSCOPY | 2.76 |
| 9E8I | ELECTRON MICROSCOPY | 2.87 |
| 9BV3 | ELECTRON MICROSCOPY | 2.9 |
| 9E8H | ELECTRON MICROSCOPY | 2.9 |
| 9PDI | ELECTRON MICROSCOPY | 2.98 |
| 6MSB | ELECTRON MICROSCOPY | 3 |
| 8CVT | ELECTRON MICROSCOPY | 3 |
| 9E8G | ELECTRON MICROSCOPY | 3.01 |
| 9PDN | ELECTRON MICROSCOPY | 3.04 |
| 8USC | ELECTRON MICROSCOPY | 3.1 |
| 9BV1 | ELECTRON MICROSCOPY | 3.1 |
| 9E8O | ELECTRON MICROSCOPY | 3.1 |
| 9E8Q | ELECTRON MICROSCOPY | 3.16 |
| 6MSD | ELECTRON MICROSCOPY | 3.2 |
| 6MSK | ELECTRON MICROSCOPY | 3.2 |
| 6MSE | ELECTRON MICROSCOPY | 3.3 |
| 6MSJ | ELECTRON MICROSCOPY | 3.3 |
| 9BW4 | ELECTRON MICROSCOPY | 3.3 |
| 9M2W | ELECTRON MICROSCOPY | 3.31 |
| 8JRI | ELECTRON MICROSCOPY | 3.4 |
| 9BV2 | ELECTRON MICROSCOPY | 3.4 |
| 9E8J | ELECTRON MICROSCOPY | 3.47 |
| 5GJR | ELECTRON MICROSCOPY | 3.5 |
| 6MSG | ELECTRON MICROSCOPY | 3.5 |
| 9UG9 | ELECTRON MICROSCOPY | 3.5 |
| 9PF1 | ELECTRON MICROSCOPY | 3.57 |
| 9E8L | ELECTRON MICROSCOPY | 3.59 |
| 5VFS | ELECTRON MICROSCOPY | 3.6 |
| 6MSH | ELECTRON MICROSCOPY | 3.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P62333-F1 | 86.98 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 174–181
Post-translational modifications (3): 72, 206, 244
Function
Pathways and Gene Ontology
Reactome pathways
68 pathways
| ID | Pathway |
|---|---|
| R-HSA-1169091 | Activation of NF-kappaB in B cells |
| R-HSA-1234176 | Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha |
| R-HSA-1236974 | ER-Phagosome pathway |
| R-HSA-1236978 | Cross-presentation of soluble exogenous antigens (endosomes) |
| R-HSA-174084 | Autodegradation of Cdh1 by Cdh1:APC/C |
| R-HSA-174113 | SCF-beta-TrCP mediated degradation of Emi1 |
| R-HSA-174154 | APC/C:Cdc20 mediated degradation of Securin |
| R-HSA-174178 | APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
| R-HSA-174184 | Cdc20:Phospho-APC/C mediated degradation of Cyclin A |
| R-HSA-180534 | Vpu mediated degradation of CD4 |
| R-HSA-180585 | Vif-mediated degradation of APOBEC3G |
| R-HSA-187577 | SCF(Skp2)-mediated degradation of p27/p21 |
| R-HSA-195253 | Degradation of beta-catenin by the destruction complex |
| R-HSA-202424 | Downstream TCR signaling |
| R-HSA-211733 | Regulation of activated PAK-2p34 by proteasome mediated degradation |
| R-HSA-2467813 | Separation of Sister Chromatids |
| R-HSA-2871837 | FCERI mediated NF-kB activation |
| R-HSA-349425 | Autodegradation of the E3 ubiquitin ligase COP1 |
| R-HSA-350562 | Regulation of ornithine decarboxylase (ODC) |
| R-HSA-382556 | ABC-family protein mediated transport |
| R-HSA-450408 | AUF1 (hnRNP D0) binds and destabilizes mRNA |
| R-HSA-4608870 | Asymmetric localization of PCP proteins |
| R-HSA-4641257 | Degradation of AXIN |
| R-HSA-4641258 | Degradation of DVL |
| R-HSA-5358346 | Hedgehog ligand biogenesis |
| R-HSA-5362768 | Hh mutants are degraded by ERAD |
| R-HSA-5607761 | Dectin-1 mediated noncanonical NF-kB signaling |
| R-HSA-5607764 | CLEC7A (Dectin-1) signaling |
| R-HSA-5610780 | Degradation of GLI1 by the proteasome |
| R-HSA-5610783 | Degradation of GLI2 by the proteasome |
MSigDB gene sets: 350 (showing top):
GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, RNGTGGGC_UNKNOWN, REACTOME_DNA_REPLICATION, REACTOME_SIGNALING_BY_NOTCH, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1, REACTOME_INNATE_IMMUNE_SYSTEM, MORF_MBD4, MORF_RAB5A, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, KEGG_PROTEASOME, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION
