PSMD7

gene
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Also known as S12P40MOV34Rpn8

Summary

PSMD7 (proteasome 26S subunit, non-ATPase 7, HGNC:9565) is a protein-coding gene on chromosome 16q23.1, encoding 26S proteasome non-ATPase regulatory subunit 7 (P51665). Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. It is a common-essential gene (DepMap: required in 99.8% of cancer cell lines).

The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a non-ATPase subunit of the 19S regulator. A pseudogene has been identified on chromosome 17.

Source: NCBI Gene 5713 — RefSeq curated summary.

At a glance

  • GWAS associations: 3
  • Clinical variants (ClinVar): 46 total
  • Druggable target: yes — 2 molecules with ChEMBL bioactivity
  • Cancer dependency (DepMap): dependent in 99.8% of screened cell lines (common-essential)
  • MANE Select transcript: NM_002811

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9565
Approved symbolPSMD7
Nameproteasome 26S subunit, non-ATPase 7
Location16q23.1
Locus typegene with protein product
StatusApproved
AliasesS12, P40, MOV34, Rpn8
Ensembl geneENSG00000103035
Ensembl biotypeprotein_coding
OMIM157970
Entrez5713

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 5 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay

ENST00000219313, ENST00000563150, ENST00000566015, ENST00000567958, ENST00000568615, ENST00000568717, ENST00000937729, ENST00000937730

RefSeq mRNA: 1 — MANE Select: NM_002811 NM_002811

CCDS: CCDS10910

Canonical transcript exons

ENST00000219313 — 7 exons

ExonStartEnd
ENSE000008748447429681474296988
ENSE000008748457430528974306288
ENSE000034752287430430374304394
ENSE000035361147430105274301144
ENSE000036073417430221274302292
ENSE000036444247430155574301652
ENSE000036709437430011574300206

Expression profiles

Bgee: expression breadth ubiquitous, 297 present calls, max score 98.50.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 94.7336 / max 642.6341, expressed in 1827 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
15500391.29291827
1550043.44071562

Top tissues by expression

301 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
gastrocnemiusUBERON:000138898.50gold quality
muscle of legUBERON:000138398.37gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451198.14gold quality
muscle organUBERON:000163098.04gold quality
skeletal muscle organUBERON:001489298.04gold quality
hindlimb stylopod muscleUBERON:000425297.66gold quality
skin of legUBERON:000151197.42gold quality
heart left ventricleUBERON:000208497.39gold quality
skin of abdomenUBERON:000141697.34gold quality
skeletal muscle tissueUBERON:000113497.27gold quality
deltoidUBERON:000147697.26gold quality
gluteal muscleUBERON:000200097.26gold quality
cardiac ventricleUBERON:000208297.23gold quality
vastus lateralisUBERON:000137997.20gold quality
monocyteCL:000057697.19gold quality
quadriceps femorisUBERON:000137797.17gold quality
right atrium auricular regionUBERON:000663197.17gold quality
rectumUBERON:000105297.10gold quality
tibial arteryUBERON:000761097.05gold quality
right adrenal gland cortexUBERON:003582797.05gold quality
popliteal arteryUBERON:000225097.04gold quality
muscle layer of sigmoid colonUBERON:003580597.04gold quality
islet of LangerhansUBERON:000000697.02gold quality
left adrenal glandUBERON:000123497.02gold quality
right adrenal glandUBERON:000123397.01gold quality
adrenal tissueUBERON:001830397.00gold quality
lower esophagus muscularis layerUBERON:003583396.92gold quality
lower esophagusUBERON:001347396.91gold quality
mononuclear cellCL:000084296.90gold quality
stromal cell of endometriumCL:000225596.89gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-MTAB-6701yes37.82
E-MTAB-6911no492.86
E-ANND-3no0.00

