PTGES
gene geneOn this page
Also known as mPGES-1MGST-IVPIG12MGST1-L1TP53I12
Summary
PTGES (prostaglandin E synthase, HGNC:9599) is a protein-coding gene on chromosome 9q34.11, encoding Prostaglandin E synthase (O14684). Terminal enzyme of the cyclooxygenase (COX)-2-mediated prostaglandin E2 (PGE2) biosynthetic pathway.
The protein encoded by this gene is a glutathione-dependent prostaglandin E synthase. The expression of this gene has been shown to be induced by proinflammatory cytokine interleukin 1 beta (IL1B). Its expression can also be induced by tumor suppressor protein TP53, and may be involved in TP53 induced apoptosis. Knockout studies in mice suggest that this gene may contribute to the pathogenesis of collagen-induced arthritis and mediate acute pain during inflammatory responses.
Source: NCBI Gene 9536 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 23 total
- Druggable target: yes — 14 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_004878
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9599 |
| Approved symbol | PTGES |
| Name | prostaglandin E synthase |
| Location | 9q34.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | mPGES-1, MGST-IV, PIG12, MGST1-L1, TP53I12 |
| Ensembl gene | ENSG00000148344 |
| Ensembl biotype | protein_coding |
| OMIM | 605172 |
| Entrez | 9536 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000340607, ENST00000481476
RefSeq mRNA: 1 — MANE Select: NM_004878
NM_004878
CCDS: CCDS6927
Canonical transcript exons
ENST00000340607 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001389095 | 129752887 | 129753042 |
| ENSE00003575415 | 129748655 | 129748737 |
| ENSE00003590714 | 129738349 | 129739860 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 97.03.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 33.0914 / max 974.6950, expressed in 1392 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 102756 | 25.9381 | 1348 |
| 102757 | 4.8984 | 991 |
| 102755 | 2.2249 | 616 |
| 102758 | 0.0300 | 14 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| palpebral conjunctiva | UBERON:0001812 | 97.03 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 92.15 | gold quality |
| mucosa of stomach | UBERON:0001199 | 91.26 | gold quality |
| seminal vesicle | UBERON:0000998 | 91.19 | gold quality |
| cartilage tissue | UBERON:0002418 | 90.90 | gold quality |
| skin of leg | UBERON:0001511 | 90.51 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 90.22 | gold quality |
| skin of abdomen | UBERON:0001416 | 89.13 | gold quality |
| nipple | UBERON:0002030 | 88.55 | gold quality |
| minor salivary gland | UBERON:0001830 | 88.44 | gold quality |
| zone of skin | UBERON:0000014 | 88.41 | gold quality |
| endocervix | UBERON:0000458 | 88.33 | gold quality |
| pancreatic ductal cell | CL:0002079 | 88.15 | silver quality |
| ectocervix | UBERON:0012249 | 88.12 | gold quality |
| placenta | UBERON:0001987 | 87.58 | gold quality |
| decidua | UBERON:0002450 | 87.17 | gold quality |
| mouth mucosa | UBERON:0003729 | 86.76 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 86.31 | gold quality |
| type B pancreatic cell | CL:0000169 | 85.86 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 85.51 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 84.86 | gold quality |
| urinary bladder | UBERON:0001255 | 84.55 | gold quality |
| olfactory bulb | UBERON:0002264 | 84.35 | gold quality |
| buccal mucosa cell | CL:0002336 | 84.22 | silver quality |
| tonsil | UBERON:0002372 | 83.66 | gold quality |
| vagina | UBERON:0000996 | 83.35 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 83.05 | gold quality |
| upper arm skin | UBERON:0004263 | 82.90 | gold quality |
| uterine cervix | UBERON:0000002 | 82.42 | gold quality |
| penis | UBERON:0000989 | 82.35 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 3184.96 |
| E-MTAB-6308 | yes | 485.43 |
| E-MTAB-7052 | yes | 192.91 |
| E-MTAB-6678 | yes | 17.44 |
| E-MTAB-7303 | no | 30.73 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPB, CREB1, EGR1, ESR1, HDAC4, HIF1A, IRF6, NFKB1, NFKB, PPARG, RELA, SP1, SP3
miRNA regulators (miRDB)
46 targeting PTGES, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-1208 | 99.70 | 68.28 | 1533 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-4489 | 99.50 | 65.56 | 785 |
| HSA-MIR-508-5P | 99.41 | 64.25 | 1248 |
| HSA-MIR-130A-5P | 99.33 | 70.26 | 2623 |
| HSA-MIR-4478 | 99.07 | 65.16 | 2320 |
| HSA-MIR-622 | 98.99 | 66.48 | 1050 |
| HSA-MIR-3194-3P | 98.83 | 66.22 | 1167 |
| HSA-MIR-6827-5P | 98.46 | 64.88 | 1256 |
| HSA-MIR-6516-5P | 98.42 | 70.19 | 1551 |
| HSA-MIR-5589-5P | 98.34 | 64.82 | 1148 |
Literature-anchored findings (GeneRIF, showing 40)
- PGES upregulates PGE2 production in human thyrocytes (PMID:12145315)
- no significant change in prostaglandin E synthase protein or mRNA levels at labor indicates that alterations at other points of arachidonic acid metabolism pathway may be of greater importance in affecting local changes in PGE(2) (PMID:12414902)
- IL-1beta-triggered-PGE2 biosynthesis in endothelial cells is probably regulated by induction of both COX-2 and PGE-S. (PMID:12512699)
- It does NOT appear that expression of PGES is the rate-limiting step in PGE2 synthesis in fetal membranes at labor. (PMID:12519887)
- results collectively suggest that aberrant expression of microsomal prostaglandin E synthase-1 in combination with cyclooxygenase-2 can contribute to tumorigenesis (PMID:12626523)
- The microsomal, glutathione dependent enzyme is characterized. (PMID:12664599)
- The purification, kinetics and structure of this microsomal enzyme are determined. (PMID:12672824)
- the expression of prostaglandin E synthase mRNA did not change with labor in full membranes or placenta (PMID:12721500)
- It appears that both the Sp1 and Sp3 proteins are important for the basal expression of PGES, mutational analysis of two Barbie-box elements in the PGES promoter showed that these were not involved in the down-regulation of PGES by phenobarbital (PB). (PMID:12818425)
- mPGES-2 is a unique PGES that can be coupled with both COXs and may play a role in the production of the PGE2 involved in both tissue homeostasis and disease. (PMID:12835322)
- role for NF-kappaB in the co-ordinate induction of COX-2, mPGES and in the corresponding release of PGE2 by IL-1beta (PMID:12860389)
