PSMC6

gene
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Also known as p42RPT5

Summary

PSMC6 (proteasome 26S subunit, ATPase 6, HGNC:9553) is a protein-coding gene on chromosome 14q22.1, encoding 26S proteasome regulatory subunit 10B (P62333). Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. It is a common-essential gene (DepMap: required in 99.9% of cancer cell lines).

The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes one of the ATPase subunits, a member of the triple-A family of ATPases which have a chaperone-like activity. Pseudogenes have been identified on chromosomes 8 and 12.

Source: NCBI Gene 5706 — RefSeq curated summary.

At a glance

  • GWAS associations: 1
  • Clinical variants (ClinVar): 24 total
  • Druggable target: yes — 2 molecules with ChEMBL bioactivity
  • Cancer dependency (DepMap): dependent in 99.9% of screened cell lines (common-essential)
  • MANE Select transcript: NM_002806

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9553
Approved symbolPSMC6
Nameproteasome 26S subunit, ATPase 6
Location14q22.1
Locus typegene with protein product
StatusApproved
Aliasesp42, RPT5
Ensembl geneENSG00000100519
Ensembl biotypeprotein_coding
OMIM602708
Entrez5706

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 15 protein_coding, 6 retained_intron, 6 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined

ENST00000445930, ENST00000458604, ENST00000551328, ENST00000553798, ENST00000553899, ENST00000554044, ENST00000554952, ENST00000554956, ENST00000555175, ENST00000555339, ENST00000555887, ENST00000556813, ENST00000557085, ENST00000557240, ENST00000557517, ENST00000557557, ENST00000557632, ENST00000612399, ENST00000886147, ENST00000886148, ENST00000886149, ENST00000886150, ENST00000886151, ENST00000886152, ENST00000929612, ENST00000929614, ENST00000968040, ENST00000968041, ENST00000968042

RefSeq mRNA: 2 — MANE Select: NM_002806 NM_001366414, NM_002806

CCDS: CCDS9710

Canonical transcript exons

ENST00000445930 — 14 exons

ExonStartEnd
ENSE000006574525271822952718352
ENSE000006574545271897752719038
ENSE000006574565272086152720981
ENSE000006574585272111052721190
ENSE000010934665272749952728590
ENSE000035679985270830952708388
ENSE000035860465271388152713968
ENSE000035889875270848352708522
ENSE000036337615271808152718142
ENSE000036778835271141052711524
ENSE000036804705270876452708816
ENSE000036937955271110152711168
ENSE000036959615270720052707304
ENSE000037840165272396552724036

Expression profiles

Bgee: expression breadth ubiquitous, 288 present calls, max score 98.79.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 65.6621 / max 1240.9486, expressed in 1814 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
13961859.61301814
1396175.88911658
1396210.113012
1396200.047010

Top tissues by expression

288 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
esophagus squamous epitheliumUBERON:000692098.79gold quality
buccal mucosa cellCL:000233698.37gold quality
palpebral conjunctivaUBERON:000181298.22gold quality
epithelium of nasopharynxUBERON:000195198.17gold quality
amniotic fluidUBERON:000017398.15gold quality
tibiaUBERON:000097998.14gold quality
germinal epithelium of ovaryUBERON:000130498.11gold quality
visceral pleuraUBERON:000240198.10gold quality
parietal pleuraUBERON:000240098.08gold quality
mucosa of paranasal sinusUBERON:000503097.89gold quality
pleuraUBERON:000097797.85gold quality
adrenal tissueUBERON:001830397.85gold quality
oral cavityUBERON:000016797.78gold quality
squamous epitheliumUBERON:000691497.71gold quality
endometriumUBERON:000129597.66gold quality
epithelium of esophagusUBERON:000197697.64gold quality
gastrocnemiusUBERON:000138897.56gold quality
calcaneal tendonUBERON:000370197.53gold quality
blood vessel layerUBERON:000479797.46gold quality
penisUBERON:000098997.42gold quality
muscle of legUBERON:000138397.42gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451197.42gold quality
cartilage tissueUBERON:000241897.32gold quality
islet of LangerhansUBERON:000000697.15gold quality
lower esophagus mucosaUBERON:003583497.11gold quality
seminal vesicleUBERON:000099897.09gold quality
esophagus mucosaUBERON:000246997.06gold quality
rectumUBERON:000105297.05gold quality
muscle organUBERON:000163097.02gold quality
endothelial cellCL:000011597.00gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ATF2, CEBPB, FOS, HIF1A, JUN, TFAP2A, TP53

