PTPA
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Also known as PR53
Summary
PTPA (protein phosphatase 2 phosphatase activator, HGNC:9308) is a protein-coding gene on chromosome 9q34.11, encoding Serine/threonine-protein phosphatase 2A activator (Q15257). PPIases accelerate the folding of proteins.
Protein phosphatase 2A is one of the four major Ser/Thr phosphatases and is implicated in the negative control of cell growth and division. Protein phosphatase 2A holoenzymes are heterotrimeric proteins composed of a structural subunit A, a catalytic subunit C, and a regulatory subunit B. The regulatory subunit is encoded by a diverse set of genes that have been grouped into the B/PR55, B’/PR61, and B’’/PR72 families. These different regulatory subunits confer distinct enzymatic specificities and intracellular localizations to the holozenzyme. The product of this gene belongs to the B’ family. This gene encodes a specific phosphotyrosyl phosphatase activator of the dimeric form of protein phosphatase 2A. Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 5524 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Parkinson disease (Moderate, GenCC) — +1 more curated relationship
- GWAS associations: 12
- Clinical variants (ClinVar): 30 total — 2 pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_178000
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9308 |
| Approved symbol | PTPA |
| Name | protein phosphatase 2 phosphatase activator |
| Location | 9q34.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PR53 |
| Ensembl gene | ENSG00000119383 |
| Ensembl biotype | protein_coding |
| OMIM | 600756 |
| Entrez | 5524 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 29 protein_coding
ENST00000337738, ENST00000347048, ENST00000348141, ENST00000355007, ENST00000357197, ENST00000358994, ENST00000393370, ENST00000411917, ENST00000414331, ENST00000414510, ENST00000417504, ENST00000419582, ENST00000423100, ENST00000432124, ENST00000432651, ENST00000434095, ENST00000435132, ENST00000435305, ENST00000436883, ENST00000440346, ENST00000452489, ENST00000453358, ENST00000455240, ENST00000455292, ENST00000868578, ENST00000918673, ENST00000918674, ENST00000918675, ENST00000918676
RefSeq mRNA: 6 — MANE Select: NM_178000
NM_001193397, NM_001271832, NM_021131, NM_178000, NM_178001, NM_178003
CCDS: CCDS65156, CCDS6920, CCDS75917
Canonical transcript exons
ENST00000393370 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001457949 | 129147387 | 129148946 |
| ENSE00001597590 | 129134795 | 129134894 |
| ENSE00001711396 | 129136471 | 129136595 |
| ENSE00001760922 | 129137592 | 129137692 |
| ENSE00001804284 | 129128985 | 129129110 |
| ENSE00001930387 | 129111415 | 129111631 |
| ENSE00003576525 | 129120513 | 129120610 |
| ENSE00003687161 | 129123052 | 129123138 |
| ENSE00003785540 | 129142445 | 129142552 |
| ENSE00003788994 | 129131522 | 129131639 |
Expression profiles
Bgee: expression breadth ubiquitous, 289 present calls, max score 99.53.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.3710 / max 144.9108, expressed in 1766 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 98879 | 39.9218 | 1823 |
| 98877 | 8.4013 | 1738 |
| 98883 | 5.6379 | 1471 |
| 98880 | 5.0931 | 1634 |
| 98889 | 1.4921 | 738 |
| 98876 | 0.9251 | 487 |
| 98878 | 0.7351 | 478 |
| 98890 | 0.5695 | 329 |
| 98894 | 0.3332 | 151 |
| 205631 | 0.0022 | 1 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endometrium epithelium | UBERON:0004811 | 99.53 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 99.26 | gold quality |
| apex of heart | UBERON:0002098 | 98.77 | gold quality |
| frontal pole | UBERON:0002795 | 98.77 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 98.30 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.24 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 98.20 | gold quality |
| cingulate cortex | UBERON:0003027 | 98.18 | gold quality |
| right testis | UBERON:0004534 | 98.07 | gold quality |
| left testis | UBERON:0004533 | 98.03 | gold quality |
| prefrontal cortex | UBERON:0000451 | 98.02 | gold quality |
| paraflocculus | UBERON:0005351 | 97.96 | gold quality |
| amygdala | UBERON:0001876 | 97.49 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.47 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.33 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.30 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.28 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 97.27 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 97.23 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.20 | gold quality |
| frontal cortex | UBERON:0001870 | 97.11 | gold quality |
| metanephros cortex | UBERON:0010533 | 97.11 | gold quality |
| cardiac ventricle | UBERON:0002082 | 97.10 | gold quality |