GO Biological Process (5): ERAD pathway (GO:0036503), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), positive regulation of RNA polymerase II transcription preinitiation complex assembly (GO:0045899), positive regulation of inclusion body assembly (GO:0090261), positive regulation of proteasomal protein catabolic process (GO:1901800)
GO Molecular Function (7): ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), protein-macromolecule adaptor activity (GO:0030674), proteasome-activating activity (GO:0036402), identical protein binding (GO:0042802), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (11): proteasome complex (GO:0000502), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), proteasome regulatory particle, base subcomplex (GO:0008540), membrane (GO:0016020), inclusion body (GO:0016234), proteasome accessory complex (GO:0022624), cytosolic proteasome complex (GO:0031597), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-18 pathways:
| Category | Pathways |
|---|---|
| Antigen processing-Cross presentation | 2 |
| APC/C-mediated degradation of cell cycle proteins | 2 |
| Host Interactions of HIV factors | 2 |
| Downstream signaling events of B Cell Receptor (BCR) | 1 |
| Cellular response to hypoxia | 1 |
| Regulation of APC/C activators between G1/S and early anaphase | 1 |
| APC/C:Cdc20 mediated degradation of mitotic proteins | 1 |
| APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint | 1 |
| Cyclin E associated events during G1/S transition | 1 |
| Cyclin A:Cdk2-associated events at S phase entry | 1 |
| Signaling by WNT | 1 |
| TCR signaling | 1 |
| Regulation of Apoptosis | 1 |
| Mitotic Anaphase | 1 |
| Fc epsilon receptor (FCERI) signaling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| proteasomal protein catabolic process | 4 |
| cellular anatomical structure | 4 |
| intracellular anatomical structure | 3 |
| ATP-dependent activity | 2 |
| protein binding | 2 |
| protein-containing complex | 2 |
| proteasome complex | 2 |
| response to endoplasmic reticulum stress | 1 |
| response to chemical | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| positive regulation of protein-containing complex assembly | 1 |
| regulation of RNA polymerase II transcription preinitiation complex assembly | 1 |
| RNA polymerase II preinitiation complex assembly | 1 |
| positive regulation of transcription initiation by RNA polymerase II | 1 |
| positive regulation of cellular component biogenesis | 1 |
| positive regulation of cellular component organization | 1 |
| inclusion body assembly | 1 |
| regulation of inclusion body assembly | 1 |
| positive regulation of protein catabolic process | 1 |
| regulation of proteasomal protein catabolic process | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| molecular adaptor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| intracellular protein-containing complex | 1 |
| endopeptidase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| proteasome regulatory particle | 1 |
| cytosol | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
371 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PSMC3 | PSMC6 | psi-mi:“MI:0915”(physical association) | 0.950 |
| PSMC6 | PSMC3 | psi-mi:“MI:0915”(physical association) | 0.950 |
| PSMC6 | PSMC3 | psi-mi:“MI:0407”(direct interaction) | 0.950 |
| PSMC3 | PSMC6 | psi-mi:“MI:0407”(direct interaction) | 0.950 |
| PSMC6 | PSMC3 | psi-mi:“MI:0914”(association) | 0.950 |
| PSMD9 | PSMC6 | psi-mi:“MI:0915”(physical association) | 0.940 |
| PSMC6 | PSMD9 | psi-mi:“MI:0915”(physical association) | 0.940 |
| PSMD9 | PSMC3 | psi-mi:“MI:0914”(association) | 0.940 |
| PSMC5 | PSMC6 | psi-mi:“MI:0915”(physical association) | 0.940 |
| PSMC1 | PSMC6 | psi-mi:“MI:0915”(physical association) | 0.900 |
| UCHL5 | PSMD11 | psi-mi:“MI:0914”(association) | 0.840 |