miRNA regulators (miRDB)

35 targeting PSMC6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-568899.9673.234504
HSA-MIR-495-3P99.9672.814197
HSA-MIR-570-3P99.9672.414910
HSA-MIR-146A-5P99.9668.93988
HSA-MIR-146B-5P99.9669.13977
HSA-MIR-7153-5P99.9468.891006
HSA-MIR-568099.9169.833421
HSA-MIR-368699.9070.532432
HSA-MIR-469899.8471.414303
HSA-MIR-4659A-3P99.8072.624248
HSA-MIR-4659B-3P99.8072.624248
HSA-MIR-489-3P99.8066.46839
HSA-MIR-204-5P99.7971.622439
HSA-MIR-211-5P99.7971.652440
HSA-MIR-323A-3P99.7970.301739
HSA-MIR-2681-5P99.7567.641655
HSA-MIR-3913-3P99.7466.53938
HSA-MIR-891B99.5969.811083
HSA-MIR-1212399.5271.792990
HSA-MIR-302B-5P99.5069.491857
HSA-MIR-302D-5P99.5069.341863
HSA-MIR-391599.4568.491905
HSA-MIR-4735-5P99.4368.491780
HSA-MIR-183-3P99.4169.411598
HSA-MIR-318299.4068.152454
HSA-MIR-16-2-3P99.2970.601954
HSA-MIR-195-3P99.2970.611954
HSA-MIR-3160-5P99.2869.071938
HSA-MIR-806599.1970.381289
HSA-MIR-323B-3P99.1468.89725

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 99.9% of screened cell lines, common-essential.

Literature-anchored findings (GeneRIF, showing 7)

  • N protein of SARS Coronavirus interacts with the host cell proteasome subunit p42. (PMID:20478047)
  • Evidence of a sex-specific association of PSMC6 genetic variants with subtypes of juvenile idiopathic arthritis. (PMID:24875235)
  • Advanced oxidation protein products down-regulate the expression of calcium transport channels through p44/42 MAPK signaling mechanisms in the small intestinal epithelium. (PMID:25801217)
  • Our results provide evidence on new T1DM-susceptible loci in the PSMA3, PSMA6 and PSMC6 proteasome genes and give a new insight into the T1DM pathogenesis (PMID:26661414)
  • PSMC6 was differently expressed in melanosis coli tissues.PSMC6 expression was related to cell apoptosis. (PMID:30559147)
  • PSMC6 promotes osteoblast apoptosis through inhibiting PI3K/AKT signaling pathway activation in ovariectomy-induced osteoporosis mouse model. (PMID:32017075)
  • The Silence of PSMC6 Inhibits Cell Growth and Metastasis in Lung Adenocarcinoma. (PMID:34239933)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_reriopsmc6ENSDARG00000037038
mus_musculusPsmc6ENSMUSG00000021832
rattus_norvegicusPsmc6ENSRNOG00000007203
drosophila_melanogasterRpt4FBGN0028685
drosophila_melanogasterRpt4RFBGN0036224
caenorhabditis_elegansWBGENE00004504

Paralogs (5): PSMC4 (ENSG00000013275), PSMC5 (ENSG00000087191), PSMC1 (ENSG00000100764), PSMC2 (ENSG00000161057), PSMC3 (ENSG00000165916)

Protein

Protein identifiers

26S proteasome regulatory subunit 10BP62333 (reviewed: P62333)