- Enhancement of mPGES expression by PGE(2) via the EP2/EP4 receptors with an increase in cAMP may play an important role in articular inflammation in patients with rheumatoid arthritis (PMID:14558087)
- Co-induction of COX-2 and mPGES in cells of the macula densa suggests that PGE(2) activates renin secretion in humans. (PMID:14630996)
- mPGES, as well as COX-2, can be stimulated by cytokines, potentially contributing to increased prostaglandin production at time of infection-driven preterm labor. (PMID:14671209)
- COX-2 and mPGES-1 are overexpressed in squamous cell carcinoma of the penis (PMID:14871981)
- mPGES-1 and Egr-1 are novel targets of PPARgamma and inhibition of mPGES-1 gene transcription may be one of the mechanisms by which PPARgamma regulates inflammatory responses (PMID:15023995)
- The demonstration of mPGES-1 expression in synovial tissues from patients with rheumatoid arthritis suggests a role for mPGES-1 in the disease process. (PMID:15188353)
- cigarette smoke induced 25-fold increase in microsomal prostaglandin E synthase, the key enzyme involved in the production of PGE2 (PMID:15234907)
- microsomal PGES-1 regulates PGE2 production in gingival fibroblasts stimulated by inflammatory mediators IL-1beta and TNFa (PMID:15379214)
- Is this okay for pge synthase 1? PGH synthase-2, CYP4F8, and PGE synthase-1 likely forms 19-hydroxy-PGE compounds in seminal vesicles and vas deferens (PMID:15789615)
- mPGES-1 expression is upregulated in osteoarthritis versus normal cartilage and proinflammatory cytokines increased mPGES-1 expression in chondrocytes (PMID:15868626)
- Significantly higher expression of microsomal prostaglandin E synthase is associated with metastasis in non-small cell lung cancer (PMID:15870920)
- Patients with carotid atherosclerosis depict an overexpression of COX-2, mPGES-1 and EPs in blood mononuclear cells and plaque of patients with carotid atherosclerosis regulated by nuclear factor-kappaB (PMID:16212965)
- These findings demonstrate a coordinated induction of COX-2 and mPGES-1 by PDB/TG that proceeds through PKC/ERK and Ca2+ signaling cascades, resulting in increased PGE2 production. (PMID:16598755)
- mPGES-1 plays a critical role in promoting astroglioma cell growth via PGE(2)-dependent activation of type II PKA (PMID:16891468)
- Microsomal prostaglandin e synthase-1 overexpression is associated with human non-small-cell lung cancer (PMID:16952028)
- Results suggest that expression of microsomal PGES in addition to COX-2 plays a role in increasing PGE(2) production in endometriosis. (PMID:17295901)
- Regulation of the microsomal PTGES in polarized mononuclear phagocytes and its constitutive expression in neutrophils were studied. (PMID:17505022)
- The findings suggests that mPGES-1 might play a role in pathogenesis of atheroscleros and modulation of inflammatory process involved in plaque stability. (PMID:17680542)
- Demonstrate increased microsomal prostaglandin E synthase in hepatocellular carcinoma tissues from patients with viral hepatitis. (PMID:17696939)
- Carbonyl reductase-1 (CBR1), microsomal prostaglandin E synthase-1 and 2 (mPGES-1, mPGES-2), cytosolic prostaglandin E synthase (cPGES), aldoketoreductase (AKR1C1) and prostaglandin F synthase (AKR1C3) were all expressed in hair follicles. (PMID:17697149)
- mPGES-1 siRNA down-regulates mPGES-1 expression, and neither mPGES-2 nor cPGES substituted for mPGES-1 in a knockdown setting in gingival fibroblasts. (PMID:17707523)
- PAR2 stimulation up-regulated mPGES-1 as well as COX-2, but not mPGES-2 or cPGES, leading to PGE(2) formation. (PMID:17708577)
- The results of this study results support a role for NFkappaB in cytokine-induced prostaglandin E synthase expression in amnion mesenchymal cells in vitro. (PMID:17928629)
- microparticles up-regulate the production of PGE(2) in synovial fibroblasts by inducing COX-2 and mPGES-1 in rheumatoid arthritis (PMID:17968936)
- Transcription factor HIF-1alpha is involved in the up-regulation of mPGES-1 and may therefore play an important role in the metabolism of osteoarthritic cartilage. (PMID:18050215)
- Results show that GPx2 by compartmentalized removal of hydroperoxides silences COX-2 activity and suppresses PGE(2)-dependent COX-2 and mPGES-1 expression. (PMID:18479189)
- 7-hydroxyandrosterone decreased mPGES-1 expression. (PMID:18555503)
- microsomal prostaglandin-E synthase is normally expressed constitutively in human neurons, microglia, astrocytes, and endothelial cells but is up-regulated in Alzheimer’s disease (PMID:18631945)
- R126A and R126Q mPGES-1 exhibit a novel, glutathione-dependent, reductase activity, which allows conversion of prostaglandin H2 into prostaglandin F2alpha. (PMID:18984580)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ptges | ENSDARG00000020136 |
| mus_musculus | Ptges | ENSMUSG00000050737 |
| rattus_norvegicus | Ptges | ENSRNOG00000076770 |
| drosophila_melanogaster | Mgstl | FBGN0025814 |
| drosophila_melanogaster | CG33177 | FBGN0053177 |
| drosophila_melanogaster | CG33178 | FBGN0053178 |
Paralogs (1): MGST1 (ENSG00000008394)
Protein
Protein identifiers
Prostaglandin E synthase — O14684 (reviewed: O14684)
Alternative names: Glutathione peroxidase PTGES, Glutathione transferase PTGES, Microsomal glutathione S-transferase 1-like 1, Microsomal prostaglandin E synthase 1, p53-induced gene 12 protein
All UniProt accessions (1): O14684
UniProt curated annotations — full annotation on UniProt →
Function. Terminal enzyme of the cyclooxygenase (COX)-2-mediated prostaglandin E2 (PGE2) biosynthetic pathway. Catalyzes the glutathione-dependent oxidoreduction of prostaglandin endoperoxide H2 (PGH2) to prostaglandin E2 (PGE2) in response to inflammatory stimuli. Plays a key role in inflammation response, fever and pain. Also catalyzes the oxidoreduction of endocannabinoids into prostaglandin glycerol esters and PGG2 into 15-hydroperoxy-PGE2. In addition, displays low glutathione transferase and glutathione-dependent peroxidase activities, toward 1-chloro-2,4-dinitrobenzene and 5-hydroperoxyicosatetraenoic acid (5-HPETE), respectively.
Subunit / interactions. Homotrimer.
Subcellular location. Membrane. Cytoplasm. Perinuclear region.
Activity regulation. Induced by interleukin IL1B.
Induction. Induced by the interleukin IL1B. Induced By p53/TP53.
Pathway. Lipid metabolism; prostaglandin biosynthesis.
Similarity. Belongs to the MAPEG family.