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

44 targeting PSMD7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-29A-3P100.0073.111835
HSA-MIR-29B-3P100.0073.181833
HSA-MIR-29C-3P100.0073.151833
HSA-MIR-3646100.0073.565283
HSA-MIR-477599.9875.006394
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-448799.9664.581252
HSA-MIR-338-5P99.9272.342951
HSA-MIR-497-5P99.9271.832674
HSA-MIR-15A-5P99.9072.802787
HSA-MIR-15B-5P99.9072.782798
HSA-MIR-16-5P99.9072.802780
HSA-MIR-195-5P99.9072.812805
HSA-MIR-424-5P99.8971.902641
HSA-MIR-6838-5P99.8971.942690
HSA-MIR-576-5P99.8470.462582
HSA-MIR-6515-3P99.8268.191933
HSA-MIR-807699.7868.521170
HSA-MIR-548AG99.7769.251492
HSA-MIR-548AI99.6969.241494
HSA-MIR-548BA99.6969.141514
HSA-MIR-570-5P99.6969.241494
HSA-MIR-130399.6569.771662
HSA-MIR-6513-3P99.5969.771102

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 99.8% of screened cell lines, common-essential.

Literature-anchored findings (GeneRIF, showing 8)

  • hVIP is a member of the complex array of nucleocytoplasmic shuttling proteins that are regulated by HIV infection and glucocorticoids (PMID:12237292)
  • data suggest a differential nuclear function of modified and unmodified S12 in cancer (PMID:15221960)
  • MPN domain of Mov34 is highly resistant to proteolysis (PMID:16842755)
  • although the MPN domain of Mov34 shows a typical metalloprotease fold, it is unable to coordinate a metal ion. (PMID:17559875)
  • SNP rs17336700 of a non-MHC ubiquitin-proteasome subunit PSMD7 is significantly associated with ankylosing spondylitis in Chinese population and the mRNA level of the PSMD7 gene in liver tissue increased when the rs17336700 C allele was present. (PMID:20643764)
  • Deubiquitinase PSMD7 promotes the proliferation, invasion, and cisplatin resistance of gastric cancer cells by stabilizing RAD23B. (PMID:34512150)
  • Transcriptional activation of Proteasome 26S non-ATPase subunit 7 by forkhead box P3 participates in gastric cancer cell proliferation and apoptosis. (PMID:35037550)
  • Deubiquitinating enzyme PSMD7 promotes bladder cancer development: Involvement of RAB1A stabilization. (PMID:38040402)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriopsmd7ENSDARG00000102417
mus_musculusPsmd7ENSMUSG00000039067
rattus_norvegicusPsmd7ENSRNOG00000014097
drosophila_melanogasterRpn8FBGN0002787
caenorhabditis_elegansrpn-8WBGENE00004464

Paralogs (2): COPS6 (ENSG00000168090), EIF3F (ENSG00000175390)

Protein

Protein identifiers

26S proteasome non-ATPase regulatory subunit 7P51665 (reviewed: P51665)

Alternative names: 26S proteasome regulatory subunit RPN8, 26S proteasome regulatory subunit S12, Mov34 protein homolog, Proteasome subunit p40

All UniProt accessions (4): P51665, H3BNT7, H3BQV2, H3BTM8

UniProt curated annotations — full annotation on UniProt →

Function. Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair.

Subunit / interactions. Component of the 19S proteasome regulatory particle complex. The 26S proteasome consists of a 20S core particle (CP) and two 19S regulatory subunits (RP). The regulatory particle is made of a lid composed of 9 subunits including PSMD7, a base containing 6 ATPases and few additional components. Within the complex, PSMD7 interacts with subunit PSMD4 through their respective MPN domain. Interacts with TRIM5.

Miscellaneous. Does not bind a metal ion.

Similarity. Belongs to the peptidase M67A family.

RefSeq proteins (1): NP_002802* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000555JAMM/MPN+_domDomain
IPR024969EIF3F/CSN6-like_CDomain
IPR033858MPN_RPN7_8Family
IPR037518MPNDomain

Pfam: PF01398, PF13012

UniProt features (33 total): strand 12, helix 7, modified residue 4, sequence conflict 3, turn 3, chain 1, domain 1, region of interest 1, cross-link 1

Structure

Experimental structures (PDB)

120 structures, top 30 by resolution.