Alternative names: 26S proteasome AAA-ATPase subunit RPT4, Proteasome 26S subunit ATPase 6, Proteasome subunit p42

All UniProt accessions (10): P62333, A0A087X2I1, H0YJC0, H0YJD2, H0YJE9, H0YJS8, H0YJT1, H0YJW2, H0YJX2, H0YJY8

UniProt curated annotations — full annotation on UniProt →

Function. Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair. PSMC6 belongs to the heterohexameric ring of AAA (ATPases associated with diverse cellular activities) proteins that unfolds ubiquitinated target proteins that are concurrently translocated into a proteolytic chamber and degraded into peptides.

Subunit / interactions. Component of the 19S proteasome regulatory particle complex. The 26S proteasome consists of a 20S core particle (CP) and two 19S regulatory subunits (RP). The regulatory particle is made of a lid composed of 9 subunits, a base containing 6 ATPases including PSMC6 and few additional components. Interacts with PAAF1.

Subcellular location. Cytoplasm. Nucleus.

Similarity. Belongs to the AAA ATPase family.

RefSeq proteins (2): NP_001353343, NP_002797* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR003593AAA+_ATPaseDomain
IPR003959ATPase_AAA_coreDomain
IPR003960ATPase_AAA_CSConserved_site
IPR012340NA-bd_OB-foldHomologous_superfamily
IPR027417P-loop_NTPaseHomologous_superfamily
IPR032501Prot_ATP_ID_OB_2ndDomain
IPR041569AAA_lid_3Domain
IPR05022126S_Proteasome_ATPaseFamily

Pfam: PF00004, PF16450, PF17862

UniProt features (37 total): helix 13, strand 12, turn 6, modified residue 3, chain 1, binding site 1, sequence conflict 1

Structure

Experimental structures (PDB)

74 structures, top 30 by resolution.

PDBMethodResolution (Å)
8USBELECTRON MICROSCOPY2.73
9PDLELECTRON MICROSCOPY2.76
9E8IELECTRON MICROSCOPY2.87
9BV3ELECTRON MICROSCOPY2.9
9E8HELECTRON MICROSCOPY2.9
9PDIELECTRON MICROSCOPY2.98
6MSBELECTRON MICROSCOPY3
8CVTELECTRON MICROSCOPY3
9E8GELECTRON MICROSCOPY3.01
9PDNELECTRON MICROSCOPY3.04
8USCELECTRON MICROSCOPY3.1
9BV1ELECTRON MICROSCOPY3.1
9E8OELECTRON MICROSCOPY3.1
9E8QELECTRON MICROSCOPY3.16
6MSDELECTRON MICROSCOPY3.2
6MSKELECTRON MICROSCOPY3.2
6MSEELECTRON MICROSCOPY3.3
6MSJELECTRON MICROSCOPY3.3
9BW4ELECTRON MICROSCOPY3.3
9M2WELECTRON MICROSCOPY3.31
8JRIELECTRON MICROSCOPY3.4
9BV2ELECTRON MICROSCOPY3.4
9E8JELECTRON MICROSCOPY3.47
5GJRELECTRON MICROSCOPY3.5
6MSGELECTRON MICROSCOPY3.5
9UG9ELECTRON MICROSCOPY3.5
9PF1ELECTRON MICROSCOPY3.57
9E8LELECTRON MICROSCOPY3.59
5VFSELECTRON MICROSCOPY3.6
6MSHELECTRON MICROSCOPY3.6