| right atrium auricular region | UBERON:0006631 | 97.09 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.08 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.06 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.04 | gold quality |
| nucleus accumbens | UBERON:0001882 | 97.03 | gold quality |
| neocortex | UBERON:0001950 | 97.00 | gold quality |
| adrenal cortex | UBERON:0001235 | 96.93 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.26 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
71 targeting PTPA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4713-5P | 99.78 | 67.80 | 1794 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-6794-5P | 99.76 | 66.38 | 1048 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6752-3P | 99.72 | 66.71 | 1587 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-3202 | 99.66 | 67.70 | 2737 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-5584-5P | 99.49 | 68.22 | 2814 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-185-5P | 99.35 | 68.60 | 2497 |
| HSA-MIR-4644 | 99.35 | 69.12 | 2514 |
Literature-anchored findings (GeneRIF, showing 40)
- Protein phosphatase 2A regulates estrogen receptor alpha (ER) expression through modulation of ER mRNA stability. (PMID:15965230)
- Activation of erbB1 leads to phosphorylation of protein phosphatase 2A, inhibiting its activity, which provides a rapid means of sensing the loss of epithelial integrity and subsequently restoring barrier function. (PMID:16293617)
- PTPA belongs to a novel peptidyl-prolyl cis/trans-isomerase (PPIase) family (PMID:16380387)
- crystal structure of PTPA, a human PP2A phosphatase activator (PMID:16782712)
- The crystal structures of PTPA was determined, revealing an all alpha-helical protein fold that is radically different from other PPIases. (PMID:16885030)
- These observations reveal significant insights into the function and mechanism of PTPA and have important ramifications for understanding PP2A function. (PMID:16916641)
- In retinoic acid treated ovarian cancer cells PP2A, a serine/threonine phosphatase, binds and dephosphorylates Rb2/p130. (review) (PMID:16936753)
- These observations suggest that PP2A, via the dephosphorylation of multiple serines including the 14-3-3 binding sites and serine 298, controls HDAC4 nuclear import. (PMID:18045992)
- PP2A may regulate cytokinesis by dephosphorylating MgcRacGAP and its interacting partners (PMID:18201571)
- Phosphorylated PP2A is associated with Alzheimer neurofibrillary pathology (PMID:18208556)
- PP2A and AIP1 cooperatively induce activation of ASK1-JNK signaling and vascular endothelial cell apoptosis. (PMID:18292600)
- PP2Ac (alpha) can negatively regulate integrin alpha(IIb)beta(3) signaling by suppressing the ERK1/2 signaling pathway (PMID:18334487)
- Hepatitis C virus-induced over-expression of PP2A in the liver contributes to the pathogenesis of insulin resistance in patients with chronic hepatitis C. (PMID:18486982)
- Increased demethylation of PP2A mediated by Abeta overproduction or estrogen deficiency may contribute to the reduced PP2A activity observed in the AD brain, resulting in the compromised dephosphorylation of abnormally hyperphosphorylated tau. (PMID:18586097)
- The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action. (PMID:18931662)
- These results indicate that HDAC3 may act as a scaffold protein for PP2A to regulate the LIF/STAT3-mediated signaling pathway. (PMID:19121623)
- B56epsilon is alternatively translated adds a new level of regulation to PP2A holoenzymes (PMID:19129191)
- Lyn is downstream of Jak2, and Jak2 maintains activated Lyn kinase in CML through the SET-PP2A-Shp1 pathway. (PMID:19234487)
- These data suggest that ceramide plays a role in activating PP2A to terminate ongoing IL-8 production. (PMID:19286927)
- important for CTLA-4-mediated T cell activation (PMID:19405949)
- oxidative stress regulates the phosphorylation status of nonribosomal rpS3 by both activating PKCdelta and blocking the PP2A interaction with rpS3 (PMID:19458393)
- These data highlight the existence of a feedback loop in normal cells whereby ERK silencing is associated with decreased PP2A activity and consequent MEK activation. (PMID:19465001)
- Constitutive basal activity of PKR is required for leukemic cell homeostasis and growth and functions as a negative regulator of AKT, thereby increasing the pool of potentially active GSK-3. (PMID:19507191)
- These data indicate that PP2A-mediated RPA32 dephosphorylation is required for the efficient DNA damage repair. (PMID:19704001)
- Women who had both the PPP2R1A risk haplotype and a history of proliferative breast disease had an odds ratio of 2.44 (95% CI, 1.7-3.5) for the subsequent development of breast cancer. (PMID:19890961)
- We show here that protein phosphatase 2A (PP2A), which interacts with condensin II but not condensin I, plays an essential role in targeting condensin II to chromosomes. (PMID:19915589)