PDBMethodResolution (Å)
2O95X-RAY DIFFRACTION1.95
9K53ELECTRON MICROSCOPY2.5
8USBELECTRON MICROSCOPY2.73
9MBPELECTRON MICROSCOPY2.75
9NKGELECTRON MICROSCOPY2.8
9E8IELECTRON MICROSCOPY2.87
9BV3ELECTRON MICROSCOPY2.9
9E8HELECTRON MICROSCOPY2.9
9K4JELECTRON MICROSCOPY2.9
9NKFELECTRON MICROSCOPY2.9
9U3LELECTRON MICROSCOPY2.91
9NKIELECTRON MICROSCOPY2.94
2O96X-RAY DIFFRACTION3
6MSBELECTRON MICROSCOPY3
7W37ELECTRON MICROSCOPY3
8CVTELECTRON MICROSCOPY3
9E8GELECTRON MICROSCOPY3.01
9MBQELECTRON MICROSCOPY3.08
7W38ELECTRON MICROSCOPY3.1
8USCELECTRON MICROSCOPY3.1
9BV1ELECTRON MICROSCOPY3.1
9E8OELECTRON MICROSCOPY3.1
9K4RELECTRON MICROSCOPY3.1
9E8QELECTRON MICROSCOPY3.16
6MSDELECTRON MICROSCOPY3.2
6MSKELECTRON MICROSCOPY3.2
7W39ELECTRON MICROSCOPY3.2
7W3GELECTRON MICROSCOPY3.2
7W3HELECTRON MICROSCOPY3.2
9K4MELECTRON MICROSCOPY3.2

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P51665-F183.100.30

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (5): 204, 214, 316, 317, 180

Function

Pathways and Gene Ontology

Reactome pathways

68 pathways

IDPathway
R-HSA-1169091Activation of NF-kappaB in B cells
R-HSA-1234176Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
R-HSA-1236974ER-Phagosome pathway
R-HSA-1236978Cross-presentation of soluble exogenous antigens (endosomes)
R-HSA-174084Autodegradation of Cdh1 by Cdh1:APC/C
R-HSA-174113SCF-beta-TrCP mediated degradation of Emi1
R-HSA-174154APC/C:Cdc20 mediated degradation of Securin
R-HSA-174178APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-174184Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-HSA-180534Vpu mediated degradation of CD4
R-HSA-180585Vif-mediated degradation of APOBEC3G
R-HSA-187577SCF(Skp2)-mediated degradation of p27/p21
R-HSA-195253Degradation of beta-catenin by the destruction complex
R-HSA-202424Downstream TCR signaling
R-HSA-211733Regulation of activated PAK-2p34 by proteasome mediated degradation
R-HSA-2467813Separation of Sister Chromatids
R-HSA-2871837FCERI mediated NF-kB activation
R-HSA-349425Autodegradation of the E3 ubiquitin ligase COP1
R-HSA-350562Regulation of ornithine decarboxylase (ODC)
R-HSA-382556ABC-family protein mediated transport
R-HSA-450408AUF1 (hnRNP D0) binds and destabilizes mRNA
R-HSA-4608870Asymmetric localization of PCP proteins
R-HSA-4641257Degradation of AXIN
R-HSA-4641258Degradation of DVL
R-HSA-5358346Hedgehog ligand biogenesis
R-HSA-5362768Hh mutants are degraded by ERAD
R-HSA-5607761Dectin-1 mediated noncanonical NF-kB signaling
R-HSA-5607764CLEC7A (Dectin-1) signaling
R-HSA-5610780Degradation of GLI1 by the proteasome
R-HSA-5610783Degradation of GLI2 by the proteasome