| PSMC4 | PSMC6 | psi-mi:“MI:0915”(physical association) | 0.820 |
| PSMD10 | PSMD11 | psi-mi:“MI:0914”(association) | 0.800 |
| CRK | PSMC6 | psi-mi:“MI:0915”(physical association) | 0.780 |
BioGRID (685): PSMC6 (Affinity Capture-MS), PSMC6 (Two-hybrid), PSMC6 (Two-hybrid), PSMD9 (Two-hybrid), SDCBP (Two-hybrid), CYB5R2 (Two-hybrid), CCDC146 (Two-hybrid), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS)
ESM2 similar proteins: A3CV35, A4G0S4, A6UQT3, A6VHR1, A7I8B8, A9A916, B8GGN4, O17071, O18413, O26824, O74445, O74894, P34124, P41836, P42811, P43686, P46502, P46507, P53549, P54775, P54778, P54814, P62194, P62195, P62196, P62197, P62198, P62333, P62334, P62335, Q01939, Q0W257, Q25544, Q2FQ56, Q2KIW6, Q3T030, Q4R7L3, Q54PJ1, Q63570, Q6LWR0
Diamond homologs: A0A061IR73, A0A7N9VSG0, A3CV35, A4G0S4, A6UQT3, A6VHR1, A7I8B8, A7YSY2, A9A916, B4U7U4, B9KXV3, C5A6P8, D4A2B7, D4GUJ7, G3GXG9, O05209, O14325, O15381, O18413, O26824, O28972, O43933, O57940, O60058, O67077, P03974, P23787, P25694, P32794, P41836, P46462, P46468, P46470, P54609, P54774, P54777, P54811, P54812, P54814, P55072
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PSMC6 | “form complex” | “26S Proteasome” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 113 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Proteasome assembly | 22 | 57.5× | 1e-31 |
| Regulation of activated PAK-2p34 by proteasome mediated degradation | 16 | 57.1× | 5e-23 |
| Vpu mediated degradation of CD4 | 16 | 54.5× | 7e-23 |
| Autodegradation of the E3 ubiquitin ligase COP1 | 16 | 54.5× | 7e-23 |
| Ubiquitin-dependent degradation of Cyclin D | 16 | 54.5× | 7e-23 |
| AUF1 (hnRNP D0) binds and destabilizes mRNA | 17 | 54.1× | 8e-24 |
| Regulation of ornithine decarboxylase (ODC) | 15 | 52.3× | 1e-21 |
| Cross-presentation of soluble exogenous antigens (endosomes) | 16 | 52.1× | 1e-22 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| proteasome-mediated ubiquitin-dependent protein catabolic process | 21 | 12.6× | 8e-15 |
| ubiquitin-dependent protein catabolic process | 9 | 7.7× | 7e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
24 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 11 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1671 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:52707300:GGAGT:G | donor_gain | 1.0000 |
| 14:52707301:GAGT:G | donor_gain | 1.0000 |
| 14:52707301:GAGTG:G | donor_gain | 1.0000 |
| 14:52707302:A:T | donor_gain | 1.0000 |
| 14:52707303:GT:G | donor_gain | 1.0000 |
| 14:52707305:G:GG | donor_gain | 1.0000 |
| 14:52707305:GTGA:G | donor_loss | 1.0000 |
| 14:52707306:TGAG:T | donor_loss | 1.0000 |
| 14:52707307:GAGTG:G | donor_loss | 1.0000 |
| 14:52708307:A:AG | acceptor_gain | 1.0000 |
| 14:52708308:G:GA | acceptor_gain | 1.0000 |
| 14:52708308:GT:G | acceptor_gain | 1.0000 |
| 14:52708308:GTA:G | acceptor_gain | 1.0000 |
| 14:52708386:CAGG:C | donor_loss | 1.0000 |
| 14:52708387:AG:A | donor_loss | 1.0000 |
| 14:52708389:G:A | donor_loss | 1.0000 |
| 14:52708390:T:G | donor_loss | 1.0000 |
| 14:52708478:CTTA:C | acceptor_loss | 1.0000 |
| 14:52708479:TTAG:T | acceptor_loss | 1.0000 |
| 14:52708480:TAGAT:T | acceptor_loss | 1.0000 |
| 14:52708481:A:AG | acceptor_gain | 1.0000 |
| 14:52708481:AGA:A | acceptor_loss | 1.0000 |
| 14:52708482:G:A | acceptor_loss | 1.0000 |
| 14:52708482:G:GG | acceptor_gain | 1.0000 |
| 14:52708482:GATC:G | acceptor_gain | 1.0000 |
| 14:52708521:AT:A | donor_gain | 1.0000 |
| 14:52708523:G:GA | donor_loss | 1.0000 |
| 14:52708523:G:GG | donor_gain | 1.0000 |
| 14:52708524:T:G | donor_loss | 1.0000 |
| 14:52708762:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