RefSeq proteins (1): NP_004869* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001129 | Membr-assoc_MAPEG | Family |
| IPR023352 | MAPEG-like_dom_sf | Homologous_superfamily |
| IPR040162 | MGST1-like | Family |
Pfam: PF01124
Enzyme classification (BRENDA):
- EC 5.3.99.3 — prostaglandin-E synthase (BRENDA: 17 organisms, 30 substrates, 487 inhibitors, 29 Km, 6 kcat entries)
Substrate kinetics (BRENDA)
8 substrates with measured Km, best-characterized 8. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| PROSTAGLANDIN H2 | 0.0149–0.5345 | 16 |
| (5Z,13E)-(15S)-9ALPHA,11ALPHA-EPIDIOXY-15-HYDROX | 0.0024–0.16 | 4 |
| (5Z,13E)-(15S)-9A,11A-EPIDIOXY-15-HYDROXYPROSTA- | 0.13–1.61 | 3 |
| GLUTATHIONE | 0.6–0.75 | 3 |
| PROSTAGLANDIN G1 | 0.05 | 1 |
| PROSTAGLANDIN G2 | 0.16 | 1 |
| PROSTAGLANDIN H1 | 0.01 | 1 |
| PROSTAGLANDINE G2 | — | 0 |
Catalyzed reactions (Rhea), 5 shown:
- prostaglandin H2 = prostaglandin E2 (RHEA:12893)
- (5S)-hydroperoxy-(6E,8Z,11Z,14Z)-eicosatetraenoate + 2 glutathione = (5S)-hydroxy-(6E,8Z,11Z,14Z)-eicosatetraenoate + glutathione disulfide + H2O (RHEA:48620)
- 1-chloro-2,4-dinitrobenzene + glutathione = 2,4-dinitrophenyl-S-glutathione + chloride + H(+) (RHEA:51220)
- 2-glyceryl-prostaglandin H2 = 2-glyceryl-prostaglandin E2 (RHEA:53324)
- prostaglandin G2 = (15S)-15-hydroperoxy-prostaglandin E2 (RHEA:64364)
UniProt features (46 total): mutagenesis site 21, helix 7, binding site 5, topological domain 4, transmembrane region 4, site 2, chain 1, sequence conflict 1, strand 1
Structure
Experimental structures (PDB)
18 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4AL0 | X-RAY DIFFRACTION | 1.16 |
| 5TL9 | X-RAY DIFFRACTION | 1.2 |
| 5K0I | X-RAY DIFFRACTION | 1.3 |
| 5T36 | X-RAY DIFFRACTION | 1.4 |
| 6VL4 | X-RAY DIFFRACTION | 1.4 |
| 4YL1 | X-RAY DIFFRACTION | 1.41 |
| 4YL3 | X-RAY DIFFRACTION | 1.41 |
| 4YK5 | X-RAY DIFFRACTION | 1.42 |
| 5BQG | X-RAY DIFFRACTION | 1.44 |
| 4YL0 | X-RAY DIFFRACTION | 1.52 |
| 5BQH | X-RAY DIFFRACTION | 1.6 |
| 5T37 | X-RAY DIFFRACTION | 1.76 |
| 8PYV | X-RAY DIFFRACTION | 1.77 |
| 5BQI | X-RAY DIFFRACTION | 1.88 |
| 4AL1 | X-RAY DIFFRACTION | 1.95 |
| 4BPM | X-RAY DIFFRACTION | 2.08 |
| 4WAB | X-RAY DIFFRACTION | 2.7 |
| 3DWW | ELECTRON CRYSTALLOGRAPHY | 3.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O14684-F1 | 96.25 | 0.94 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 49 (essential for protaglandin-e synthase activity); 126 (essential for protaglandin-e synthase activity)
Ligand- & substrate-binding residues (5): 73–77; 113; 117; 126–130; 38
Mutagenesis-validated functional residues (21):
| Position | Phenotype |
|---|---|
| 36 | keeps about 40-50% of prostaglandin-e synthase activity. |
| 49 | loss of prostaglandin-e synthase activity. |
| 66 | reduces protaglandin-e synthase activity by 50%. |
| 67 | loss of prostaglandin-e synthase activity. |
| 70 | slightly reduced protaglandin-e synthase activity. |
| 70 | no effect on protaglandin-e synthase activity. |
| 72 | reduces protaglandin-e synthase activity by 70%. |
| 73 | retains partial of protaglandin-e synthase activity. |
| 73 | loss of protaglandin-e synthase activity. |
| 110 | loss of protaglandin-e synthase activity. |
| 110 | retains 17.8% of protaglandin-e synthase activity. |
| 114 | retains 21.3% activity of protaglandin-e synthase activity. |
| 117 | loss of protaglandin-e synthase activity. |
| 117 | no effect on protaglandin-e synthase activity. |
| 126 | loss of prostaglandin-e synthase activity. |
| 126 | loss of prostaglandin-e synthase activity. transforms prostaglandin-e synthase activity to prostaglandin-f(2alpha)syntha |
| 127 | no effect on protaglandin-e synthase activity. |
| 130 | loss of protaglandin-e synthase activity. |
| 134 | keeps about 40-50% of prostaglandin-e synthase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-2162123 | Synthesis of Prostaglandins (PG) and Thromboxanes (TX) |
MSigDB gene sets: 308 (showing top):
GSE45365_NK_CELL_VS_CD11B_DC_DN, GSE45365_NK_CELL_VS_BCELL_UP, CREL_01, GOBP_REGULATION_OF_ICOSANOID_SECRETION, GOBP_REGULATION_OF_PROSTAGLANDIN_SECRETION, GOBP_REGULATION_OF_ORGANIC_ACID_TRANSPORT, GOBP_INFLAMMATORY_RESPONSE, GOBP_REGULATION_OF_HEAT_GENERATION, GOBP_LONG_CHAIN_FATTY_ACID_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GGGTGGRR_PAX4_03, PRAMOONJAGO_SOX4_TARGETS_DN, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_LIPID_TRANSPORT, BRUECKNER_TARGETS_OF_MIRLET7A3_DN
GO Biological Process (14): prostaglandin biosynthetic process (GO:0001516), prostaglandin metabolic process (GO:0006693), signal transduction (GO:0007165), cell population proliferation (GO:0008283), negative regulation of cell population proliferation (GO:0008285), sensory perception of pain (GO:0019233), cyclooxygenase pathway (GO:0019371), regulation of fever generation (GO:0031620), positive regulation of prostaglandin secretion (GO:0032308), regulation of inflammatory response (GO:0050727), lipid metabolic process (GO:0006629), fatty acid metabolic process (GO:0006631), fatty acid biosynthetic process (GO:0006633), cellular oxidant detoxification (GO:0098869)
GO Molecular Function (9): glutathione transferase activity (GO:0004364), glutathione peroxidase activity (GO:0004602), prostaglandin-D synthase activity (GO:0004667), glutathione binding (GO:0043295), prostaglandin-E synthase activity (GO:0050220), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), transferase activity (GO:0016740), isomerase activity (GO:0016853)
GO Cellular Component (5): nuclear envelope lumen (GO:0005641), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), perinuclear region of cytoplasm (GO:0048471), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Arachidonate metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| catalytic activity | 3 |
| cellular anatomical structure | 3 |
| cellular process | 2 |
| intramolecular oxidoreductase activity | 2 |
| prostaglandin metabolic process | 1 |
| prostanoid biosynthetic process | 1 |
| prostanoid metabolic process | 1 |
| cell communication | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| sensory perception | 1 |
| prostaglandin biosynthetic process | 1 |
| arachidonate metabolic process | 1 |
| fever generation | 1 |
| regulation of acute inflammatory response | 1 |
| regulation of heat generation | 1 |
| positive regulation of icosanoid secretion | 1 |
| regulation of prostaglandin secretion | 1 |