MSigDB gene sets: 360 (showing top): MORF_MTA1, REACTOME_DNA_REPLICATION, REACTOME_SIGNALING_BY_NOTCH, AP1_01, REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1, REACTOME_INNATE_IMMUNE_SYSTEM, MORF_MBD4, YAGI_AML_WITH_INV_16_TRANSLOCATION, MORF_RAB5A, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_RESPONSE_TO_PEPTIDE, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, KEGG_PROTEASOME

GO Biological Process (1): proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)

GO Molecular Function (4): protein homodimerization activity (GO:0042803), protein binding (GO:0005515), peptidase activity (GO:0008233), metallopeptidase activity (GO:0008237)

GO Cellular Component (10): proteasome complex (GO:0000502), extracellular region (GO:0005576), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), proteasome regulatory particle (GO:0005838), membrane (GO:0016020), secretory granule lumen (GO:0034774), extracellular exosome (GO:0070062), ficolin-1-rich granule lumen (GO:1904813)

Reactome top-level categories

Rollup of top-18 pathways:

CategoryPathways
Antigen processing-Cross presentation2
APC/C-mediated degradation of cell cycle proteins2
Host Interactions of HIV factors2
Downstream signaling events of B Cell Receptor (BCR)1
Cellular response to hypoxia1
Regulation of APC/C activators between G1/S and early anaphase1
APC/C:Cdc20 mediated degradation of mitotic proteins1
APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint1
Cyclin E associated events during G1/S transition1
Cyclin A:Cdk2-associated events at S phase entry1
Signaling by WNT1
TCR signaling1
Regulation of Apoptosis1
Mitotic Anaphase1
Fc epsilon receptor (FCERI) signaling1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
ubiquitin-dependent protein catabolic process1
proteasomal protein catabolic process1
identical protein binding1
protein dimerization activity1
binding1
hydrolase activity1
catalytic activity, acting on a protein1
peptidase activity1
intracellular protein-containing complex1
endopeptidase complex1
intracellular membrane-bounded organelle1
nuclear lumen1
cytoplasm1
proteasome accessory complex1
protein-containing complex1
secretory granule1
cytoplasmic vesicle lumen1
extracellular vesicle1
intracellular organelle lumen1
ficolin-1-rich granule1

Protein interactions and networks

STRING

3730 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
PSMD7PSMD14O00487999
PSMD7PSMD12O00232997
PSMD7PSMD11O00231996
PSMD7PSMD3O43242996
PSMD7PSMD13Q9UNM6996
PSMD7PSMD6Q15008995
PSMD7PSMD8P48556994
PSMD7EIF3DO15371915
PSMD7COPS5Q92905911
PSMD7PSMD2Q13200906
PSMD7PSMD4P55036904
PSMD7EIF3HO15372901
PSMD7PSMD1Q99460897
PSMD7PSMC4P43686881
PSMD7PSMC1P49014879

IntAct

213 interactions, top by confidence:

ABTypeScore
PSMC6PSMC3psi-mi:“MI:0915”(physical association)0.950
PSMD14PSMD7psi-mi:“MI:0915”(physical association)0.900
MED4MED19psi-mi:“MI:2364”(proximity)0.900
STK24STRNpsi-mi:“MI:0914”(association)0.870
UCHL5PSMD11psi-mi:“MI:0914”(association)0.840
PSMD10PSMD11psi-mi:“MI:0914”(association)0.800
MED23MED19psi-mi:“MI:2364”(proximity)0.770
PSMD7PSMD11psi-mi:“MI:0914”(association)0.730
PSMC5PSMD11psi-mi:“MI:0914”(association)0.730
PSMD11PSMD12psi-mi:“MI:0915”(physical association)0.730
PSMB2PSMD11psi-mi:“MI:0914”(association)0.730
PSMD2PSMD11psi-mi:“MI:0914”(association)0.730
CFTRESYT2psi-mi:“MI:0914”(association)0.710
HTTPSMD7psi-mi:“MI:0915”(physical association)0.670

