PSMD5
gene geneOn this page
Also known as S5BKIAA0072
Summary
PSMD5 (proteasome 26S subunit, non-ATPase 5, HGNC:9563) is a protein-coding gene on chromosome 9q33.2, encoding 26S proteasome non-ATPase regulatory subunit 5 (Q16401). Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC).
The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. This gene encodes a non-ATPase subunit of the 19S regulator base that functions as a chaperone protein during 26S proteasome assembly.
Source: NCBI Gene 5711 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 75 total
- Druggable target: yes
- MANE Select transcript:
NM_005047
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9563 |
| Approved symbol | PSMD5 |
| Name | proteasome 26S subunit, non-ATPase 5 |
| Location | 9q33.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | S5B, KIAA0072 |
| Ensembl gene | ENSG00000095261 |
| Ensembl biotype | protein_coding |
| OMIM | 604452 |
| Entrez | 5711 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 6 protein_coding, 3 retained_intron, 1 nonsense_mediated_decay
ENST00000210313, ENST00000373903, ENST00000373904, ENST00000373920, ENST00000471789, ENST00000476949, ENST00000496688, ENST00000625444, ENST00000899083, ENST00000963400
RefSeq mRNA: 2 — MANE Select: NM_005047
NM_001270427, NM_005047
CCDS: CCDS59143, CCDS6824
Canonical transcript exons
ENST00000210313 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001656052 | 120829099 | 120829208 |
| ENSE00001664782 | 120826765 | 120826907 |
| ENSE00001680614 | 120821355 | 120821464 |
| ENSE00001714724 | 120820839 | 120820979 |
| ENSE00001724122 | 120824494 | 120824685 |
| ENSE00001749259 | 120831331 | 120831459 |
| ENSE00001853489 | 120816053 | 120818163 |
| ENSE00001896328 | 120842737 | 120842922 |
| ENSE00003466325 | 120833312 | 120833456 |
| ENSE00003648374 | 120831832 | 120831945 |
Expression profiles
Bgee: expression breadth ubiquitous, 291 present calls, max score 94.26.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.0077 / max 165.8884, expressed in 1780 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 102304 | 11.0077 | 1780 |
Top tissues by expression
298 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| hair follicle | UBERON:0002073 | 94.26 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 92.39 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 91.84 | gold quality |
| tibia | UBERON:0000979 | 91.72 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 91.51 | gold quality |
| squamous epithelium | UBERON:0006914 | 90.30 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 89.44 | gold quality |
| mammary duct | UBERON:0001765 | 89.07 | gold quality |
| islet of Langerhans | UBERON:0000006 | 89.03 | gold quality |
| calcaneal tendon | UBERON:0003701 | 89.03 | gold quality |
| oviduct epithelium | UBERON:0004804 | 89.03 | gold quality |
| secondary oocyte | CL:0000655 | 88.95 | gold quality |
| periodontal ligament | UBERON:0008266 | 88.91 | gold quality |
| lower lobe of lung | UBERON:0008949 | 88.89 | gold quality |
| gingiva | UBERON:0001828 | 88.77 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 88.57 | gold quality |
| mammary gland | UBERON:0001911 | 88.54 | gold quality |
| upper arm skin | UBERON:0004263 | 88.54 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.51 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 88.47 | gold quality |
| left adrenal gland | UBERON:0001234 | 88.37 | gold quality |
| gingival epithelium | UBERON:0001949 | 88.35 | gold quality |
| endometrium | UBERON:0001295 | 88.33 | gold quality |
| cauda epididymis | UBERON:0004360 | 88.33 | gold quality |
| adrenal gland | UBERON:0002369 | 88.29 | gold quality |
| upper leg skin | UBERON:0004262 | 88.18 | gold quality |
| parietal pleura | UBERON:0002400 | 88.17 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 88.16 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 88.16 | gold quality |
| decidua | UBERON:0002450 | 87.93 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.72 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
85 targeting PSMD5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
Literature-anchored findings (GeneRIF, showing 2)
- the critical role of S5b/PSMD5 in negative regulation of proteasome by TNF-alpha/NFkappaB and provide insights into proteasome inhibition in human disease. (PMID:22921402)
- Study in HT-29 cells and mouse colorectal tumor models revealed that levels of the proteasome assembly inhibitor PSMD5/S5B are significantly decreased in tumors, and re-expression of PSMD5 blocks 26S proteasome assembly. These results suggest that intestinal cancer cells escape proteotoxic stress by reducing PSMD5 to stimulate 26S proteasome assembly. (PMID:29716915)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | psmd5 | ENSDARG00000059046 |
| mus_musculus | Psmd5 | ENSMUSG00000026869 |
| rattus_norvegicus | Psmd5 | ENSRNOG00000018809 |
| drosophila_melanogaster | CG12096 | FBGN0030457 |
| caenorhabditis_elegans | WBGENE00009445 |
Protein
Protein identifiers
26S proteasome non-ATPase regulatory subunit 5 — Q16401 (reviewed: Q16401)
Alternative names: 26S protease subunit S5 basic, 26S proteasome subunit S5B
All UniProt accessions (3): Q16401, F2Z3J2, Q4VXH0
UniProt curated annotations — full annotation on UniProt →
Function. Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). In the initial step of the base subcomplex assembly is part of an intermediate PSMD5:PSMC2:PSMC1:PSMD2 module which probably assembles with a PSMD10:PSMC4:PSMC5:PAAF1 module followed by dissociation of PSMD5.