- This study highlights a novel signaling role of PP2A by Pin1 and implicates Pin1 as a therapeutic target to reduce aberrant phosphorylation of NF proteins in neurodegenerative disorders such as AD, PD, and ALS. (PMID:19940183)
- Data show that distinct phosphatases dephosphorylate conserved AKT motifs within the FOXO family and that PP2A is entwined in a dynamic interplay with AKT and 14-3-3 to directly regulate FOXO3a subcellular localization and transcriptional activation. (PMID:20110348)
- A critical role of PP2A is uncovered in maintaining embryonic stem cell self-renewal capability, and a defined medium has been developed for their culture. (PMID:20306465)
- Because the impacts of tau phosphorylation on its biological activity and on neurofibrillary degeneration are site-specific, this study provides a new insight into the role of PP2A down-regulation in neurofibrillary degeneration in Alzheimers disease. (PMID:20308788)
- Protein phosphatase 2A has an essential role in the activation of gamma-irradiation-induced G2/M checkpoint response. (PMID:20498628)
- Sphingosine interaction with acidic leucine-rich nuclear phosphoprotein-32A (ANP32A) regulates PP2A activity and cyclooxygenase (COX)-2 expression in human endothelial cells. (PMID:20558741)
- cyclin dependent kinase 5 interacts with p53 to phosphorylate it at Serine20 and Serine46 residues thereby promoting its recruitment on p21 and bax promoters (PMID:20673369)
- Loss of PP2A is associated with acute myeloid leukemia. (PMID:21233840)
- findings suggest that decreased B55alpha expression in AML is at least partially responsible for increased AKT signaling in AML and suggests that therapeutic targeting of PP2A could counteract this (PMID:21660042)
- Compared with healthy individuals, the activity of PP2A in AML patients is obviously lower. (PMID:21729530)
- when lung fibroblasts are attached to collagen matrix, the beta1 integrin/Src/PP2A-mediated 4EBP-1 regulatory pathway is activated (PMID:21784851)
- Striatin orchestrates the regulation of Mst3 by PP2A. (PMID:21985334)
- Data reveal that the tumour suppressor PP2A may act via S369 to regulated NEDD9-mediated cell spreading. (PMID:22061964)
- PP2A activity predicts poor survival in glioblastoma multiforme. (PMID:22253878)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ptpa | ENSDARG00000031985 |
| mus_musculus | Ptpa | ENSMUSG00000039515 |
| rattus_norvegicus | Ptpa | ENSRNOG00000018457 |
| drosophila_melanogaster | Ptpa | FBGN0016698 |
| drosophila_melanogaster | CG8509 | FBGN0030696 |
| drosophila_melanogaster | CG2104 | FBGN0037365 |
| caenorhabditis_elegans | WBGENE00022185 |
Protein
Protein identifiers
Serine/threonine-protein phosphatase 2A activator — Q15257 (reviewed: Q15257)
Alternative names: PP2A, subunit B’, PR53 isoform, Phosphotyrosyl phosphatase activator, Serine/threonine-protein phosphatase 2A regulatory subunit 4, Serine/threonine-protein phosphatase 2A regulatory subunit B'
All UniProt accessions (16): A0A804CD06, A6PVN5, A6PVN6, A6PVN7, A6PVN8, B4DDQ6, B7ZBP7, B7ZBP9, B7ZBQ0, C9IZ76, Q15257, F6WIT2, H0Y562, H0Y6E5, Q5T949, Q68CR8
UniProt curated annotations — full annotation on UniProt →
Function. PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Acts as a regulatory subunit for serine/threonine-protein phosphatase 2A (PP2A). Modulates PP2A activity or substrate specificity, probably by inducing a conformational change in the catalytic subunit, a proposed direct target of the PPIase. Can reactivate inactive phosphatase PP2A-phosphatase methylesterase complexes (PP2A(i)) in presence of ATP and Mg(2+). Reversibly stimulates the variable phosphotyrosyl phosphatase activity of PP2A core heterodimer PP2A(D) in presence of ATP and Mg(2+) (in vitro). The phosphotyrosyl phosphatase activity is dependent of an ATPase activity of the PP2A(D):PPP2R4 complex. Is involved in apoptosis; the function appears to be independent from PP2A.
Subunit / interactions. Associates with PP2A heterodimeric core enzyme PP2A(D), composed of a 36 kDa catalytic subunit (subunit C) and a 65 kDa constant regulatory subunit (PR65 or subunit A). Interacts with the catalytic subunit PPP2CA (via C-terminus). Interacts with PPP2CB.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Widely expressed.
Disease relevance. Parkinson disease 25, autosomal recessive early-onset, with impaired intellectual development (PARK25) [MIM:620482] An autosomal recessive, early-onset form of Parkinson disease, a complex neurodegenerative disorder characterized by bradykinesia, resting tremor, muscular rigidity and postural instability, as well as by a clinically significant response to treatment with levodopa. The pathology involves the loss of dopaminergic neurons in the substantia nigra and the presence of Lewy bodies (intraneuronal accumulations of aggregated proteins), in surviving neurons in various areas of the brain. PARK25 is characterized by onset of parkinsonism in late childhood or adolescence, developmental delay and intellectual disability. Cognitive impairment is mild to moderate and non-progressive. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the PTPA-type PPIase family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q15257-1 | 2, Beta | yes |