2554 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:52708383:G:A | G54R | 1.000 |
| 14:52708383:G:C | G54R | 1.000 |
| 14:52708383:G:T | G54W | 1.000 |
| 14:52708384:G:A | G54E | 1.000 |
| 14:52708384:G:T | G54V | 1.000 |
| 14:52708489:G:C | G58R | 1.000 |
| 14:52708490:G:A | G58D | 1.000 |
| 14:52708770:T:A | V71D | 1.000 |
| 14:52708784:G:A | G76R | 1.000 |
| 14:52708784:G:C | G76R | 1.000 |
| 14:52708785:G:A | G76E | 1.000 |
| 14:52708797:T:A | V80D | 1.000 |
| 14:52711135:T:A | V98D | 1.000 |
| 14:52711138:C:A | A99D | 1.000 |
| 14:52711141:T:G | L100W | 1.000 |
| 14:52711156:T:C | L105P | 1.000 |
| 14:52711439:T:A | V119D | 1.000 |
| 14:52711490:G:A | G136E | 1.000 |
| 14:52711492:G:A | G137R | 1.000 |
| 14:52711492:G:C | G137R | 1.000 |
| 14:52711493:G:A | G137E | 1.000 |
| 14:52711496:T:C | L138P | 1.000 |
| 14:52713885:T:A | I149K | 1.000 |
| 14:52713897:T:C | L153P | 1.000 |
| 14:52713914:T:C | F159L | 1.000 |
| 14:52713915:T:C | F159S | 1.000 |
| 14:52713916:T:A | F159L | 1.000 |
| 14:52713916:T:G | F159L | 1.000 |
| 14:52713927:G:T | G163V | 1.000 |
| 14:52713930:T:A | I164K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000077396 (14:52710716 G>A), RS1000367724 (14:52717302 T>C), RS1000402885 (14:52725205 G>C), RS1000424289 (14:52724540 A>G), RS1000455248 (14:52724868 G>A), RS1000532591 (14:52713386 A>G), RS1000604726 (14:52713144 C>A), RS1000978458 (14:52727729 A>C,T), RS1001050942 (14:52712690 T>G), RS1001071002 (14:52706070 G>A,C,T), RS1001078675 (14:52712298 A>G), RS1001220542 (14:52707029 G>A,T), RS1001343293 (14:52719310 G>A,C), RS1001436994 (14:52706300 C>T), RS1001499010 (14:52720622 G>A,T)
Disease associations
OMIM: gene MIM:602708 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001942_15 | Prostate cancer | 2.000000e-14 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2364701 (PROTEIN COMPLEX), CHEMBL3831206 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 25,628 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL325041 | BORTEZOMIB | 4 | 13,120 |
| CHEMBL451887 | CARFILZOMIB | 4 | 12,508 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
64 potent at pChembl≥5 of 67 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.62 | IC50 | 2.4 | nM | BORTEZOMIB |
| 8.59 | IC50 | 2.56 | nM | BORTEZOMIB |
| 8.57 | IC50 | 2.7 | nM | CHEMBL3237863 |
| 8.47 | IC50 | 3.4 | nM | CHEMBL6143686 |
| 8.41 | IC50 | 3.9 | nM | CHEMBL3237862 |
| 8.39 | IC50 | 4.1 | nM | CHEMBL3237864 |
| 8.39 | IC50 | 4.1 | nM | CHEMBL3237867 |
| 8.32 | IC50 | 4.8 | nM | CHEMBL3237873 |
| 8.29 | IC50 | 5.1 | nM | CHEMBL3237865 |
| 8.24 | IC50 | 5.7 | nM | CHEMBL3237866 |
| 8.24 | IC50 | 5.7 | nM | CHEMBL3237860 |
| 8.23 | IC50 | 5.9 | nM | CHEMBL3237868 |
| 8.15 | IC50 | 7 | nM | BORTEZOMIB |
| 8.15 | IC50 | 7.1 | nM | CHEMBL3237870 |
| 8.15 | IC50 | 7.14 | nM | BORTEZOMIB |
| 8.12 | IC50 | 7.5 | nM | CHEMBL3237871 |
| 8.11 | IC50 | 7.7 | nM | CHEMBL3237874 |
| 8.11 | IC50 | 7.8 | nM | CHEMBL3237869 |
| 8.07 | IC50 | 8.6 | nM | CARFILZOMIB |
| 7.54 | IC50 | 29 | nM | CHEMBL3237861 |
| 7.34 | IC50 | 46 | nM | CHEMBL3237867 |
| 7.27 | IC50 | 54 | nM | CHEMBL3237872 |
| 7.12 | IC50 | 75 | nM | CHEMBL3237865 |
| 7.12 | IC50 | 76 | nM | CHEMBL3237866 |
| 6.96 | IC50 | 110 | nM | CHEMBL3262766 |
| 6.92 | IC50 | 120 | nM | CHEMBL3237864 |
| 6.92 | IC50 | 120 | nM | BORTEZOMIB |
| 6.89 | IC50 | 130 | nM | CHEMBL3237869 |
| 6.85 | IC50 | 140 | nM | CHEMBL3237862 |
| 6.82 | IC50 | 150 | nM | CHEMBL3237863 |
| 6.79 | Kd | 164.1 | nM | CHEMBL5653589 |
| 6.79 | ED50 | 164.1 | nM | CHEMBL5653589 |
| 6.77 | IC50 | 170 | nM | CHEMBL3237873 |
| 6.77 | IC50 | 170 | nM | CHEMBL3262765 |
| 6.72 | IC50 | 190 | nM | CHEMBL3262758 |