Subunit / interactions. Interacts with PSMC1, PSMC2, PSMD1 and PSMD6. Part of transient complex containing PSMD5, PSMC2, PSMC1 and PSMD2 formed during the assembly of the 26S proteasome.
Domain organisation. Rich in dileucine repeats, which have been implicated in trafficking of a variety of transmembrane proteins.
Similarity. Belongs to the proteasome subunit S5B/HSM3 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q16401-1 | 1 | yes |
| Q16401-2 | 2 |
RefSeq proteins (2): NP_001257356, NP_005038* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR019538 | PSMD5 | Family |
Pfam: PF10508
UniProt features (6 total): sequence variant 2, initiator methionine 1, chain 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q16401-F1 | 93.96 | 0.89 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 2
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9907900 | Proteasome assembly |
MSigDB gene sets: 114 (showing top):
GOBP_PROTEASOME_ASSEMBLY, LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN, WANG_LMO4_TARGETS_DN, DOUGLAS_BMI1_TARGETS_DN, DANG_BOUND_BY_MYC, GOCC_PROTEASOME_REGULATORY_PARTICLE_BASE_SUBCOMPLEX, MARSON_BOUND_BY_FOXP3_STIMULATED, BENPORATH_MYC_MAX_TARGETS, GOCC_PROTEASOME_ACCESSORY_COMPLEX, SWEET_LUNG_CANCER_KRAS_UP, CHENG_RESPONSE_TO_NICKEL_ACETATE, REACTOME_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, LINDGREN_BLADDER_CANCER_CLUSTER_1_UP, LEE_BMP2_TARGETS_DN, GOCC_PEPTIDASE_COMPLEX
GO Biological Process (2): proteasome regulatory particle assembly (GO:0070682), proteasome assembly (GO:0043248)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (4): proteasome complex (GO:0000502), cytosol (GO:0005829), proteasome accessory complex (GO:0022624), proteasome regulatory particle, base subcomplex (GO:0008540)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein-containing complex | 2 |
| proteasome assembly | 1 |
| protein-containing complex assembly | 1 |
| binding | 1 |
| intracellular protein-containing complex | 1 |
| endopeptidase complex | 1 |
| cytoplasm | 1 |
| cellular anatomical structure | 1 |
| proteasome complex | 1 |
| intracellular anatomical structure | 1 |
| proteasome regulatory particle | 1 |
Protein interactions and networks
STRING
1260 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PSMD5 | PSMD4 | P55036 | 976 |
| PSMD5 | PSMC1 | P49014 | 816 |
| PSMD5 | PSMD2 | Q13200 | 793 |
| PSMD5 | PSMD7 | P51665 | 779 |
| PSMD5 | PSMD11 | O00231 | 770 |
| PSMD5 | LONP1 | P36776 | 747 |
| PSMD5 | ADRM1 | Q16186 | 746 |
| PSMD5 | PSMD1 | Q99460 | 702 |
| PSMD5 | PSMC6 | P49719 | 684 |
| PSMD5 | PSMD9 | O00233 | 679 |
| PSMD5 | PSMD8 | P48556 | 671 |
| PSMD5 | PSMD6 | Q15008 | 665 |
| PSMD5 | PSMC4 | P43686 | 626 |
| PSMD5 | UCHL5 | Q9Y5K5 | 625 |
| PSMD5 | PSMC3 | P17980 | 605 |
IntAct
112 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PSMD5 | PSMC2 | psi-mi:“MI:0915”(physical association) | 0.960 |
| PSMC2 | PSMD5 | psi-mi:“MI:0915”(physical association) | 0.960 |
| PSMD5 | PSMC2 | psi-mi:“MI:0914”(association) | 0.960 |
| PSMD5 | PSMC2 | psi-mi:“MI:0407”(direct interaction) | 0.960 |
| PSMC1 | PSMD5 | psi-mi:“MI:0915”(physical association) | 0.940 |
| PSMD5 | PSMC1 | psi-mi:“MI:0915”(physical association) | 0.940 |
| PSMC3 | PSMD9 | psi-mi:“MI:0914”(association) | 0.940 |
| KIFAP3 | KIF3B | psi-mi:“MI:0914”(association) | 0.900 |
| PSMC1 | PSMC2 | psi-mi:“MI:0914”(association) | 0.890 |
| UCHL5 | PSMD12 | psi-mi:“MI:0914”(association) | 0.840 |