| Q15257-2 | 1, Alpha | |
| Q15257-3 | 3, Delta | |
| Q15257-4 | 4, Epsilon |
RefSeq proteins (6): NP_001180326, NP_001258761, NP_066954, NP_821067, NP_821068, NP_821070 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004327 | Phstyr_phstse_ac | Family |
| IPR037218 | PTPA_sf | Homologous_superfamily |
| IPR043170 | PTPA_C_lid | Homologous_superfamily |
Pfam: PF03095
Catalyzed reactions (Rhea), 1 shown:
- [protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0) (RHEA:16237)
UniProt features (61 total): helix 20, mutagenesis site 9, binding site 8, sequence variant 5, strand 5, turn 4, splice variant 3, sequence conflict 3, initiator methionine 1, chain 1, modified residue 1, region of interest 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2IXM | X-RAY DIFFRACTION | 1.5 |
| 2G62 | X-RAY DIFFRACTION | 1.6 |
| 4NY3 | X-RAY DIFFRACTION | 1.8 |
| 2HV6 | X-RAY DIFFRACTION | 1.9 |
| 2HV7 | X-RAY DIFFRACTION | 2.5 |
| 4LAC | X-RAY DIFFRACTION | 2.82 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15257-F1 | 87.76 | 0.78 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 343; 183; 188; 189; 243; 249; 339; 342
Post-translational modifications (1): 2
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 185 | impairs atpase activity of the pp2a(d):ppp2r4 complex; no effect on interaction with the pp2a(d) complex. |
| 239 | impairs atpase activity of the pp2a(d):ppp2r4 complex; no effect on interaction with the pp2a(d) complex. |
| 240 | impairs atpase activity of the pp2a(d):ppp2r4 complex; no effect on interaction with the pp2a(d) complex. |
| 244 | impairs interaction with the pp2a(d) complex. |
| 305 | abolishes interaction with the pp2a(d) complex. |
| 316 | impairs interaction with the pp2a(d) complex. |
| 325 | abolishes interaction with the pp2a(d) complex. |
| 329 | abolishes interaction with the pp2a(d) complex. |
| 337 | impairs interaction with the pp2a(d) complex. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 248 (showing top):
CMYB_01, AAAYRNCTG_UNKNOWN, ONKEN_UVEAL_MELANOMA_UP, MORF_ATOX1, BLALOCK_ALZHEIMERS_DISEASE_UP, MORF_PPP2R4, LIAO_METASTASIS, GOBP_MITOTIC_CELL_CYCLE, MYOD_Q6, GOMF_SIGNALING_RECEPTOR_BINDING, DANG_BOUND_BY_MYC, KONDO_PROSTATE_CANCER_HCP_WITH_H3K27ME3, GOCC_CATION_CHANNEL_COMPLEX, GOCC_ATPASE_COMPLEX, GOCC_TRANSPORTER_COMPLEX
GO Biological Process (2): mitotic spindle organization (GO:0007052), positive regulation of apoptotic process (GO:0043065)
GO Molecular Function (14): peptidyl-prolyl cis-trans isomerase activity (GO:0003755), signaling receptor binding (GO:0005102), ATP binding (GO:0005524), protein tyrosine phosphatase activator activity (GO:0008160), protein phosphatase regulator activity (GO:0019888), phosphatase binding (GO:0019902), protein homodimerization activity (GO:0042803), metal ion binding (GO:0046872), protein phosphatase 2A binding (GO:0051721), nucleotide binding (GO:0000166), phosphoprotein phosphatase activity (GO:0004721), protein binding (GO:0005515), isomerase activity (GO:0016853), phosphatase activator activity (GO:0019211)
GO Cellular Component (7): protein phosphatase type 2A complex (GO:0000159), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), calcium channel complex (GO:0034704), extracellular exosome (GO:0070062), ATPase complex (GO:1904949)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| catalytic activity, acting on a protein | 2 |
| phosphatase regulator activity | 2 |
| protein phosphatase binding | 2 |
| phosphatase activity | 2 |
| cellular anatomical structure | 2 |
| mitotic cell cycle | 1 |
| spindle organization | 1 |
| microtubule cytoskeleton organization involved in mitosis | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| positive regulation of programmed cell death | 1 |
| cis-trans isomerase activity | 1 |
| protein binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| protein tyrosine phosphatase activity | 1 |
| protein phosphatase activator activity | 1 |
| phosphoprotein phosphatase activity | 1 |
| enzyme binding | 1 |
| identical protein binding | 1 |
| protein dimerization activity | 1 |
| cation binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| enzyme activator activity | 1 |
| protein serine/threonine phosphatase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cation channel complex | 1 |
| extracellular vesicle | 1 |
| catalytic complex | 1 |
Protein interactions and networks
STRING
1020 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PTPA | PPP2CA | P05323 | 920 |
| PTPA | PPP2R1A | P30153 | 899 |
| PTPA | LCMT1 | Q9UIC8 | 744 |
| PTPA | PPME1 | Q9Y570 | 726 |