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P62333-F186.980.40

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (1): 174–181

Post-translational modifications (3): 72, 206, 244

Function

Pathways and Gene Ontology

Reactome pathways

68 pathways

IDPathway
R-HSA-1169091Activation of NF-kappaB in B cells
R-HSA-1234176Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
R-HSA-1236974ER-Phagosome pathway
R-HSA-1236978Cross-presentation of soluble exogenous antigens (endosomes)
R-HSA-174084Autodegradation of Cdh1 by Cdh1:APC/C
R-HSA-174113SCF-beta-TrCP mediated degradation of Emi1
R-HSA-174154APC/C:Cdc20 mediated degradation of Securin
R-HSA-174178APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-174184Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-HSA-180534Vpu mediated degradation of CD4
R-HSA-180585Vif-mediated degradation of APOBEC3G
R-HSA-187577SCF(Skp2)-mediated degradation of p27/p21
R-HSA-195253Degradation of beta-catenin by the destruction complex
R-HSA-202424Downstream TCR signaling
R-HSA-211733Regulation of activated PAK-2p34 by proteasome mediated degradation
R-HSA-2467813Separation of Sister Chromatids
R-HSA-2871837FCERI mediated NF-kB activation
R-HSA-349425Autodegradation of the E3 ubiquitin ligase COP1
R-HSA-350562Regulation of ornithine decarboxylase (ODC)
R-HSA-382556ABC-family protein mediated transport
R-HSA-450408AUF1 (hnRNP D0) binds and destabilizes mRNA
R-HSA-4608870Asymmetric localization of PCP proteins
R-HSA-4641257Degradation of AXIN
R-HSA-4641258Degradation of DVL
R-HSA-5358346Hedgehog ligand biogenesis
R-HSA-5362768Hh mutants are degraded by ERAD
R-HSA-5607761Dectin-1 mediated noncanonical NF-kB signaling
R-HSA-5607764CLEC7A (Dectin-1) signaling
R-HSA-5610780Degradation of GLI1 by the proteasome
R-HSA-5610783Degradation of GLI2 by the proteasome

MSigDB gene sets: 350 (showing top): GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, RNGTGGGC_UNKNOWN, REACTOME_DNA_REPLICATION, REACTOME_SIGNALING_BY_NOTCH, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1, REACTOME_INNATE_IMMUNE_SYSTEM, MORF_MBD4, MORF_RAB5A, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, KEGG_PROTEASOME, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION

GO Biological Process (5): ERAD pathway (GO:0036503), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), positive regulation of RNA polymerase II transcription preinitiation complex assembly (GO:0045899), positive regulation of inclusion body assembly (GO:0090261), positive regulation of proteasomal protein catabolic process (GO:1901800)

GO Molecular Function (7): ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), protein-macromolecule adaptor activity (GO:0030674), proteasome-activating activity (GO:0036402), identical protein binding (GO:0042802), nucleotide binding (GO:0000166), protein binding (GO:0005515)

GO Cellular Component (11): proteasome complex (GO:0000502), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), proteasome regulatory particle, base subcomplex (GO:0008540), membrane (GO:0016020), inclusion body (GO:0016234), proteasome accessory complex (GO:0022624), cytosolic proteasome complex (GO:0031597), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)

Reactome top-level categories

Rollup of top-18 pathways:

CategoryPathways
Antigen processing-Cross presentation2
APC/C-mediated degradation of cell cycle proteins2
Host Interactions of HIV factors2
Downstream signaling events of B Cell Receptor (BCR)1
Cellular response to hypoxia1
Regulation of APC/C activators between G1/S and early anaphase1
APC/C:Cdc20 mediated degradation of mitotic proteins1
APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint1
Cyclin E associated events during G1/S transition1
Cyclin A:Cdk2-associated events at S phase entry1
Signaling by WNT1
TCR signaling1
Regulation of Apoptosis1
Mitotic Anaphase1
Fc epsilon receptor (FCERI) signaling1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
proteasomal protein catabolic process4
cellular anatomical structure4
intracellular anatomical structure3
ATP-dependent activity2
protein binding2
protein-containing complex2
proteasome complex2
response to endoplasmic reticulum stress1
response to chemical1
ubiquitin-dependent protein catabolic process1
positive regulation of protein-containing complex assembly1
regulation of RNA polymerase II transcription preinitiation complex assembly1
RNA polymerase II preinitiation complex assembly1
positive regulation of transcription initiation by RNA polymerase II1
positive regulation of cellular component biogenesis1
positive regulation of cellular component organization1
inclusion body assembly1
regulation of inclusion body assembly1
positive regulation of protein catabolic process1
regulation of proteasomal protein catabolic process1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
ribonucleoside triphosphate phosphatase activity1
molecular adaptor activity1
polypeptide conformation or assembly isomerase activity1
nucleoside phosphate binding1
heterocyclic compound binding1
binding1
intracellular protein-containing complex1
endopeptidase complex1
intracellular membrane-bounded organelle1
nuclear lumen1
cytoplasm1
proteasome regulatory particle1
cytosol1
extracellular vesicle1