| PSMD10 | PSMD11 | psi-mi:“MI:0914”(association) | 0.800 |
| PSMD13 | PSMD11 | psi-mi:“MI:0914”(association) | 0.750 |
| PSMD4 | PSMD11 | psi-mi:“MI:0914”(association) | 0.750 |
| PSMD7 | PSMD11 | psi-mi:“MI:0914”(association) | 0.730 |
| PSMC5 | PSMD11 | psi-mi:“MI:0914”(association) | 0.730 |
BioGRID (269): PSMD5 (Two-hybrid), PSMD5 (Two-hybrid), TFCP2 (Two-hybrid), PSMD5 (Two-hybrid), BAG1 (Co-fractionation), DIS3L2 (Co-fractionation), GCSH (Co-fractionation), LAMB1 (Co-fractionation), MCM3 (Co-fractionation), P4HA1 (Co-fractionation), PAAF1 (Co-fractionation), PFKL (Co-fractionation), PFKM (Co-fractionation), PSMA3 (Co-fractionation), PSMA4 (Co-fractionation)
ESM2 similar proteins: A0JMW2, A2VE70, A5WW24, A7E2Y6, B9EJR8, E0CZ22, E1BP36, E7FBU4, O35638, O43156, O70576, O75155, Q08AM6, Q0P5A6, Q0V9L1, Q16401, Q5IFJ8, Q5JTH9, Q5R6L5, Q5ZIW5, Q5ZKD5, Q66L58, Q68F38, Q6DCF2, Q6P5B0, Q6ZQ73, Q7TMY7, Q80W92, Q80WQ2, Q84ZC0, Q86Y56, Q8C0Y0, Q8K2V6, Q8NDA8, Q8WVM7, Q91V83, Q96T76, Q99M76, Q9BPX3, Q9D071
Diamond homologs: Q0P5A6, Q16401, Q5IFJ8, Q8BJY1
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 86 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Autodegradation of the E3 ubiquitin ligase COP1 | 14 | 65.2× | 1e-20 |
| Regulation of activated PAK-2p34 by proteasome mediated degradation | 13 | 63.5× | 6e-19 |
| Regulation of ornithine decarboxylase (ODC) | 13 | 62.0× | 6e-19 |
| Vpu mediated degradation of CD4 | 13 | 60.6× | 6e-19 |
| Ubiquitin-dependent degradation of Cyclin D | 13 | 60.6× | 6e-19 |
| Cross-presentation of soluble exogenous antigens (endosomes) | 13 | 57.9× | 8e-19 |
| Vif-mediated degradation of APOBEC3G | 13 | 57.9× | 8e-19 |
| Proteasome assembly | 16 | 57.2× | 2e-22 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| proteasome-mediated ubiquitin-dependent protein catabolic process | 16 | 11.8× | 2e-10 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
75 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 59 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1241 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:120820976:CAGG:C | acceptor_gain | 1.0000 |
| 9:120820978:GG:G | acceptor_gain | 1.0000 |
| 9:120820978:GGCTA:G | acceptor_loss | 1.0000 |
| 9:120820979:GCTA:G | acceptor_loss | 1.0000 |
| 9:120820980:C:CC | acceptor_gain | 1.0000 |
| 9:120820980:C:CG | acceptor_loss | 1.0000 |
| 9:120829205:TTAG:T | acceptor_gain | 1.0000 |
| 9:120831461:T:C | acceptor_gain | 1.0000 |
| 9:120831831:CCG:C | donor_gain | 1.0000 |
| 9:120820834:CCT:C | donor_loss | 0.9900 |
| 9:120820835:CT:C | donor_loss | 0.9900 |
| 9:120820836:TA:T | donor_loss | 0.9900 |
| 9:120820838:C:CT | donor_loss | 0.9900 |
| 9:120820975:TCAGG:T | acceptor_gain | 0.9900 |
| 9:120820976:CAGGC:C | acceptor_gain | 0.9900 |
| 9:120820977:AGG:A | acceptor_gain | 0.9900 |
| 9:120820983:C:CT | acceptor_gain | 0.9900 |
| 9:120820984:A:T | acceptor_gain | 0.9900 |
| 9:120826908:C:CC | acceptor_gain | 0.9900 |
| 9:120829111:T:TA | donor_gain | 0.9900 |
| 9:120829204:ATTAG:A | acceptor_gain | 0.9900 |
| 9:120829206:TAG:T | acceptor_gain | 0.9900 |
| 9:120829208:GC:G | acceptor_loss | 0.9900 |
| 9:120829209:C:A | acceptor_loss | 0.9900 |
| 9:120829209:C:CC | acceptor_gain | 0.9900 |
| 9:120829214:A:AC | acceptor_gain | 0.9900 |
| 9:120831324:ATCTT:A | donor_loss | 0.9900 |
| 9:120831325:TCTTA:T | donor_loss | 0.9900 |
| 9:120831326:CTTAC:C | donor_loss | 0.9900 |