| PTPA | AXIN1 | O15169 | 707 |
| PTPA | PPP2R5C | Q13362 | 705 |
| PTPA | CSNK1A1 | P48729 | 703 |
| PTPA | GSK3B | P49841 | 631 |
| PTPA | PPP2R3A | Q06190 | 627 |
| PTPA | PPP2R3B | Q9Y5P8 | 574 |
| PTPA | ABL1 | P00519 | 573 |
| PTPA | PPP2CB | P11082 | 540 |
| PTPA | PPP6C | O00743 | 530 |
| PTPA | PPP2R2A | P50409 | 528 |
| PTPA | TIPRL | O75663 | 516 |
IntAct
23 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PPP4R3A | PPP4C | psi-mi:“MI:0914”(association) | 0.920 |
| PTPA | PPP4C | psi-mi:“MI:0915”(physical association) | 0.620 |
| AMOT | PTPA | psi-mi:“MI:0915”(physical association) | 0.560 |
| PTPA | PPP4R2 | psi-mi:“MI:0915”(physical association) | 0.500 |
| PTPA | BRINP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| AMOT | PTPA | psi-mi:“MI:0915”(physical association) | 0.370 |
| PTPA | AMOT | psi-mi:“MI:0915”(physical association) | 0.370 |
| Bltp1 | DRC1 | psi-mi:“MI:0914”(association) | 0.350 |
| PTPA | TCP1 | psi-mi:“MI:0914”(association) | 0.350 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| PPP2CB | ENSA | psi-mi:“MI:0914”(association) | 0.350 |
| CT45A6 | AP3B1 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP4C | MID1 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP4R3A | GRK6 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP4R2 | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| ITM2C | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| MRPL49 | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| NPPB | ACOT7 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP4C | ISG15 | psi-mi:“MI:0914”(association) | 0.350 |
| UBAC1 | PTPA | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (155): PPP2R4 (Biochemical Activity), AMOT (Two-hybrid), PPP2R4 (Affinity Capture-RNA), PPP2R4 (Affinity Capture-RNA), PPP2R4 (Affinity Capture-Western), FAM110C (Affinity Capture-Western), TUBA1A (Affinity Capture-Western), PPP4R2 (Affinity Capture-MS), ANXA3 (Co-fractionation), PPP2R4 (Co-fractionation), PPP2R4 (Co-fractionation), BRINP1 (Affinity Capture-MS), PPP2R4 (Affinity Capture-MS), PPP2R4 (Affinity Capture-MS), PPP2R4 (Reconstituted Complex)
ESM2 similar proteins: A0A1S4BZI5, A0A1S4CB73, A2VE39, A2X8Q3, D2HRF1, D3Z6H8, E9Q4Z2, F1MF74, F1R777, F1RA39, F4JVN6, O00763, O23979, O48556, O82597, O82793, O94851, P0DMN7, P17707, P17708, P21216, P28918, P42898, P50243, P79888, P82185, Q04499, Q0DYB1, Q0J6P7, Q0WWQ1, Q15257, Q2QTL0, Q3B8I4, Q43187, Q5BJ48, Q5R981, Q5ZJT0, Q60HE5, Q641Y5, Q86U44
Diamond homologs: O36016, P0C153, P0CQ00, P0CQ01, P0CQ02, P0CQ03, P40454, P58389, Q12461, Q15257, Q28717, Q2KJ44, Q2UCL6, Q2UN27, Q4I0M9, Q4INW6, Q4P4W3, Q4PCR0, Q4WMU5, Q4WSA8, Q54WH6, Q55CJ3, Q59ST6, Q5ADP9, Q5B6C5, Q6BNW4, Q6BU97, Q6C712, Q6CFX5, Q6CKF0, Q6CYH1, Q6FK00, Q6FRQ9, Q753L9, Q75BY1, Q7S6M5, Q7SEF9, Q8SVB5, Q9P7H4, Q9VQQ0
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PTPA | down-regulates | AKT | dephosphorylation |
| PTPA | down-regulates | AKT1 | dephosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
30 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 4 |
| Likely benign | 4 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2576988 | NM_178000.3(PTPA):c.788T>G (p.Met263Arg) | Pathogenic |
| 2576989 | NM_178000.3(PTPA):c.407C>A (p.Ala136Asp) | Pathogenic |
SpliceAI
2165 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:129111628:CCAGG:C | donor_loss | 1.0000 |
| 9:129111630:AGG:A | donor_loss | 1.0000 |
| 9:129111631:GGTAA:G | donor_loss | 1.0000 |
| 9:129111632:G:GA | donor_loss | 1.0000 |
| 9:129120498:T:G | acceptor_gain | 1.0000 |
| 9:129120511:A:G | acceptor_gain | 1.0000 |
| 9:129123047:GGTA:G | acceptor_loss | 1.0000 |
| 9:129123048:GTAG:G | acceptor_loss | 1.0000 |
| 9:129123049:TAGG:T | acceptor_loss | 1.0000 |
| 9:129123050:A:AT | acceptor_loss | 1.0000 |
| 9:129123051:GGCAT:G | acceptor_gain | 1.0000 |
| 9:129131635:CACAG:C | donor_loss | 1.0000 |
| 9:129131636:ACAGG:A | donor_loss | 1.0000 |
| 9:129131637:CAGGT:C | donor_loss | 1.0000 |
| 9:129131638:AGGT:A | donor_loss | 1.0000 |
| 9:129131639:GGTA:G | donor_loss | 1.0000 |
| 9:129131640:GT:G | donor_loss | 1.0000 |
| 9:129131641:T:C | donor_loss | 1.0000 |
| 9:129134793:AG:A | acceptor_gain | 1.0000 |
| 9:129134794:GG:G | acceptor_gain | 1.0000 |
| 9:129134794:GGGC:G | acceptor_gain | 1.0000 |
| 9:129134893:CGG:C | donor_loss | 1.0000 |
| 9:129134894:GG:G | donor_loss | 1.0000 |
| 9:129134895:GTGAG:G | donor_loss | 1.0000 |
| 9:129136532:G:GT | donor_gain | 1.0000 |
| 9:129142442:CAG:C | acceptor_loss | 1.0000 |
| 9:129142443:A:AG | acceptor_gain | 1.0000 |
| 9:129142443:A:G | acceptor_loss | 1.0000 |
| 9:129142443:AGAT:A | acceptor_gain | 1.0000 |
| 9:129142444:G:GT | acceptor_gain | 1.0000 |
AlphaMissense
2132 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:129120596:T:A | W39R | 1.000 |
| 9:129120596:T:C | W39R | 1.000 |
| 9:129120597:G:C | W39S | 1.000 |