| prostaglandin secretion | 1 |
| positive regulation of secretion by cell | 1 |
| inflammatory response | 1 |
| regulation of defense response | 1 |
| regulation of response to external stimulus | 1 |
| primary metabolic process | 1 |
| lipid metabolic process | 1 |
| monocarboxylic acid metabolic process | 1 |
| fatty acid metabolic process | 1 |
| lipid biosynthetic process | 1 |
| monocarboxylic acid biosynthetic process | 1 |
| cellular detoxification | 1 |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 1 |
| peroxidase activity | 1 |
| anion binding | 1 |
| modified amino acid binding | 1 |
| oligopeptide binding | 1 |
| sulfur compound binding | 1 |
Protein interactions and networks
STRING
1096 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PTGES | PTGES3 | Q15185 | 971 |
| PTGES | PTGES2 | Q9H7Z7 | 891 |
| PTGES | PTGER4 | P35408 | 872 |
| PTGES | LTC4S | Q16873 | 870 |
| PTGES | MGST2 | Q99735 | 850 |
| PTGES | ALOX5AP | P20292 | 847 |
| PTGES | PTGS2 | P35354 | 829 |
| PTGES | MGST3 | O14880 | 828 |
| PTGES | IL1B | P01584 | 772 |
| PTGES | PTGER3 | P43115 | 749 |
| PTGES | PTGS1 | P23219 | 742 |
| PTGES | PTGER2 | P43116 | 736 |
| PTGES | HPGD | P15428 | 723 |
| PTGES | PTGIS | Q16647 | 715 |
| PTGES | PTGER1 | P34995 | 713 |
IntAct
63 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | HAX1 | psi-mi:“MI:0914”(association) | 0.610 |
| SMCO4 | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEC22A | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| GIMAP5 | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| SERP2 | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| YIF1A | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM19 | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| VAMP3 | PTGES | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | GIMAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | BET1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | TMEM222 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | PLP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | SMCO4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | TMEM65 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | SEC22A | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | GIMAP5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | SERP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | YIF1A | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | EHHADH | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | VAPB | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTGES | VAMP4 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (30): PTGES (Affinity Capture-MS), PTGES (Reconstituted Complex), PTGES (Affinity Capture-MS), PTGES (Two-hybrid), PTGES (Two-hybrid), PTGES (Two-hybrid), PTGES (Two-hybrid), PTGES (Two-hybrid), PTGES (Two-hybrid), PTGES (Two-hybrid), PTGES (Two-hybrid), SERP2 (Two-hybrid), C4orf3 (Two-hybrid), TMEM65 (Two-hybrid), SMCO4 (Two-hybrid)
ESM2 similar proteins: A0A2I1C3V3, A0SYQ0, A1L2F6, A2RST1, A4DA06, A6XA80, A8X8R3, J7FIJ6, O14684, O14880, O74507, O94511, P08011, P0DN89, P10620, P64515, P64516, P70245, P73795, P79382, Q15125, Q16873, Q17428, Q28GF8, Q296J9, Q2KJG4, Q2NKS0, Q3T100, Q41745, Q54GA9, Q57ZC7, Q5R9A6, Q60490, Q60860, Q64L89, Q6GNM0, Q6GPW4, Q6PWL6, Q8HZJ2, Q91VS7
Diamond homologs: A0SYQ0, O14684, P08011, P10620, P79382, Q64L89, Q6PWL6, Q8HZJ2, Q91VS7, Q95L14, Q9JHF3, Q9JM51
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EGR1 | “up-regulates quantity by expression” | PTGES | “transcriptional regulation” |
| PTGES | “up-regulates quantity” | “prostaglandin E2” | “chemical modification” |
| 2,5-dimethylcelecoxib | “down-regulates activity” | PTGES | “post transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 28 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| endoplasmic reticulum to Golgi vesicle-mediated transport | 5 | 30.9× | 1e-04 |
| protein transport | 5 | 10.0× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
23 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 16 |
| Likely benign | 3 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
585 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:129739857:GGCCC:G | acceptor_loss | 1.0000 |
| 9:129739858:GCC:G | acceptor_gain | 1.0000 |
| 9:129739858:GCCC:G | acceptor_loss | 1.0000 |
| 9:129739859:CC:C | acceptor_gain | 1.0000 |
| 9:129739859:CCC:C | acceptor_gain | 1.0000 |
| 9:129739860:CC:C | acceptor_gain | 1.0000 |
| 9:129739860:CCT:C | acceptor_loss | 1.0000 |
| 9:129739861:C:CA | acceptor_loss | 1.0000 |
| 9:129739862:T:G | acceptor_loss | 1.0000 |
| 9:129752883:ATAC:A | donor_loss | 1.0000 |
| 9:129752884:TACCT:T | donor_loss | 1.0000 |
| 9:129752885:A:AC | donor_gain | 1.0000 |
| 9:129752885:A:T | donor_loss | 1.0000 |
| 9:129752886:C:CA | donor_loss | 1.0000 |
| 9:129752886:C:CC | donor_gain | 1.0000 |
| 9:129752886:CCTT:C | donor_gain | 1.0000 |
| 9:129739856:GGGCC:G | acceptor_gain | 0.9900 |
| 9:129739857:GGCC:G | acceptor_gain | 0.9900 |
| 9:129739861:C:CC | acceptor_gain | 0.9900 |
| 9:129739861:C:T | acceptor_gain | 0.9900 |
| 9:129752885:AC:A | donor_gain | 0.9800 |
| 9:129752886:CC:C | donor_gain | 0.9800 |
| 9:129752885:ACCTT:A | donor_gain | 0.9700 |
| 9:129752886:CCTTC:C | donor_gain | 0.9700 |
| 9:129748647:GTACT:G | donor_loss | 0.9600 |
| 9:129748648:TACT:T | donor_loss | 0.9600 |
| 9:129748649:ACT:A | donor_loss | 0.9600 |
| 9:129748650:CTTG:C | donor_loss | 0.9600 |
| 9:129748651:TT:T | donor_loss | 0.9600 |
| 9:129748652:T:TG | donor_loss | 0.9600 |
AlphaMissense
984 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:129748732:A:C | F44L | 0.996 |
| 9:129748732:A:T | F44L | 0.996 |
| 9:129748734:A:G | F44L | 0.996 |
| 9:129739824:G:C | F82L | 0.990 |
| 9:129739824:G:T | F82L | 0.990 |
| 9:129739826:A:G | F82L | 0.990 |
| 9:129752953:G:C | S20R | 0.989 |
| 9:129752953:G:T | S20R | 0.989 |
| 9:129752955:T:G | S20R | 0.989 |
| 9:129739852:C:G | R73P | 0.986 |
| 9:129748719:C:G | D49H | 0.985 |
| 9:129739814:C:G | G86R | 0.983 |
| 9:129739813:C:T | G86D | 0.981 |
| 9:129748717:A:C | D49E | 0.980 |
| 9:129748717:A:T | D49E | 0.980 |
| 9:129739846:T:A | D75V | 0.976 |
| 9:129748718:T:C | D49G | 0.976 |
| 9:129748733:A:C | F44C | 0.976 |
| 9:129752909:C:T | G35D | 0.976 |
| 9:129748733:A:G | F44S | 0.975 |
| 9:129739847:C:G | D75H | 0.974 |
| 9:129739840:T:A | E77V | 0.973 |
| 9:129739733:G:C | H113D | 0.972 |