| 9:120831327:TTACC:T | donor_loss | 0.9900 |
AlphaMissense
3256 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:120817959:C:G | G488R | 0.996 |
| 9:120817959:C:T | G488R | 0.996 |
| 9:120818145:A:G | W426R | 0.996 |
| 9:120818145:A:T | W426R | 0.996 |
| 9:120817958:C:T | G488E | 0.995 |
| 9:120817959:C:A | G488W | 0.995 |
| 9:120817979:A:G | L481P | 0.995 |
| 9:120818033:A:G | L463P | 0.993 |
| 9:120818045:A:G | L459P | 0.993 |
| 9:120820937:A:G | W387R | 0.993 |
| 9:120820937:A:T | W387R | 0.993 |
| 9:120824518:C:G | G328R | 0.993 |
| 9:120824518:C:T | G328R | 0.993 |
| 9:120829207:A:G | L188P | 0.993 |
| 9:120824532:C:T | G323E | 0.992 |
| 9:120824533:C:G | G323R | 0.992 |
| 9:120824533:C:T | G323R | 0.992 |
| 9:120824556:G:T | A315D | 0.992 |
| 9:120824661:A:G | L280P | 0.992 |
| 9:120818053:T:A | K456N | 0.991 |
| 9:120818053:T:G | K456N | 0.991 |
| 9:120826848:A:G | L244P | 0.991 |
| 9:120831347:C:G | R182P | 0.991 |
| 9:120831459:C:G | A145P | 0.989 |
| 9:120817958:C:A | G488V | 0.988 |
| 9:120818143:C:A | W426C | 0.988 |
| 9:120818143:C:G | W426C | 0.988 |
| 9:120824547:G:T | T318K | 0.988 |
| 9:120818156:G:T | A422E | 0.987 |
| 9:120829112:C:G | D220H | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000017057 (9:120826175 T>A), RS1000269805 (9:120818127 AC>A), RS1000390465 (9:120843569 G>A,C,T), RS1000419449 (9:120837451 C>T), RS1000534873 (9:120833104 T>A), RS1000591856 (9:120830030 G>A), RS1000731406 (9:120837496 C>A,T), RS1000787020 (9:120838950 A>T), RS1000825402 (9:120816503 G>A), RS1000996779 (9:120824303 C>A,T), RS1001054704 (9:120832343 G>C), RS1001075924 (9:120824119 A>AG), RS1001098222 (9:120825256 A>T), RS1001276257 (9:120817705 T>G), RS1001429870 (9:120826830 A>G)
Disease associations
OMIM: gene MIM:604452 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006259_41 | Systolic blood pressure | 6.000000e-10 |
| GCST90020028_393 | Hip circumference adjusted for BMI | 6.000000e-09 |
| GCST90020028_394 | Hip circumference adjusted for BMI | 2.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006335 | systolic blood pressure |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067067 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.31 | Kd | 0.486 | nM | CHEMBL5653589 |
| 9.31 | ED50 | 0.486 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149128: Binding affinity to human PSMD5 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0005 | uM |
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, affects expression | 3 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| 1-nitropyrene | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| nickel acetate | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| LDN 193189 | decreases expression, affects cotreatment | 1 |
| bisphenol AF | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Dactinomycin | affects cotreatment, increases secretion | 1 |
| Dinitrochlorobenzene | affects binding | 1 |
| Doxorubicin | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Ketoconazole | increases expression | 1 |
| Lead | affects expression | 1 |
| Quercetin | decreases expression | 1 |
| Testosterone | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | affects expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652170 | Binding | Binding affinity to human PSMD5 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2CH | Abcam HeLa PSMD5 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.