PSMD7-DT

Summary

PSMD7-DT (PSMD7 divergent transcript, HGNC:53056) is a long non-coding RNA gene on chromosome 16q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53056
Approved symbol	PSMD7-DT
Name	PSMD7 divergent transcript
Location	16q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261404
Ensembl biotype	lncRNA
Entrez	101928035
RNAcentral	URS000075AED8 — lncRNA, 987 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 34 — 34 lncRNA

ENST00000562888, ENST00000568137, ENST00000569389, ENST00000641127, ENST00000641248, ENST00000641277, ENST00000641560, ENST00000641872, ENST00000641894, ENST00000650425, ENST00000722775, ENST00000722776, ENST00000722777, ENST00000722778, ENST00000722779, ENST00000722780, ENST00000722781, ENST00000722782, ENST00000722783, ENST00000722784, ENST00000722785, ENST00000722786, ENST00000722787, ENST00000722788, ENST00000722789, ENST00000722790, ENST00000722791, ENST00000722792, ENST00000722793, ENST00000722794, ENST00000722795, ENST00000722796, ENST00000722797, ENST00000722798

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562888 — 3 exons

Exon	Start	End
ENSE00002576945	74205905	74206165
ENSE00004043750	74296415	74296765
ENSE00004043772	74103082	74103352

Expression profiles

Bgee: expression breadth ubiquitous, 156 present calls, max score 83.46.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5412 / max 40.5976, expressed in 291 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
158104	0.5412	291

Top tissues by expression

251 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.46	gold quality
sperm	CL:0000019	79.56	gold quality
right testis	UBERON:0004534	75.98	gold quality
left testis	UBERON:0004533	75.83	gold quality
testis	UBERON:0000473	73.74	gold quality
pancreatic ductal cell	CL:0002079	72.55	silver quality
sural nerve	UBERON:0015488	72.11	gold quality
adrenal tissue	UBERON:0018303	71.25	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.58	silver quality
bone marrow cell	CL:0002092	66.47	silver quality
right adrenal gland cortex	UBERON:0035827	62.83	gold quality
cortical plate	UBERON:0005343	62.75	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.86	gold quality
ventricular zone	UBERON:0003053	60.71	gold quality
right adrenal gland	UBERON:0001233	60.70	gold quality
left adrenal gland	UBERON:0001234	60.47	gold quality
adrenal gland	UBERON:0002369	60.45	gold quality
right uterine tube	UBERON:0001302	60.35	gold quality
calcaneal tendon	UBERON:0003701	60.13	gold quality
left adrenal gland cortex	UBERON:0035825	59.56	gold quality
tibialis anterior	UBERON:0001385	59.39	silver quality
corpus callosum	UBERON:0002336	59.07	gold quality
adrenal cortex	UBERON:0001235	58.84	gold quality
leukocyte	CL:0000738	58.00	gold quality
monocyte	CL:0000576	57.88	gold quality
ileal mucosa	UBERON:0000331	57.43	silver quality
ganglionic eminence	UBERON:0004023	57.30	gold quality
muscle of leg	UBERON:0001383	56.23	gold quality
epithelial cell of pancreas	CL:0000083	56.17	gold quality
prefrontal cortex	UBERON:0000451	55.76	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.