| 9:129129066:T:A | F135I | 1.000 |
| 9:129129066:T:C | F135L | 1.000 |
| 9:129129067:T:C | F135S | 1.000 |
| 9:129129067:T:G | F135C | 1.000 |
| 9:129129068:T:A | F135L | 1.000 |
| 9:129129068:T:G | F135L | 1.000 |
| 9:129129070:G:A | G136E | 1.000 |
| 9:129131609:G:A | G179R | 1.000 |
| 9:129131609:G:C | G179R | 1.000 |
| 9:129131609:G:T | G179W | 1.000 |
| 9:129131610:G:A | G179E | 1.000 |
| 9:129131610:G:T | G179V | 1.000 |
| 9:129131621:C:A | R183S | 1.000 |
| 9:129131621:C:G | R183G | 1.000 |
| 9:129131622:G:C | R183P | 1.000 |
| 9:129131627:G:C | D185H | 1.000 |
| 9:129131628:A:C | D185A | 1.000 |
| 9:129131628:A:T | D185V | 1.000 |
| 9:129131629:C:A | D185E | 1.000 |
| 9:129131629:C:G | D185E | 1.000 |
| 9:129131633:G:C | G187R | 1.000 |
| 9:129131633:G:T | G187C | 1.000 |
| 9:129131634:G:A | G187D | 1.000 |
| 9:129131634:G:T | G187V | 1.000 |
| 9:129131639:G:A | G189R | 1.000 |
| 9:129131639:G:C | G189R | 1.000 |
| 9:129131639:G:T | G189W | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000015998 (9:129110230 CT>C), RS1000067347 (9:129121371 A>C,G), RS1000087902 (9:129121262 G>A), RS1000177380 (9:129126280 G>A), RS1000294266 (9:129132789 C>G,T), RS1000470535 (9:129132051 C>G,T), RS1000504033 (9:129121616 G>A), RS1000509287 (9:129116945 G>A), RS1000510347 (9:129125199 T>C), RS1000525200 (9:129130950 G>A), RS1000653793 (9:129146255 G>A), RS1000693913 (9:129122590 G>A), RS1000704542 (9:129146112 G>A,C,T), RS1000737854 (9:129116239 C>T), RS1000790462 (9:129116648 G>A)
Disease associations
OMIM: gene MIM:600756 | disease phenotypes: MIM:620482
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Parkinson disease | Moderate | Autosomal dominant |
| Parkinson disease 25, autosomal recessive early-onset, with impaired intellectual development | Moderate | Autosomal recessive |
Mondo (2): Parkinson disease 25, autosomal recessive early-onset, with impaired intellectual development (MONDO:0957576), Parkinson disease (MONDO:0005180)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
12 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001971_4 | Hypersomnia (HLA-DQB1*06:02 negative) | 3.000000e-06 |
| GCST006879_1 | Blood metabolite levels | 1.000000e-09 |
| GCST006879_18 | Blood metabolite levels | 3.000000e-43 |
| GCST006879_19 | Blood metabolite levels | 4.000000e-83 |
| GCST006879_2 | Blood metabolite levels | 2.000000e-12 |
| GCST006879_20 | Blood metabolite levels | 5.000000e-12 |
| GCST006879_21 | Blood metabolite levels | 2.000000e-22 |
| GCST006879_22 | Blood metabolite levels | 2.000000e-20 |
| GCST007191_1 | Hypersomnia (HLA-DQB1*06:02 negative) | 8.000000e-09 |
| GCST009733_142 | Urinary metabolite levels in chronic kidney disease | 6.000000e-30 |
| GCST009735_9 | Urinary metabolite modules (eigenmetabolites) in chronic kidney disease | 2.000000e-14 |
| GCST010143_23 | Meat-related diet | 6.000000e-11 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005116 | urinary metabolite measurement |
| EFO:0008111 | diet measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D010300 | Parkinson Disease | C10.228.140.079.862.500; C10.228.662.600.400; C10.574.928.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2505 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
8 measured of 13 human assays (13 total across all organisms); most potent 8 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Calyculinamide A (18) | IC50 | 5 nM |
| C1/C34-Calyculin A (15) | IC50 | 9 nM |
| Des-N-methylcalyculin A (20) | IC50 | 11 nM |
| Calyculin A 21-acetate (13) | IC50 | 13 nM |
| Hemicalyculin A (5) | IC50 | 14 nM |
| Calyculin C (24) | IC50 | 29 nM |
| Calyculin J (14) | IC50 | 105 nM |
| Calyculin A (4) | IC50 | 112 nM |
ChEMBL bioactivities
3 potent at pChembl≥5 of 8 total, top 3 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.30 | IC50 | 500 | nM | CHEMBL40248 |
| 5.40 | IC50 | 4000 | nM | CHEMBL295239 |
| 5.03 | IC50 | 9400 | nM | TAUTOMYCIN |
PubChem BioAssay actives
16 with measured affinity, of 49 total; 13 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [(2R,3R,7R,8S)-2-[(1S,3S,5R,7E,9E,11E,13E)-14-cyano-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyltetradeca-7,9,11,13-tetraenyl]-9-[(E)-3-[2-[4-[[(2S,4S)-4-(dimethylamino)-2,3-dihydroxy-5-methoxypentanoyl]amino]butan-2-yl]-1,3-oxazol-4-yl]prop-2-enyl]-7-hydroxy-4,4,8-trimethyl-1,10-dioxaspiro[4.5]decan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0010 | uM |
| [(2R,3R,7R,8S)-2-[(1S,3S,5R,7E,9E,11E,13E)-14-cyano-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyltetradeca-7,9,11,13-tetraenyl]-9-[(E)-3-cyanoprop-2-enyl]-7-hydroxy-4,4,8-trimethyl-1,10-dioxaspiro[4.5]decan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0010 | uM |