BioGRID (610): PSMD7 (Affinity Capture-MS), PSMD14 (Two-hybrid), PSMD7 (Affinity Capture-MS), PSMD7 (Affinity Capture-MS), PSMD7 (Affinity Capture-MS), PSMD1 (Affinity Capture-MS), PSMD13 (Affinity Capture-MS), VPS53 (Affinity Capture-MS), KTN1 (Affinity Capture-MS), RNF20 (Affinity Capture-MS), USP15 (Affinity Capture-MS), PSMD3 (Affinity Capture-MS), PSMD11 (Affinity Capture-MS), PSMC4 (Affinity Capture-MS), PSMC1 (Affinity Capture-MS)

ESM2 similar proteins: A1Z6K7, A3QVV1, A8WVY9, A9V3P1, B0X2G0, B3M123, B3MJ61, B3MP94, B3N4F1, B3NB67, B3P239, B4GDU3, B4HBD2, B4I1C2, B4I3S1, B4II46, B4J9U3, B4JAS7, B4JGX4, B4KBI4, B4KGS4, B4KSC0, B4LTW0, B4LZ60, B4MDZ0, B4MR33, B4N116, B4NJR8, B4NYU1, B4P3T9, B4PUG5, B4QD77, B4QVL3, B5DJJ2, B5E1N0, O01974, O24412, O74440, P26270, P26516

Diamond homologs: A1CQH7, A1Z6K7, A2QQ10, A3QVV1, A5A6I3, A8PZS4, B0X2G0, B3M123, B3MJ61, B3NB67, B3P239, B4GDU3, B4HBD2, B4I3S1, B4II46, B4J9U3, B4JGX4, B4KBI4, B4KSC0, B4LZ60, B4MDZ0, B4MR33, B4NJR8, B4NYU1, B4PUG5, B4QD77, B4QVL3, B5E1N0, O00303, O04202, O24412, P0CO84, P0CO85, P26270, P26516, P51665, Q1DRC9, Q1HR47, Q295I4, Q3ZBD0

SIGNOR signaling

2 interactions.

AEffectBMechanism
PSMD7“form complex”“26S Proteasome”binding
UBE3A“down-regulates quantity by destabilization”PSMD7ubiquitination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 165 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Autodegradation of the E3 ubiquitin ligase COP12150.2×2e-29
Regulation of activated PAK-2p34 by proteasome mediated degradation2050.2×2e-28
Regulation of ornithine decarboxylase (ODC)2049.0×3e-28
Cross-presentation of soluble exogenous antigens (endosomes)2148.0×4e-29
Vpu mediated degradation of CD42047.9×4e-28
Ubiquitin-dependent degradation of Cyclin D2047.9×4e-28
Proteasome assembly2647.8×6e-36
Hh mutants are degraded by ERAD2146.0×1e-28

GO biological processes:

GO termPartnersFoldFDR
proteasome-mediated ubiquitin-dependent protein catabolic process279.8×2e-16

Disease & clinical

Clinical variants and AI predictions

ClinVar

46 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance35
Likely benign1
Benign1

Top pathogenic / likely-pathogenic (0)

SpliceAI

1224 predictions. Top by Δscore:

VariantEffectΔscore
16:74300112:CA:Cacceptor_loss1.0000
16:74300113:A:ACacceptor_loss1.0000
16:74300113:A:AGacceptor_gain1.0000
16:74300114:G:GCacceptor_gain1.0000
16:74300114:GA:Gacceptor_gain1.0000
16:74300114:GAATC:Gacceptor_gain1.0000
16:74300202:TGCAG:Tdonor_loss1.0000
16:74300204:CAG:Cdonor_loss1.0000
16:74300205:AGG:Adonor_loss1.0000
16:74300208:T:Adonor_loss1.0000
16:74301049:TAG:Tacceptor_loss1.0000
16:74301050:A:AGacceptor_gain1.0000
16:74301051:G:GAacceptor_gain1.0000
16:74301051:GTT:Gacceptor_gain1.0000
16:74301051:GTTC:Gacceptor_gain1.0000
16:74301051:GTTCC:Gacceptor_gain1.0000
16:74301553:A:ACacceptor_loss1.0000
16:74301553:A:AGacceptor_gain1.0000
16:74301554:G:GGacceptor_gain1.0000
16:74301554:GCC:Gacceptor_gain1.0000
16:74301554:GCCA:Gacceptor_gain1.0000
16:74301653:G:GGdonor_gain1.0000
16:74302206:T:TAacceptor_gain1.0000
16:74302207:GCCA:Gacceptor_loss1.0000
16:74302208:CCAG:Cacceptor_loss1.0000
16:74302209:CA:Cacceptor_loss1.0000
16:74302211:GGT:Gacceptor_gain1.0000
16:74302288:ATGAT:Adonor_gain1.0000
16:74302289:TGAT:Tdonor_gain1.0000
16:74302290:GAT:Gdonor_gain1.0000