| 9:129748718:T:G | D49A | 0.972 |
| 9:129748719:C:T | D49N | 0.972 |
| 9:129752900:C:G | R38T | 0.972 |
| 9:129739694:G:T | R126S | 0.971 |
| 9:129739848:G:C | N74K | 0.971 |
| 9:129739848:G:T | N74K | 0.971 |
| 9:129752899:C:A | R38S | 0.971 |
dbSNP variants (sampled 300 via entrez): RS1000061343 (9:129754033 C>A), RS1000089082 (9:129740978 G>A), RS1000134821 (9:129754180 C>T), RS1000397575 (9:129752113 A>G), RS1000428647 (9:129751864 G>A), RS1000627468 (9:129744588 A>T), RS1000632800 (9:129739431 CAT>C,CATAT), RS1000725103 (9:129750699 T>G), RS1001005480 (9:129750644 T>C), RS1001063481 (9:129755034 C>T), RS1001432559 (9:129746229 G>A,T), RS1001662274 (9:129746127 T>G), RS1001865651 (9:129745937 G>A), RS1002185859 (9:129740190 C>T), RS1002486863 (9:129739085 T>C)
Disease associations
OMIM: gene MIM:605172 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003831_43 | Asthma | 4.000000e-08 |
| GCST009180_5 | Pars orbitalis volume | 2.000000e-06 |
| GCST011773_36 | Type 1 diabetes (age at diagnosis) | 5.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004918 | age at diagnosis |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (3): CHEMBL3885623 (PROTEIN FAMILY), CHEMBL4802030 (PROTEIN-PROTEIN INTERACTION), CHEMBL5658 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
14 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 514,416 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL118 | CELECOXIB | 4 | 112,844 |
| CHEMBL15770 | SULINDAC | 4 | 80,712 |
| CHEMBL6 | INDOMETHACIN | 4 | 156,366 |
| CHEMBL603 | ZAFIRLUKAST | 4 | 23,220 |
| CHEMBL93 | ZILEUTON | 4 | 21,372 |
| CHEMBL140 | CURCUMIN | 3 | 93,882 |
| CHEMBL256147 | TILARGININE | 3 | 2,020 |
| CHEMBL297453 | EPIGALOCATECHIN GALLATE | 3 | 22,804 |
| CHEMBL2107052 | THIAMBUTOSINE | 2 | 143 |
| CHEMBL267225 | BOSWELLIC ACID | 2 | 37 |
| CHEMBL300982 | LICOFELONE | 2 | 963 |
| CHEMBL3694493 | VIPOGLANSTAT | 2 | 24 |
| CHEMBL3934885 | FRILUGLANSTAT | 2 | 24 |
| CHEMBL2152712 | LY-3031207 | 1 | 5 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs2302821 | Toxicity | 3 | celecoxib | Colorectal Neoplasms |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2302821 | PTGES | 3 | 2.50 | 1 | celecoxib |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Prostaglandin synthases
Most potent curated ligand interactions (11 total), top 11:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| LY3023703 | Inhibition | 9.03 | pIC50 |
| compound 44 [PMID: 19748780] | Inhibition | 9.0 | pIC50 |
| MF63 | Inhibition | 8.89 | pIC50 |
| vipoglanstat | Inhibition | 8.7 | pIC50 |
| AGU654 | Inhibition | 8.54 | pIC50 |
| compound 30 [PMID: 15953724] | Inhibition | 8.52 | pIC50 |
| compound 39 [PMID: 23623673] | Inhibition | 8.39 | pIC50 |
| friluglanstat | Inhibition | 7.89 | pIC50 |
| zaloglanstat | Inhibition | 7.3 | pIC50 |
| compound III [PMID: 24045148] | Inhibition | 6.74 | pIC50 |
| crisdesalazine | Inhibition | 6.6 | pIC50 |
Binding affinities (BindingDB)
560 measured of 568 human assays (578 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| N-(3-chloro-2-methylphenyl)-6-[(2,5-dichlorobenzoyl)amino]-2-[(3-methoxy-2,2-dimethylpropyl)amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| 2-(methoxymethyl)-N-thiophen-2-yl-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-6-[[2-chloro-6-(trifluoromethyl)benzoyl]amino]-2-(methoxymethyl)-1H-benzimidazole-4-carboxamide | IC50 | 0.1 nM | US-9732066: Heterocyclic derivative and pharmaceutical drug |
| 2-tert-butyl-N-(3-chloro-2-methylphenyl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.2 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-(2,2-dimethylpropylamino)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.2 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| 2-chloro-N-(3-chloro-2-methylphenyl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.3 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-pyrrolidin-1-yl-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.3 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-[2-[(2-methylpropan-2-yl)oxy]ethylamino]-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.3 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-(2,2-dimethylpropyl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.4 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-(cyclopentylamino)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.4 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-piperidin-1-yl-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.4 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-6-[(2,5-dichlorobenzoyl)amino]-2-(2-propan-2-yloxyethylamino)-1H-benzimidazole-4-carboxamide | IC50 | 0.4 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| 6-[(2-chloro-6-fluorobenzoyl)amino]-N-(3-chloro-2-methylphenyl)-2-(2-propan-2-yloxyethylamino)-1H-benzimidazole-4-carboxamide | IC50 | 0.4 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-(1-chloro-2-methylpropan-2-yl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.5 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-(1-methylcyclopropyl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.5 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| 6-[(2-chloro-6-fluorobenzoyl)amino]-N-(3-chloro-2-methylphenyl)-2-[(1-hydroxy-3-methylbutan-2-yl)amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.5 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-cyclopropyl-6-[(2,5-dichlorobenzoyl)amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.7 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-(2-methylpentan-2-yl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 0.8 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-4-methylphenyl)-6-[(2,5-dichlorobenzoyl)amino]-2-(2-methoxyethyl)-1H-benzimidazole-4-carboxamide | IC50 | 0.9 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-N-(3,3-difluorocyclobutyl)-1-methyl-6-[4-(trifluoromethyl)piperidin-1-yl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-(3,3-difluoropyrrolidin-1-yl)-1-methyl-N-(1,1,1-trifluoropropan-2-yl)benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| N-(4-chloro-3-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methyl-6-[4-(trifluoromethyl)piperidin-1-yl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methyl-N-[4-(trifluoromethoxy)phenyl]-6-[4-(trifluoromethyl)piperidin-1-yl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-N-(4,4-difluorocyclohexyl)-1-methyl-6-[4-(trifluoromethyl)piperidin-1-yl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 