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

371 interactions, top by confidence:

ABTypeScore
PSMC3PSMC6psi-mi:“MI:0915”(physical association)0.950
PSMC6PSMC3psi-mi:“MI:0915”(physical association)0.950
PSMC6PSMC3psi-mi:“MI:0407”(direct interaction)0.950
PSMC3PSMC6psi-mi:“MI:0407”(direct interaction)0.950
PSMC6PSMC3psi-mi:“MI:0914”(association)0.950
PSMD9PSMC6psi-mi:“MI:0915”(physical association)0.940
PSMC6PSMD9psi-mi:“MI:0915”(physical association)0.940
PSMD9PSMC3psi-mi:“MI:0914”(association)0.940
PSMC5PSMC6psi-mi:“MI:0915”(physical association)0.940
PSMC1PSMC6psi-mi:“MI:0915”(physical association)0.900
UCHL5PSMD11psi-mi:“MI:0914”(association)0.840
PSMC4PSMC6psi-mi:“MI:0915”(physical association)0.820
PSMD10PSMD11psi-mi:“MI:0914”(association)0.800
CRKPSMC6psi-mi:“MI:0915”(physical association)0.780

BioGRID (685): PSMC6 (Affinity Capture-MS), PSMC6 (Two-hybrid), PSMC6 (Two-hybrid), PSMD9 (Two-hybrid), SDCBP (Two-hybrid), CYB5R2 (Two-hybrid), CCDC146 (Two-hybrid), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS), PSMC6 (Affinity Capture-MS)

ESM2 similar proteins: A3CV35, A4G0S4, A6UQT3, A6VHR1, A7I8B8, A9A916, B8GGN4, O17071, O18413, O26824, O74445, O74894, P34124, P41836, P42811, P43686, P46502, P46507, P53549, P54775, P54778, P54814, P62194, P62195, P62196, P62197, P62198, P62333, P62334, P62335, Q01939, Q0W257, Q25544, Q2FQ56, Q2KIW6, Q3T030, Q4R7L3, Q54PJ1, Q63570, Q6LWR0

Diamond homologs: A0A061IR73, A0A7N9VSG0, A3CV35, A4G0S4, A6UQT3, A6VHR1, A7I8B8, A7YSY2, A9A916, B4U7U4, B9KXV3, C5A6P8, D4A2B7, D4GUJ7, G3GXG9, O05209, O14325, O15381, O18413, O26824, O28972, O43933, O57940, O60058, O67077, P03974, P23787, P25694, P32794, P41836, P46462, P46468, P46470, P54609, P54774, P54777, P54811, P54812, P54814, P55072

SIGNOR signaling

1 interactions.

AEffectBMechanism
PSMC6“form complex”“26S Proteasome”binding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 113 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Proteasome assembly2257.5×1e-31
Regulation of activated PAK-2p34 by proteasome mediated degradation1657.1×5e-23
Vpu mediated degradation of CD41654.5×7e-23
Autodegradation of the E3 ubiquitin ligase COP11654.5×7e-23
Ubiquitin-dependent degradation of Cyclin D1654.5×7e-23
AUF1 (hnRNP D0) binds and destabilizes mRNA1754.1×8e-24
Regulation of ornithine decarboxylase (ODC)1552.3×1e-21
Cross-presentation of soluble exogenous antigens (endosomes)1652.1×1e-22