AlphaMissense

2153 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
16:74296946:T:AV11D1.000
16:74296948:C:GH12D1.000
16:74296952:C:AP13H1.000
16:74296955:T:CL14P1.000
16:74296957:G:AV15M1.000
16:74296961:T:CL16P1.000
16:74296964:T:AL17H1.000
16:74296964:T:CL17P1.000
16:74296966:A:CS18R1.000
16:74296968:T:AS18R1.000
16:74296968:T:GS18R1.000
16:74296975:G:CD21H1.000
16:74296976:A:CD21A1.000
16:74296976:A:TD21V1.000
16:74296988:G:CR25P1.000
16:74300147:T:AV36D1.000
16:74300149:G:CG37R1.000
16:74300149:G:TG37C1.000
16:74300150:G:AG37D1.000
16:74300150:G:TG37V1.000
16:74300156:T:AL39H1.000
16:74300156:T:CL39P1.000
16:74300161:G:AG41R1.000
16:74300161:G:CG41R1.000
16:74300161:G:TG41W1.000
16:74300162:G:AG41E1.000
16:74300162:G:TG41V1.000
16:74300189:T:AV50E1.000
16:74300197:A:CS53R1.000
16:74300199:T:AS53R1.000

dbSNP variants (sampled 300 via entrez): RS1000120332 (16:74297248 GAGTTCGTTTTGCCGA>G), RS1000126706 (16:74296510 CG>C), RS1000348428 (16:74298396 G>A), RS1000684672 (16:74297108 T>C), RS1000912779 (16:74303091 G>A,C,T), RS1001188425 (16:74302140 G>A), RS1001199841 (16:74302414 T>A,C), RS1002044660 (16:74306390 T>G), RS1002390313 (16:74296474 G>A,T), RS1002505065 (16:74306641 A>G), RS1002743741 (16:74295038 G>A), RS1003080114 (16:74306283 T>G), RS1003131195 (16:74306543 G>T), RS1003287591 (16:74299227 C>T), RS1003508173 (16:74303418 C>A,T)

Disease associations

OMIM: gene MIM:157970 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

3 associations (top):

StudyTraitp-value
GCST003992_14Photic sneeze reflex4.000000e-09
GCST008757_5Alcohol consumption1.000000e-14
GCST008811_5Alcohol consumption (drinks per week)2.000000e-10

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0007887autosomal dominant compelling helio-ophthalmic outburst syndrome

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2364701 (PROTEIN COMPLEX), CHEMBL3831214 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 25,628 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL325041BORTEZOMIB413,120
CHEMBL451887CARFILZOMIB412,508

PharmGKB: 1 entry (VIP=true, CPIC=false)