6-(3-azabicyclo[3.1.0]hexan-3-yl)-N-(3-chloro-4-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-(2,2-difluoroethyl)-6-morpholin-4-yl-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-(2,2-difluoroethyl)-N-[4-(trifluoromethyl)cyclohexyl]-6-[4-(trifluoromethyl)piperidin-1-yl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-(2,2-difluoroethyl)-N-(2,2,3,3,3-pentafluoropropyl)-6-[4-(trifluoromethyl)piperidin-1-yl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-[3-(difluoromethoxy)azetidin-1-yl]-1-methyl-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methyl-6-[methyl(prop-2-ynyl)amino]-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methyl-6-[methyl-[(1-methylcyclopropyl)methyl]amino]-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| 6-(4-cyclopropylpiperazin-1-yl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methyl-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8674113: Compounds |
| N-(3-chloro-4-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-fluoro-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| N-(3-chlorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-fluoro-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| N-(4-chloro-3-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-fluoro-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| N-(3-chloro-5-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-fluoro-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| 6-(2,2-difluoroethoxy)-2-[3-[(2,2-dimethylpropanoylamino)methyl]-2,6-difluoroanilino]-N-(3-fluorophenyl)-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| 2-[2,6-dichloro-3-[[(3,3-difluoroazetidine-1-carbonyl)amino]methyl]anilino]-6-(2,2-difluoroethoxy)-1-methyl-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| 2-[2,6-dichloro-3-[[(2-methylpyrrolidine-1-carbonyl)amino]methyl]anilino]-6-(2,2-difluoroethoxy)-1-methyl-N-[4-(trifluoromethyl)cyclohexyl]benzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| 2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-(2,2-difluoroethoxy)-1-methyl-N-(2,3,6-trifluorophenyl)benzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| N-(3-chloro-4-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-(2-fluoroethoxy)-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| N-(3-chloro-4-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-6-(2-methoxyethoxy)-1-methylbenzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| N-(3-chloro-4-fluorophenyl)-2-[2,6-dichloro-3-[(2,2-dimethylpropanoylamino)methyl]anilino]-1-methyl-6-(oxolan-3-yloxy)benzimidazole-5-carboxamide | IC50 | 1 nM | US-8759537: 3H-imidazo [4, 5-C] pyridine-6-carboxamides as anti-inflammatory agents |
| 2-tert-butyl-N-(3-chloro-4-methylphenyl)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-6-[(2,6-dichlorobenzoyl)amino]-2-[(2R)-oxolan-2-yl]-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-[(3S)-3-(dimethylamino)pyrrolidin-1-yl]-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-2-[(2-hydroxy-2-methylpropyl)amino]-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-2-methylphenyl)-6-[(2,4-dichlorobenzoyl)amino]-2-(dimethylamino)-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(2,3-dihydro-1H-inden-5-yl)-2-(dimethylamino)-6-[[2-(trifluoromethyl)benzoyl]amino]-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
| N-(3-chloro-4-methylphenyl)-2-cyclopropyl-6-[(2,5-dichlorobenzoyl)amino]-1H-benzimidazole-4-carboxamide | IC50 | 1 nM | US-9216968: Heterocyclic derivative and pharmaceutical drug |
ChEMBL bioactivities
2584 potent at pChembl≥5 of 2649 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | IC50 | 0.01 | nM | CHEMBL5827042 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL5775016 |
| 10.22 | IC50 | 0.06 | nM | CHEMBL6033854 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3342696 |
| 10.00 | Ki | 0.1 | nM | CHEMBL3342696 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3896436 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3971013 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL4444875 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL5877581 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL5965838 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL5850581 |
| 9.74 | IC50 | 0.18 | nM | CHEMBL5803627 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3956115 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3981545 |
| 9.66 | IC50 | 0.22 | nM | CHEMBL6148535 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3930662 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3899486 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3962760 |
| 9.51 | IC50 | 0.31 | nM | CHEMBL6001700 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL567696 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3979324 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3952794 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3892483 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3926077 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3897304 |
| 9.32 | IC50 | 0.48 | nM | CHEMBL5969766 |
| 9.32 | IC50 | 0.48 | nM | CHEMBL5905258 |
| 9.30 | IC50 | 0.5 | nM | CHEMBL3920661 |
| 9.30 | IC50 | 0.5 | nM | CHEMBL3970074 |
| 9.30 | IC50 | 0.5 | nM | CHEMBL3960895 |
| 9.24 | IC50 | 0.57 | nM | CHEMBL6108989 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL3962924 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL482674 |
| 9.12 | IC50 | 0.76 | nM | CHEMBL5862163 |
| 9.11 | IC50 | 0.78 | nM | CHEMBL5917520 |
| 9.10 | IC50 | 0.8 | nM | CHEMBL3984205 |
| 9.10 | IC50 | 0.8 | nM | CHEMBL483894 |
| 9.07 | IC50 | 0.86 | nM | CHEMBL5806202 |
| 9.06 | IC50 | 0.88 | nM | CHEMBL5842036 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL3342693 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL3902537 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL521285 |
| 9.03 | IC50 | 0.94 | nM | CHEMBL3342693 |
| 9.00 | IC50 | 1 | nM | CHEMBL412099 |
| 9.00 | IC50 | 1 | nM | CHEMBL3604189 |
| 9.00 | IC50 | 1 | nM | CHEMBL1683210 |
| 9.00 | IC50 | 1 | nM | CHEMBL1289402 |
| 9.00 | IC50 | 1 | nM | CHEMBL565406 |
| 9.00 | IC50 | 1 | nM | CHEMBL3938686 |
| 9.00 | IC50 | 1 | nM | CHEMBL3956184 |
PubChem BioAssay actives