GO biological processes:

GO termPartnersFoldFDR
proteasome-mediated ubiquitin-dependent protein catabolic process2112.6×8e-15
ubiquitin-dependent protein catabolic process97.7×7e-04

Disease & clinical

Clinical variants and AI predictions

ClinVar

24 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance11
Likely benign1
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

1671 predictions. Top by Δscore:

VariantEffectΔscore
14:52707300:GGAGT:Gdonor_gain1.0000
14:52707301:GAGT:Gdonor_gain1.0000
14:52707301:GAGTG:Gdonor_gain1.0000
14:52707302:A:Tdonor_gain1.0000
14:52707303:GT:Gdonor_gain1.0000
14:52707305:G:GGdonor_gain1.0000
14:52707305:GTGA:Gdonor_loss1.0000
14:52707306:TGAG:Tdonor_loss1.0000
14:52707307:GAGTG:Gdonor_loss1.0000
14:52708307:A:AGacceptor_gain1.0000
14:52708308:G:GAacceptor_gain1.0000
14:52708308:GT:Gacceptor_gain1.0000
14:52708308:GTA:Gacceptor_gain1.0000
14:52708386:CAGG:Cdonor_loss1.0000
14:52708387:AG:Adonor_loss1.0000
14:52708389:G:Adonor_loss1.0000
14:52708390:T:Gdonor_loss1.0000
14:52708478:CTTA:Cacceptor_loss1.0000
14:52708479:TTAG:Tacceptor_loss1.0000
14:52708480:TAGAT:Tacceptor_loss1.0000
14:52708481:A:AGacceptor_gain1.0000
14:52708481:AGA:Aacceptor_loss1.0000
14:52708482:G:Aacceptor_loss1.0000
14:52708482:G:GGacceptor_gain1.0000
14:52708482:GATC:Gacceptor_gain1.0000
14:52708521:AT:Adonor_gain1.0000
14:52708523:G:GAdonor_loss1.0000
14:52708523:G:GGdonor_gain1.0000
14:52708524:T:Gdonor_loss1.0000
14:52708762:A:AGacceptor_gain1.0000

AlphaMissense

2554 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
14:52708383:G:AG54R1.000
14:52708383:G:CG54R1.000
14:52708383:G:TG54W1.000
14:52708384:G:AG54E1.000
14:52708384:G:TG54V1.000
14:52708489:G:CG58R1.000
14:52708490:G:AG58D1.000
14:52708770:T:AV71D1.000
14:52708784:G:AG76R1.000
14:52708784:G:CG76R1.000
14:52708785:G:AG76E1.000
14:52708797:T:AV80D1.000
14:52711135:T:AV98D1.000
14:52711138:C:AA99D1.000
14:52711141:T:GL100W1.000
14:52711156:T:CL105P1.000
14:52711439:T:AV119D1.000
14:52711490:G:AG136E1.000
14:52711492:G:AG137R1.000
14:52711492:G:CG137R1.000
14:52711493:G:AG137E1.000
14:52711496:T:CL138P1.000
14:52713885:T:AI149K1.000
14:52713897:T:CL153P1.000
14:52713914:T:CF159L1.000
14:52713915:T:CF159S1.000
14:52713916:T:AF159L1.000
14:52713916:T:GF159L1.000
14:52713927:G:TG163V1.000
14:52713930:T:AI164K1.000

dbSNP variants (sampled 300 via entrez): RS1000077396 (14:52710716 G>A), RS1000367724 (14:52717302 T>C), RS1000402885 (14:52725205 G>C), RS1000424289 (14:52724540 A>G), RS1000455248 (14:52724868 G>A), RS1000532591 (14:52713386 A>G), RS1000604726 (14:52713144 C>A), RS1000978458 (14:52727729 A>C,T), RS1001050942 (14:52712690 T>G), RS1001071002 (14:52706070 G>A,C,T), RS1001078675 (14:52712298 A>G), RS1001220542 (14:52707029 G>A,T), RS1001343293 (14:52719310 G>A,C), RS1001436994 (14:52706300 C>T), RS1001499010 (14:52720622 G>A,T)