ChEMBL bioactivities

66 potent at pChembl≥5 of 67 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
8.62IC502.4nMBORTEZOMIB
8.59IC502.56nMBORTEZOMIB
8.57IC502.7nMCHEMBL3237863
8.47IC503.4nMCHEMBL6143686
8.41IC503.9nMCHEMBL3237862
8.39IC504.1nMCHEMBL3237864
8.39IC504.1nMCHEMBL3237867
8.32IC504.8nMCHEMBL3237873
8.29IC505.1nMCHEMBL3237865
8.24IC505.7nMCHEMBL3237866
8.24IC505.7nMCHEMBL3237860
8.23IC505.9nMCHEMBL3237868
8.15IC507nMBORTEZOMIB
8.15IC507.1nMCHEMBL3237870
8.15IC507.14nMBORTEZOMIB
8.12IC507.5nMCHEMBL3237871
8.11IC507.7nMCHEMBL3237874
8.11IC507.8nMCHEMBL3237869
8.07IC508.6nMCARFILZOMIB
7.54IC5029nMCHEMBL3237861
7.34IC5046nMCHEMBL3237867
7.27IC5054nMCHEMBL3237872
7.15Kd71.11nMCHEMBL5653589
7.15ED5071.11nMCHEMBL5653589
7.12IC5075nMCHEMBL3237865
7.12IC5076nMCHEMBL3237866
6.96IC50110nMCHEMBL3262766
6.92IC50120nMCHEMBL3237864
6.92IC50120nMBORTEZOMIB
6.89IC50130nMCHEMBL3237869
6.85IC50140nMCHEMBL3237862
6.82IC50150nMCHEMBL3237863
6.77IC50170nMCHEMBL3237873
6.77IC50170nMCHEMBL3262765
6.72IC50190nMCHEMBL3262758
6.68IC50210nMCHEMBL3237870
6.66IC50220nMCHEMBL3262756
6.60IC50250nMCHEMBL3237868
6.47IC50340nMCHEMBL3262752
6.47IC50340nMCHEMBL3262755
6.44IC50360nMCHEMBL3262757
6.42IC50380nMCHEMBL3262754
6.36IC50440nMCHEMBL3262753
6.30IC50500nMCHEMBL3237872
6.20IC50630nMCHEMBL3262762
6.02IC50950nMCHEMBL3262761
6.00IC501000nMCHEMBL3237871
5.96IC501100nMCHEMBL3237862
5.85IC501400nMBELACTOSIN A
5.84IC501440nMBELACTOSIN A