| 6.68 | IC50 | 210 | nM | CHEMBL3237870 |
| 6.66 | IC50 | 220 | nM | CHEMBL3262756 |
| 6.60 | IC50 | 250 | nM | CHEMBL3237868 |
| 6.47 | IC50 | 340 | nM | CHEMBL3262752 |
| 6.47 | IC50 | 340 | nM | CHEMBL3262755 |
| 6.44 | IC50 | 360 | nM | CHEMBL3262757 |
| 6.42 | IC50 | 380 | nM | CHEMBL3262754 |
| 6.36 | IC50 | 440 | nM | CHEMBL3262753 |
| 6.30 | IC50 | 500 | nM | CHEMBL3237872 |
| 6.20 | IC50 | 630 | nM | CHEMBL3262762 |
| 6.02 | IC50 | 950 | nM | CHEMBL3262761 |
| 6.00 | IC50 | 1000 | nM | CHEMBL3237871 |
| 5.96 | IC50 | 1100 | nM | CHEMBL3237862 |
| 5.85 | IC50 | 1400 | nM | BELACTOSIN A |
| 5.84 | IC50 | 1440 | nM | BELACTOSIN A |
PubChem BioAssay actives
61 with measured affinity, of 137 total; 33 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| Bortezomib | 1985684: Inhibition of 26S proteasome (unknown origin) | ic50 | 0.0024 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0027 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0039 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0041 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]pentanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0041 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-(4-phenylmethoxybutyl)butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0048 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]pentanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0051 | uM |
| (2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]pentanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0057 | uM |
| benzyl N-[(2S)-1-[[(2R)-1-[(1R,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]-4-phenylbutan-2-yl]amino]-1-oxopropan-2-yl]carbamate | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0057 | uM |
| (2S)-2-[(2,5-dichlorobenzoyl)amino]-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0059 | uM |
| (2S)-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]-2-(pyrazine-2-carbonylamino)butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0071 | uM |
| (2S)-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]-2-[(6-phenylpyridine-2-carbonyl)amino]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0075 | uM |
| [(1R)-1-[[(2S)-2-acetamido-4-oxo-4-[[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]amino]butanoyl]amino]-3-methylbutyl]boronic acid | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0077 | uM |
| (2S)-2-benzamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0078 | uM |
| Carfilzomib | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.0086 | uM |
| (2R,3S)-3-[(2S)-butan-2-yl]-4-oxo-N-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]oxetane-2-carboxamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0290 | uM |
| (2S)-2-acetamido-N’-methyl-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]butanediamide | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 0.0540 | uM |
| N-[(1R)-3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]naphthalene-2-carboxamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.1100 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149120: Binding affinity to human PSMC6 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1641 | uM |
| N-[(1R)-3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]-4-(trifluoromethyl)benzamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.1700 | uM |
| N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]naphthalene-2-carboxamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.1900 | uM |
| N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]-4-(trifluoromethyl)benzamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.2200 | uM |