Disease associations

OMIM: gene MIM:602708 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

1 associations (top):

StudyTraitp-value
GCST001942_15Prostate cancer2.000000e-14

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2364701 (PROTEIN COMPLEX), CHEMBL3831206 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 25,628 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL325041BORTEZOMIB413,120
CHEMBL451887CARFILZOMIB412,508

PharmGKB: 1 entry (VIP=true, CPIC=false)

ChEMBL bioactivities

64 potent at pChembl≥5 of 67 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
8.62IC502.4nMBORTEZOMIB
8.59IC502.56nMBORTEZOMIB
8.57IC502.7nMCHEMBL3237863
8.47IC503.4nMCHEMBL6143686
8.41IC503.9nMCHEMBL3237862
8.39IC504.1nMCHEMBL3237864
8.39IC504.1nMCHEMBL3237867
8.32IC504.8nMCHEMBL3237873
8.29IC505.1nMCHEMBL3237865
8.24IC505.7nMCHEMBL3237866
8.24IC505.7nMCHEMBL3237860
8.23IC505.9nMCHEMBL3237868
8.15IC507nMBORTEZOMIB
8.15IC507.1nMCHEMBL3237870
8.15IC507.14nMBORTEZOMIB
8.12IC507.5nMCHEMBL3237871
8.11IC507.7nMCHEMBL3237874
8.11IC507.8nMCHEMBL3237869
8.07IC508.6nMCARFILZOMIB
7.54IC5029nMCHEMBL3237861
7.34IC5046nMCHEMBL3237867
7.27IC5054nMCHEMBL3237872
7.12IC5075nMCHEMBL3237865
7.12IC5076nMCHEMBL3237866
6.96IC50110nMCHEMBL3262766
6.92IC50120nMCHEMBL3237864
6.92IC50120nMBORTEZOMIB
6.89IC50130nMCHEMBL3237869
6.85IC50140nMCHEMBL3237862
6.82IC50150nMCHEMBL3237863
6.79Kd164.1nMCHEMBL5653589
6.79ED50164.1nMCHEMBL5653589
6.77IC50170nMCHEMBL3237873
6.77IC50170nMCHEMBL3262765
6.72IC50190nMCHEMBL3262758
6.68IC50210nMCHEMBL3237870
6.66IC50220nMCHEMBL3262756
6.60IC50250nMCHEMBL3237868
6.47IC50340nMCHEMBL3262752
6.47IC50340nMCHEMBL3262755
6.44IC50360nMCHEMBL3262757
6.42IC50380nMCHEMBL3262754
6.36IC50440nMCHEMBL3262753
6.30IC50500nMCHEMBL3237872
6.20IC50630nMCHEMBL3262762
6.02IC50950nMCHEMBL3262761
6.00IC501000nMCHEMBL3237871
5.96IC501100nMCHEMBL3237862
5.85IC501400nMBELACTOSIN A
5.84IC501440nMBELACTOSIN A