PubChem BioAssay actives

62 with measured affinity, of 137 total; 34 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
Bortezomib1985684: Inhibition of 26S proteasome (unknown origin)ic500.0024uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0027uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0039uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0041uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[5-phenylmethoxy-4-(phenylmethoxymethyl)pentyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0041uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-(4-phenylmethoxybutyl)butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0048uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0051uM
(2S)-2-acetamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]pentanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0057uM
benzyl N-[(2S)-1-[[(2R)-1-[(1R,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]-4-phenylbutan-2-yl]amino]-1-oxopropan-2-yl]carbamate1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0057uM
(2S)-2-[(2,5-dichlorobenzoyl)amino]-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0059uM
(2S)-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]-2-(pyrazine-2-carbonylamino)butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0071uM
(2S)-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]-2-[(6-phenylpyridine-2-carbonyl)amino]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0075uM
[(1R)-1-[[(2S)-2-acetamido-4-oxo-4-[[3-phenylmethoxy-2-(phenylmethoxymethyl)propyl]amino]butanoyl]amino]-3-methylbutyl]boronic acid1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0077uM
(2S)-2-benzamido-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0078uM
Carfilzomib1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.0086uM
(2R,3S)-3-[(2S)-butan-2-yl]-4-oxo-N-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]oxetane-2-carboxamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0290uM
(2S)-2-acetamido-N’-methyl-N-[(1R)-3-methyl-1-[(1S,2S,6R,8S)-2,9,9-trimethyl-3,5-dioxa-4-boratricyclo[6.1.1.02,6]decan-4-yl]butyl]butanediamide1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic500.0540uM
4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149130: Binding affinity to human PSMD7 incubated for 45 mins by Kinobead based pull down assaykd0.0711uM
N-[(1R)-3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]naphthalene-2-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.1100uM
N-[(1R)-3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]-4-(trifluoromethyl)benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.1700uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]naphthalene-2-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.1900uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]-4-(trifluoromethyl)benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.2200uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]pyridine-3-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3400uM
4-methoxy-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3400uM
4-cyano-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3600uM
4-fluoro-N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.3800uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]benzamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.4400uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]oxane-4-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.6300uM
N-[3-[[(2S)-1-[[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-oxo-1-phenylpropyl]thiophene-2-carboxamide1141825: Inhibition of chymotrypsin-like enzyme activity of purified human 20S proteasome using Suc-Leu-Leu-Val-Tyr-AMC as substrate by fluorescence methodic500.9500uM
(2S)-2-[[(2S)-2-aminopropanoyl]amino]-3-[(1S,2S)-2-[[(2R,3S)-3-[(2S)-butan-2-yl]-4-oxooxetane-2-carbonyl]amino]cyclopropyl]propanoic acid1128229: Inhibition of chymotrypsin-like activity of human 20S proteasome using Suc-LLVY-AMC as substrateic501.4000uM
(2S)-2-acetamido-N-[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]-N’-[4-phenylmethoxy-3-(phenylmethoxymethyl)butyl]butanediamide1152964: Inhibition of chymotrypsin-like of human 20S proteasome using chromophoric Suc-LLVY-AMC as substrate after 60 mins by fluorescence assayic502.3000uM
4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149130: Binding affinity to human PSMD7 incubated for 45 mins by Kinobead based pull down assaykd4.1237uM
N-[3-(2-oxo-1,3,4-oxathiazol-5-yl)phenyl]acetamide1137840: Inhibition of chymotrypsin-like activity of 26S proteasome in intact human Karpas 1106p cells assessed as substrate hydrolysis using Suc-LLVY-(D)-aminoluciferin as substrate after 3 hrs by cell-based Proteasome-Glo assayec504.2000uM
(2S)-2-acetamido-N-[(2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxopentan-2-yl]-N’-(4-phenylmethoxybutyl)butanediamide1152964: Inhibition of chymotrypsin-like of human 20S proteasome using chromophoric Suc-LLVY-AMC as substrate after 60 mins by fluorescence assayic505.7000uM

CTD chemical–gene interactions

57 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Aaffects expression, decreases expression, increases expression3
Valproic Acidincreases expression, affects expression3
bisphenol Faffects cotreatment, increases expression2
sodium arseniteincreases abundance, increases expression, decreases expression2
Arsenic Trioxideaffects binding, decreases reaction, increases expression2
Air Pollutantsaffects cotreatment, increases abundance, increases expression, decreases expression2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Tobacco Smoke Pollutionincreases expression2
Cyclosporineincreases expression, decreases expression2
dicrotophosdecreases expression1
2,4,6-tribromophenoldecreases expression1
methylmercuric chlorideincreases expression1
alpha-pineneaffects cotreatment, increases expression, increases abundance1
nobiletindecreases expression, decreases reaction1
sodium arsenatedecreases expression, decreases reaction1
pyrogallol 1,3-dimethyl etheraffects cotreatment, decreases expression1
trichostatin Aaffects expression1
beta-lapachoneincreases expression1
4-aminophenylarsenoxideaffects binding, decreases reaction1
quinolineincreases expression1
methacrylaldehydeaffects cotreatment, increases expression, increases abundance1
di-n-butylphosphoric acidaffects expression1
CGP 52608affects binding, increases reaction1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
torcetrapibincreases expression1
bisphenol Bincreases expression1
dorsomorphinaffects cotreatment, increases expression1
pentabrominated diphenyl ether 100decreases expression1
hexabrominated diphenyl ether 153decreases expression1
bisphenol Sincreases expression1

ChEMBL screening assays

27 unique, capped per target: 27 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3222879BindingInhibition of human 20S proteasome using Suc-LLVY-AMC as substrate preincubated for 30 mins followed by substrate addition measured after 90 mins by fluorescence assayOxathiazole-2-one derivative of bortezomib: Synthesis, stability and proteasome inhibition activity — Medchemcomm

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.