| [(2R,3R,7R,8S)-2-[(1S,3S,5R,7E,9E,11E,13E)-14-cyano-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyltetradeca-7,9,11,13-tetraenyl]-9-[(E)-3-[2-[4-[[(2S,4S)-2,3-dihydroxy-5-methoxy-4-(methylamino)pentanoyl]amino]butan-2-yl]-1,3-oxazol-4-yl]prop-2-enyl]-7-hydroxy-4,4,8-trimethyl-1,10-dioxaspiro[4.5]decan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0010 | uM |
| [(2R,3R,7R,8S)-2-[(1S,3S,5R,7E,9E,11E,13E)-14-cyano-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyltetradeca-7,9,11,13-tetraenyl]-7-hydroxy-9-[(E)-3-[2-[4-[(2-hydroxyacetyl)amino]butan-2-yl]-1,3-oxazol-4-yl]prop-2-enyl]-4,4,8-trimethyl-1,10-dioxaspiro[4.5]decan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0011 | uM |
| [(2R,3R,7R,8S)-2-[(1S,3S,5R,7E,9E,11E,13E)-15-amino-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyl-15-oxopentadeca-7,9,11,13-tetraenyl]-9-[(E)-3-[2-[4-[[(2S,4S)-4-(dimethylamino)-2,3-dihydroxy-5-methoxypentanoyl]amino]butan-2-yl]-1,3-oxazol-4-yl]prop-2-enyl]-7-hydroxy-4,4,8-trimethyl-1,10-dioxaspiro[4.5]decan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0015 | uM |
| [(2R,3R,7R,8R)-2-[(1S,3S,5R,7E,9E,11E,13E)-14-cyano-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyltetradeca-7,9,11,13-tetraenyl]-9-[(E)-3-[2-[4-[[(2S,4S)-4-(dimethylamino)-2,3-dihydroxy-5-methoxypentanoyl]amino]butan-2-yl]-1,3-oxazol-4-yl]prop-2-enyl]-4,4,8-trimethyl-3-phosphonooxy-1,10-dioxaspiro[4.5]decan-7-yl] acetate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0021 | uM |
| [(2R,3R,7R,8S)-2-[(1S,3S,5R,7E,9E,11E,13E)-14-cyano-3,5-dihydroxy-1-methoxy-4,6,8,9,13-pentamethyltetradeca-7,9,11,13-tetraenyl]-9-[(E)-3-[2-[4-[[(2S,4S)-4-(dimethylamino)-2,3-dihydroxy-5-methoxypentanoyl]amino]pentan-2-yl]-1,3-oxazol-4-yl]prop-2-enyl]-7-hydroxy-4,4,8-trimethyl-1,10-dioxaspiro[4.5]decan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0026 | uM |
| [(2R,3R)-2-[(1S,3S)-4-[(3S,4R)-4-bromo-5-[(2E,4E,6E)-7-cyano-6-methylhepta-2,4,6-trien-2-yl]-3,5-dimethyloxolan-2-yl]-3-hydroxy-1-methoxypentyl]-5-[(E)-4-[2-[4-[[(2S,4S)-4-(dimethylamino)-2,3-dihydroxy-5-methoxypentanoyl]amino]butan-2-yl]-1,3-oxazol-4-yl]but-3-enoxy]-5-[(2S)-2-hydroxybutyl]-4,4-dimethyloxolan-3-yl] dihydrogen phosphate | 1799476: Inhibition Assay from Article 10.1016/S1074-5521(02)00118-7: “Insight into binding of calyculin A to protein phosphatase 1: isolation of hemicalyculin a and chemical transformation of calyculin A.” | ic50 | 0.0200 | uM |
| [(3R,4S,5R,8S,9S,12R)-12-[(2S,3S,6R,8S,9R)-3,9-dimethyl-8-[(3S)-3-methyl-4-oxopentyl]-1,7-dioxaspiro[5.5]undecan-2-yl]-5,9-dihydroxy-4-methoxy-2,8-dimethyl-7-oxotridecan-3-yl] (3S)-3-hydroxy-3-(4-methyl-2,5-dioxofuran-3-yl)propanoate | 164525: Inhibition of protein phosphatase 2A (PP2A) was determined by standard phosphorylase a inhibition assay | ic50 | 0.5000 | uM |
| (E,4R)-6-[(3R,4S,5R,8S,9S,12R)-12-[(2S,3S,6R,8S,9R)-3,9-dimethyl-8-[(3S)-3-methyl-4-oxopentyl]-1,7-dioxaspiro[5.5]undecan-2-yl]-5,9-dihydroxy-4-methoxy-2,8-dimethyl-7-oxotridecan-3-yl]oxy-4-hydroxy-2-methyl-6-oxohex-2-enoic acid | 164525: Inhibition of protein phosphatase 2A (PP2A) was determined by standard phosphorylase a inhibition assay | ic50 | 4.0000 | uM |
| [(3R,4R,5R,8S,9S,12R)-12-[(2S,3S,6R,8S,9R)-3,9-dimethyl-8-[(3S)-3-methyl-4-oxopentyl]-1,7-dioxaspiro[5.5]undecan-2-yl]-5,9-dihydroxy-4-methoxy-2,8-dimethyl-7-oxotridecan-3-yl] (3R)-3-hydroxy-3-(4-methyl-2,5-dioxofuran-3-yl)propanoate | 164525: Inhibition of protein phosphatase 2A (PP2A) was determined by standard phosphorylase a inhibition assay | ic50 | 9.4000 | uM |
| (2S,5S)-2-[(4aR,6R,8aS)-6-[(2S,5R)-5-bromo-2,6,6-trimethyloxan-2-yl]-8a-methyl-4a,6,7,8-tetrahydro-4H-pyrano[3,2-b]pyran-2-yl]-5-[(2R,5R)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]pentane-1,2,5-triol | 164527: Inhibitory activity against protein phosphatase (PP2A) using fluorescein diphosphate as substrate | ic50 | 10.0000 | uM |
| (1S,3S)-4-[(2R,4aS,6R,8aR)-2-[(2S,5R)-5-bromo-2,6,6-trimethyloxan-2-yl]-4a-methyl-3,4,6,7,8,8a-hexahydro-2H-pyrano[3,2-b]pyran-6-yl]-1-[(2R,5R)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]pent-4-ene-1,3-diol | 164527: Inhibitory activity against protein phosphatase (PP2A) using fluorescein diphosphate as substrate | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Acetaminophen | decreases expression | 3 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 2 |
| Smoke | decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects expression | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| ginger extract | decreases reaction, increases abundance, increases expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | increases expression, decreases reaction, increases abundance | 1 |
| beta-lapachone | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| bisphenol B | increases expression | 1 |
| bisphenol S | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Vehicle Emissions | affects expression, increases abundance | 1 |
| Azacitidine | increases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Bucladesine | affects cotreatment, increases expression | 1 |