1428 with measured affinity, of 2650 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[2-chloro-5-[[[1-(trifluoromethyl)cyclopropanecarbonyl]amino]methyl]anilino]-N-(cyclopropylmethyl)-6-(2,2-difluoroethoxy)-1-methylbenzimidazole-5-carboxamide | 1625258: Inhibition of human mPGES-1 expressed in CHO-K1 cells using PGH2 as substrate assessed as PGE2 formation preincubated for 20 mins followed by addition of substrate measured after 60 secs by HTRF assay | ic50 | 0.0001 | uM |
| N-(3-chloro-2-methylphenyl)-6-[[2-chloro-6-(trifluoromethyl)benzoyl]amino]-2-(methoxymethyl)-1H-benzimidazole-4-carboxamide | 1166408: Inhibition of human mPGES-1 | ic50 | 0.0001 | uM |
| 2-[9-(2-hydroxy-2-methylpropyl)-6-(3-methylbutoxy)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 1239703: Inhibition of mPGES-1 in IL-1beta-stimulated human A549 cell microsomal membranes assessed as reduction in PGE2 formation incubated for 15 mins using PGH2 substrate by RP-HPLC method | ic50 | 0.0004 | uM |
| 2-[6-chloro-9-(3-hydroxy-3-methylbutyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 596824: Inhibition of human microsomal PGES1 in cell-free system assessed as inhibition of conversion of PGH2 to PGE2 by HPLC assay | ic50 | 0.0007 | uM |
| 5-[5-bromo-2-(2-chloro-6-fluorophenyl)-1H-imidazol-4-yl]-2-[2-[4-(trifluoromethyl)phenyl]ethynyl]pyridine | 465972: Inhibition of mPGES1 | ic50 | 0.0008 | uM |
| 2-[6-(2-cyclopropylethoxy)-9-(2-hydroxy-2-methylpropyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0009 | uM |
| 2-(difluoromethyl)-5-[(2-methylpropanoylamino)methyl]-N-[5-methyl-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-2-yl]pyridine-3-carboxamide | 1166403: Inhibition of human mPGES-1 expressed in 293E cell microsomes using PGH2 substrate by LC/MS analysis1 | ic50 | 0.0009 | uM |
| 2-[6-chloro-9-[2-(1-hydroxycyclopentyl)ethynyl]-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[9-(2-cyclopropylethynyl)-6-(3-hydroxy-3-methylbut-1-ynyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-chloro-9-(2-pyridin-4-ylethynyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-chloro-9-(2-pyridin-3-ylethynyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-chloro-9-(3-hydroxy-3-methylbut-1-ynyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| (4S)-N-[4-(hydroxymethyl)cyclohexyl]-3,3-dimethyl-1-(8-methylquinolin-2-yl)piperidine-4-carboxamide | 1319328: Inhibition of human mPGES-1 expressed in 293E cells assessed as reduction in conversion of PGH2 to PGE2 after 1.5 min by LC/MS analysis | ic50 | 0.0010 | uM |
| (4S)-N-[(1S,3S)-3-(hydroxymethyl)cyclohexyl]-3,3-dimethyl-1-(8-methylquinolin-2-yl)piperidine-4-carboxamide | 1319328: Inhibition of human mPGES-1 expressed in 293E cells assessed as reduction in conversion of PGH2 to PGE2 after 1.5 min by LC/MS analysis | ic50 | 0.0010 | uM |
| 1-[[3-(2-phenylethynyl)phenyl]methyl]-3-propan-2-yl-1-[[3-(2-pyridin-3-ylethynyl)phenyl]methyl]urea | 1239703: Inhibition of mPGES-1 in IL-1beta-stimulated human A549 cell microsomal membranes assessed as reduction in PGE2 formation incubated for 15 mins using PGH2 substrate by RP-HPLC method | ic50 | 0.0010 | uM |
| 2-[2-[(1S,2S)-2-[[1-(8-methylquinolin-2-yl)piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0010 | uM |
| 4-methyl-2-[2-[(1S,2S)-2-[[1-[4-(trifluoromethyl)phenyl]piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0010 | uM |
| 2-[2-[(1S,2S)-2-[[1-[4-(trifluoromethoxy)phenyl]piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0010 | uM |
| 4-fluoro-2-[2-[(1S,2S)-2-[[1-[4-(trifluoromethyl)phenyl]piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0010 | uM |
| 4-chloro-2-[2-[(1S,2S)-2-[[1-[4-(trifluoromethyl)phenyl]piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0010 | uM |
| 2-[9-ethyl-6-(3-hydroxy-3-methylbut-1-ynyl)-3H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-(6-chloro-3H-phenanthro[9,10-d]imidazol-2-yl)benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-(2-cyclopropylethoxy)-9-(2-hydroxy-2-methylpropyl)-1H-phenanthro[9,10-d]imidazol-2-yl]-5-fluorobenzene-1,3-dicarbonitrile | 1239703: Inhibition of mPGES-1 in IL-1beta-stimulated human A549 cell microsomal membranes assessed as reduction in PGE2 formation incubated for 15 mins using PGH2 substrate by RP-HPLC method | ic50 | 0.0010 | uM |
| 2-[9-(2-hydroxy-2-methylpropyl)-6-(4,4,4-trifluorobutoxy)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-bromo-2-(2-chloro-6-fluorophenyl)-1H-phenanthro[9,10-d]imidazol-9-yl]-1,1,1,3,3,3-hexafluoropropan-2-ol | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-chloro-9-(3-cyanopropoxy)-3H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 2-[6-chloro-9-(2-pyrrol-1-ylethoxy)-3H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0010 | uM |
| 5-[5-bromo-2-(2-chloro-6-fluorophenyl)-1H-imidazol-4-yl]-2-(2-phenylethynyl)pyridine | 1239703: Inhibition of mPGES-1 in IL-1beta-stimulated human A549 cell microsomal membranes assessed as reduction in PGE2 formation incubated for 15 mins using PGH2 substrate by RP-HPLC method | ic50 | 0.0010 | uM |
| 1-[[3-[2-(4-chlorophenyl)ethynyl]phenyl]methyl]-3-propan-2-yl-1-[[3-(2-pyridin-2-ylethynyl)phenyl]methyl]urea | 580217: Inhibition of mPGES1 | ic50 | 0.0010 | uM |
| 1-[[3-(2-cyclopropylethynyl)phenyl]methyl]-1-[[3-(2-phenylethynyl)phenyl]methyl]-3-propan-2-ylurea | 1239703: Inhibition of mPGES-1 in IL-1beta-stimulated human A549 cell microsomal membranes assessed as reduction in PGE2 formation incubated for 15 mins using PGH2 substrate by RP-HPLC method | ic50 | 0.0010 | uM |
| 1-[[3-[2-(4-chlorophenyl)ethynyl]phenyl]methyl]-3-propan-2-yl-1-[[3-(2-pyridin-3-ylethynyl)phenyl]methyl]urea | 580217: Inhibition of mPGES1 | ic50 | 0.0010 | uM |
| 3-[4-(3-cyanopropoxy)-3-methoxyphenyl]benzo[f]quinoline-1-carboxylic acid | 733351: Inhibition of full-length microsomal PGES-1 (unknown origin) expressed in Escherichia coli Rosetta(DE3) using PGH2 as substrate assessed as inhibition of PGH2 conversion to PGE2 incubated 15 mins prior to substrate addition measured after 1 min by EIA | ic50 | 0.0011 | uM |
| (4-phenylmethoxyphenyl) N-(3-chloroanilino)-N-(4-chlorophenyl)sulfonylcarbamate | 1851442: Inhibition of human mPGES-1 assessed as reduction in PGE2 production | ic50 | 0.0012 | uM |
| 2-[(3Z)-3-[3-(carboxymethyl)-4-oxo-2-sulfanylidene-1,3-thiazolidin-5-ylidene]-2-oxoindol-1-yl]acetic acid | 733351: Inhibition of full-length microsomal PGES-1 (unknown origin) expressed in Escherichia coli Rosetta(DE3) using PGH2 as substrate assessed as inhibition of PGH2 conversion to PGE2 incubated 15 mins prior to substrate addition measured after 1 min by EIA | ic50 | 0.0018 | uM |