| N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]pyridine-3-carboxamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.3400 | uM |
| 4-methoxy-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.3400 | uM |
| 4-cyano-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.3600 | uM |
| 4-fluoro-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.3800 | uM |
| N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.4400 | uM |
| N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]oxane-4-carboxamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.6300 | uM |
| N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]thiophene-2-carboxamide | 1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence method | ic50 | 0.9500 | uM |
| (2S)-2-[[(2S)-2-aminopropanoyl]amino]-3-[(1S,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]propanoic acid | 1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrate | ic50 | 1.4000 | uM |
| (2S)-2-acetamido-N-[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide | 1152964: Inhibition of chymotrypsin-like of human 20S proteasome using chromophoric Suc-LLVY-AMC as substrate after 60 mins by fluorescence assay | ic50 | 2.3000 | uM |
| N-[3-(2-oxo-1,3,4-oxathiazol-5-yl)phenyl]acetamide | 1137840: Inhibition of chymotrypsin-like activity of 26S proteasome in intact human Karpas 1106p cells assessed as substrate hydrolysis using Suc-LLVY-(D)-aminoluciferin as substrate after 3 hrs by cell-based Proteasome-Glo assay | ec50 | 4.2000 | uM |
| (2S)-2-acetamido-N-[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]-N’-(4-phenylmethoxybutyl)butanediamide | 1152964: Inhibition of chymotrypsin-like of human 20S proteasome using chromophoric Suc-LLVY-AMC as substrate after 60 mins by fluorescence assay | ic50 | 5.7000 | uM |
CTD chemical–gene interactions
52 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects binding, increases reaction, decreases expression, affects cotreatment, increases abundance (+1 more) | 4 |
| Valproic Acid | decreases expression, decreases methylation, affects cotreatment, increases expression | 4 |
| Air Pollutants | increases oxidation, affects expression, decreases expression, affects cotreatment, increases abundance | 3 |
| Arsenic | increases methylation, affects cotreatment, increases abundance, increases expression | 2 |
| Ozone | affects cotreatment, increases oxidation, increases abundance, affects expression | 2 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | decreases expression | 1 |
| nobiletin | decreases expression, decreases reaction | 1 |
| sodium arsenate | decreases expression, decreases reaction | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| kojic acid | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| methacrylaldehyde | increases oxidation, increases abundance, affects cotreatment | 1 |
| benzyloxycarbonylleucyl-leucyl-leucine aldehyde | increases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| clothianidin | decreases expression | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | increases expression | 1 |
| elesclomol | increases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol S | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | increases expression | 1 |
ChEMBL screening assays
27 unique, capped per target: 27 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3222879 | Binding | Inhibition of human 20S proteasome using Suc-LLVY-AMC as substrate preincubated for 30 mins followed by substrate addition measured after 90 mins by fluorescence assay | Oxathiazole-2-one derivative of bortezomib: Synthesis, stability and proteasome inhibition activity — Medchemcomm |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.