PubChem BioAssay actives

61 with measured affinity, of 137 total; 33 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
Bortezomib1985684: Inhibition of 26S proteasome (unknown origin)ic500.0024uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0027uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0039uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0041uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0041uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-(4-phenylmethoxybutyl)butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0048uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0051uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0057uM
benzyl N-[(2S)-1-[[(2R)-1-[(1R,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]-4-phenylbutan-2-yl]amino]-1-oxopropan-2-yl]carbamate1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0057uM
(2S)-2-[(2,5-dichlorobenzoyl)amino]-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0059uM
(2S)-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]-2-(pyrazine-2-carbonylamino)butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0071uM
(2S)-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]-2-[(6-phenylpyridine-2-carbonyl)amino]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0075uM
[(1R)-1-[[(2S)-2-acetamido-4-oxo-4-[[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]amino]butanoyl]amino]-3-methylbutyl]boronic acid1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0077uM
(2S)-2-benzamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0078uM
Carfilzomib1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.0086uM
(2R,3S)-3-[(2S)-butan-2-yl]-4-oxo-N-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]oxetane-2-carboxamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0290uM
(2S)-2-acetamido-N’-methyl-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0540uM
N-[(1R)-3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]naphthalene-2-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.1100uM
4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149120: Binding affinity to human PSMC6 incubated for 45 mins by Kinobead based pull down assaykd0.1641uM
N-[(1R)-3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]-4-(trifluoromethyl)benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.1700uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]naphthalene-2-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.1900uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]-4-(trifluoromethyl)benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.2200uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]pyridine-3-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3400uM
4-methoxy-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3400uM
4-cyano-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3600uM
4-fluoro-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3800uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.4400uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]oxane-4-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.6300uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]thiophene-2-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.9500uM
(2S)-2-[[(2S)-2-aminopropanoyl]amino]-3-[(1S,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]propanoic acid1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic501.4000uM
(2S)-2-acetamido-N-[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1152964: Inhibition of chymotrypsin-like of human 20S proteasome using chromophoric Suc-LLVY-AMC as substrate after 60 mins by fluorescence assayic502.3000uM
N-[3-(2-oxo-1,3,4-oxathiazol-5-yl)phenyl]acetamide1137840: Inhibition of chymotrypsin-like activity of 26S proteasome in intact human Karpas 1106p cells assessed as substrate hydrolysis using Suc-LLVY-(D)-aminoluciferin as substrate after 3 hrs by cell-based Proteasome-Glo assayec504.2000uM
(2S)-2-acetamido-N-[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]-N’-(4-phenylmethoxybutyl)butanediamide1152964: Inhibition of chymotrypsin-like of human 20S proteasome using chromophoric Suc-LLVY-AMC as substrate after 60 mins by fluorescence assayic505.7000uM

CTD chemical–gene interactions

52 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteaffects binding, increases reaction, decreases expression, affects cotreatment, increases abundance (+1 more)4
Valproic Aciddecreases expression, decreases methylation, affects cotreatment, increases expression4
Air Pollutantsincreases oxidation, affects expression, decreases expression, affects cotreatment, increases abundance3
Arsenicincreases methylation, affects cotreatment, increases abundance, increases expression2
Ozoneaffects cotreatment, increases oxidation, increases abundance, affects expression2
bisphenol Fincreases expression1
dicrotophosdecreases expression1
triphenyl phosphateaffects expression1
alpha-pineneaffects cotreatment, increases oxidation, increases abundance1
bisphenol Adecreases expression1
nobiletindecreases expression, decreases reaction1
sodium arsenatedecreases expression, decreases reaction1
decabromobiphenyl etherdecreases expression1
kojic aciddecreases expression1
cobaltous chlorideincreases expression1
tetrabromobisphenol Adecreases expression1
manganese chlorideincreases abundance, increases expression, affects cotreatment1
methacrylaldehydeincreases oxidation, increases abundance, affects cotreatment1
benzyloxycarbonylleucyl-leucyl-leucine aldehydeincreases expression1
2-palmitoylglycerolincreases expression1
clothianidindecreases expression1
ICG 001decreases expression1
bisphenol Bincreases expression1
abrineincreases expression1
elesclomolincreases expression1
hexabrominated diphenyl ether 153decreases expression1
bisphenol Sincreases expression1
jinfukangdecreases expression1
Resveratrolaffects cotreatment, increases expression1
Temozolomideincreases expression1

ChEMBL screening assays

27 unique, capped per target: 27 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3222879BindingInhibition of human 20S proteasome using Suc-LLVY-AMC as substrate preincubated for 30 mins followed by substrate addition measured after 90 mins by fluorescence assayOxathiazole-2-one derivative of bortezomib: Synthesis, stability and proteasome inhibition activity — Medchemcomm

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.