| 2-[6-chloro-9-(3-methoxyprop-1-ynyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0020 | uM |
| 2-[6-chloro-9-(4-methylsulfonylphenyl)-3H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0020 | uM |
| (4S)-N-[(2S,4S)-2-(hydroxymethyl)oxan-4-yl]-3,3-dimethyl-1-(8-methylquinolin-2-yl)piperidine-4-carboxamide | 1319328: Inhibition of human mPGES-1 expressed in 293E cells assessed as reduction in conversion of PGH2 to PGE2 after 1.5 min by LC/MS analysis | ic50 | 0.0020 | uM |
| 2-[2-[(1S,2S)-2-[[1-[5-(trifluoromethyl)-2-pyridinyl]piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0020 | uM |
| 2-[2-[(1S,2S)-2-[[1-[4-(trifluoromethyl)phenyl]piperidine-4-carbonyl]amino]cyclopentyl]ethyl]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0020 | uM |
| 4-chloro-2-[[(1R,2S)-2-[[1-[4-(trifluoromethyl)phenyl]piperidine-4-carbonyl]amino]cyclopentyl]methoxy]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0020 | uM |
| 4-chloro-2-[[(1S,2S)-2-[(1-phenylpiperidine-4-carbonyl)amino]cyclopentyl]methylamino]benzoic acid | 1432466: Inhibition of human mPGES1 expressed in HEK293 microsomes assessed as reduction in PGE2 production using PGH2 as substrate after 2.5 mins by LC-MS analysis | ic50 | 0.0020 | uM |
| 2-[6-chloro-9-(2-hydroxy-2-methylpropyl)-1H-phenanthro[9,10-d]imidazol-2-yl]benzene-1,3-dicarbonitrile | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0020 | uM |
| 6-bromo-2-(2-chloro-6-fluorophenyl)-3H-phenanthro[9,10-d]imidazole | 446412: Displacement of [3H]PGH2 from human recombinant PGES1 expressed in CHOK1 cells | ic50 | 0.0020 | uM |
| 4-chloro-2-[[1,3-dioxo-2-(1-phenylethyl)isoindole-5-carbonyl]amino]benzoic acid | 733351: Inhibition of full-length microsomal PGES-1 (unknown origin) expressed in Escherichia coli Rosetta(DE3) using PGH2 as substrate assessed as inhibition of PGH2 conversion to PGE2 incubated 15 mins prior to substrate addition measured after 1 min by EIA | ic50 | 0.0020 | uM |
| 1-[[3-[2-(4-chlorophenyl)ethynyl]phenyl]methyl]-3-propan-2-yl-1-[[3-(2-pyridin-4-ylethynyl)phenyl]methyl]urea | 580217: Inhibition of mPGES1 | ic50 | 0.0020 | uM |
| N-[3-[(4-bromophenyl)carbamoyl]-4-(2,2-difluoroethoxy)phenyl]-2-chloro-5-[(2,2-dimethylpropanoylamino)methyl]benzamide | 1166402: Inhibition of human recombinant mPGES-1 using PGH2 as substrate incubated for 25 mins prior to substrate addition measured after 1 min by HTRF method | ic50 | 0.0020 | uM |
| 1-[[3-(2-phenylethynyl)phenyl]methyl]-1-[[5-(2-phenylethynyl)-3-pyridinyl]methyl]-3-propan-2-ylurea | 580217: Inhibition of mPGES1 | ic50 | 0.0020 | uM |
| 2-chloro-5-[5-[(Z)-[5-(2-chlorophenyl)-6-ethoxycarbonyl-7-methyl-3-oxo-5H-[1,3]thiazolo[3,2-a]pyrimidin-2-ylidene]methyl]furan-2-yl]benzoic acid | 733351: Inhibition of full-length microsomal PGES-1 (unknown origin) expressed in Escherichia coli Rosetta(DE3) using PGH2 as substrate assessed as inhibition of PGH2 conversion to PGE2 incubated 15 mins prior to substrate addition measured after 1 min by EIA | ic50 | 0.0020 | uM |
| 1-[5-chloro-6-[4-(trifluoromethoxy)phenyl]-1,3-benzoxazol-2-yl]-N-[(1S,3S)-3-(hydroxymethyl)cyclohexyl]piperidine-4-carboxamide | 751358: Inhibition of mPGES-1 (unknown origin) using PGH2 as substrate assessed as PGE2 synthesis by ELISA | ic50 | 0.0020 | uM |
| N-(cyclohexylmethyl)-2-[(3,5-dichloro-4-pyridinyl)amino]-7,7-dimethyl-3,8-dihydrofuro[3,2-e]benzimidazole-5-carboxamide | 1367392: Inhibition of recombinant human mPGES1 expressed in CHO cells using PGH2 as substrate pretreated for 10 mins followed by substrate addition measured after 1 min | ic50 | 0.0022 | uM |
CTD chemical–gene interactions
108 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | affects cotreatment, increases expression, decreases expression | 4 |
| cobaltiprotoporphyrin | decreases reaction, increases expression, increases abundance, increases reaction | 3 |
| Cisplatin | affects cotreatment, decreases expression, increases expression | 3 |
| Dinoprostone | increases chemical synthesis, increases reaction, decreases reaction, increases abundance, increases expression | 3 |
| MK-886 | decreases activity | 2 |
| Resveratrol | affects cotreatment, increases expression | 2 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Diethylhexyl Phthalate | affects cotreatment, affects reaction, increases expression, decreases expression | 2 |
| Glucosamine | increases expression, affects cotreatment, decreases expression, decreases reaction | 2 |
| Nickel | increases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| Tetrachlorodibenzodioxin | affects cotreatment, increases expression, decreases expression | 2 |
| Tretinoin | increases expression | 2 |
| Valproic Acid | increases methylation, affects expression | 2 |
| Raloxifene Hydrochloride | affects cotreatment, decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| 2-anisidine | increases expression | 1 |
| pirinixic acid | decreases activity | 1 |
| bisphenol A | increases expression | 1 |
| diethyl phthalate | increases expression, affects cotreatment, affects reaction | 1 |
| gingerol | decreases expression, increases expression | 1 |
| methylselenic acid | decreases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| lupeol | decreases reaction, increases expression | 1 |
| testosterone undecanoate | decreases expression, affects cotreatment | 1 |
| cholest-5-en-3 beta,7 alpha-diol | increases expression, decreases reaction | 1 |
| diisononyl phthalate | increases expression, affects cotreatment, affects reaction | 1 |
| mancozeb | decreases reaction, increases expression | 1 |
ChEMBL screening assays
316 unique, capped per target: 313 binding, 3 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3873336 | Binding | Inhibition of COX-2/mPGES1 in human HeLa cells assessed as reduction in TNF-alpha induced PGE2 production at 50 uM after 15 mins followed by ELISA | Inhibition of the enzymes in the leukotriene and prostaglandin pathways in inflammation by 3-aryl isocoumarins. — Eur J Med Chem |
| CHEMBL1743243 | ADMET | Substrates for human microsomal glutathione transferase PTGEs | Casarett and Doull’s Toxicology The Basic Science of Poisons, 7th edition |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1YL | Abcam A-549 PTGES KO | Cancer cell line | Male |
| CVCL_D2CQ | Abcam HCT 116 PTGES KO | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.