| Doxorubicin | increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Oils, Volatile | decreases reaction, increases abundance, increases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Quercetin | decreases expression | 1 |
| Selenium | affects cotreatment, increases expression | 1 |
| Thiram | decreases expression | 1 |
ChEMBL screening assays
17 unique, capped per target: 16 binding, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1067751 | Binding | Inhibition of PTPalpha expressed in Escherichia coli BL21 (DE3) after 10 mins by spectrophotometry | Novel thiophene derivatives as PTP1B inhibitors with selectivity and cellular activity. — Bioorg Med Chem |
| CHEMBL4626314 | ADMET | Inhibition of PTPA (unknown origin) expressed in Escherichia coli BL21 using p-nitrophenyl phosphate as substrate measured after 30 mins by UV-vis spectrophotometric method | Highly Potent and Selective N-Aryl Oxamic Acid-Based Inhibitors for Mycobacterium tuberculosis Protein Tyrosine Phosphatase B. — J Med Chem |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1Q9 | Abcam K-562 PTPA KO | Cancer cell line | Female |
| CVCL_D2LV | Abcam Raji PTPA KO | Cancer cell line | Male |
| CVCL_TG03 | HAP1 PPP2R4 (-) 1 | Cancer cell line | Male |
| CVCL_TG04 | HAP1 PPP2R4 (-) 2 | Cancer cell line | Male |
| CVCL_WQ43 | Abcam Jurkat PTPA KO | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00030979 | PHASE4 | COMPLETED | Donepezil to Treat Dementia in Parkinson’s Disease |
| NCT00043849 | PHASE4 | COMPLETED | Treatment of Agitation/Psychosis in Dementia/Parkinsonism (TAP/DAP) |
| NCT00095810 | PHASE4 | COMPLETED | Aripiprazole in Patients With Psychosis Associated With Parkinson’s Disease |
| NCT00125567 | PHASE4 | COMPLETED | Stalevo in Early Wearing-Off Patients |
| NCT00143026 | PHASE4 | COMPLETED | Study to Compare the Effect of Treatment With Carbidopa/Levodopa/Entacapone on the Quality of Life of Patients With Parkinson’s Disease. This Study is Not Recruiting in the United States |
| NCT00144300 | PHASE4 | COMPLETED | Ophthalmologic Safety Study of Pramipexole Immediate Release (IR) Versus Ropinirole in Early Parkinson’s Disease (PD) Patients |
| NCT00153972 | PHASE4 | COMPLETED | Dopamine Turnover Rate as Surrogate Parameter for Diagnosis of Early Parkinson’s Disease |
| NCT00174239 | PHASE4 | TERMINATED | Study Of Cabaser and Sinemet CR For The Treatment Of Nighttime Symptoms Associated With Parkinson’s Disease. |
| NCT00215904 | PHASE4 | COMPLETED | D-serine Adjuvant Treatment for Parkinson’s Disease |
| NCT00247247 | PHASE4 | COMPLETED | Comtess® Versus Cabaseril® as Add-on to Levodopa in the Treatment of Parkinsonian Patients Suffering From Wearing- Off. |
| NCT00272688 | PHASE4 | COMPLETED | Continuous Delivery of Levodopa in Patients With Advanced Idiopathic Parkinsons Disease - Cost-benefit |
| NCT00297778 | PHASE4 | COMPLETED | Pramipexole Versus Placebo in Parkinson’s Disease (PD) Patients With Depressive Symptoms |
| NCT00304161 | PHASE4 | COMPLETED | Effectiveness of Antidepressant Treatment for Depression in People With Parkinson’s Disease |
| NCT00307450 | PHASE4 | COMPLETED | Efficacy and Safety of Levetiracetam Versus Placebo on Levodopa-induced Dyskinesias in Advanced Parkinson’s Disease |
| NCT00321854 | PHASE4 | COMPLETED | Study of (Mirapex) Pramipexole for the Early Treatment of Parkinsons Disease (PD) |
| NCT00354133 | PHASE4 | UNKNOWN | Controlled Trial With Deep Brain Stimulation in Patients With Early Parkinson’s Disease |
| NCT00373087 | PHASE4 | COMPLETED | COMT Polymorphism and Entacapone Efficacy |
| NCT00391898 | PHASE4 | COMPLETED | Efficacy of Levodopa/Carbidopa/Entacapone vs Levodopa/Carbidopa in Parkinson’s Disease Patients With Early Wearing-off |
| NCT00399477 | PHASE4 | COMPLETED | A Non-Blinded Study Demonstrating the Effectiveness and Safety of Azilect Alone or in Combination Therapy in Parkinson’s Disease |
| NCT00402233 | PHASE4 | COMPLETED | A Randomized, Double-blind, Active (Pramipexole 0.5 mg Tid) and Placebo Controlled, Study of Pramipexole Given 0.5 mg and 0.75 mg Bid Over 12-week Treatment in Early Parkinson’s Disease (PD) Patients |
| NCT00437125 | PHASE4 | COMPLETED | Study on the Tolerability of Duloxetine in Depressed Patients With Parkinson’s Disease |
| NCT00443872 | PHASE4 | COMPLETED | Efficacy of Orally Disintegrating Selegiline in Parkinson’s Patients Experiencing Adverse Effects With Dopamine Agonists |
| NCT00455143 | PHASE4 | TERMINATED | Cognitive Protection - Dexmedetomidine and Cognitive Reserve |
| NCT00462007 | PHASE4 | COMPLETED | Study to Evaluate Initiation of Stalevo in Early Wearing-off |
| NCT00462254 | PHASE4 | TERMINATED | Ramelteon (ROZEREM) in the Treatment of Sleep Disturbances Associated With Parkinson’s Disease |
| NCT00477802 | PHASE4 | TERMINATED | Botulinum Toxin Type A (Botox) in the Management of Levodopa-Induced Peak-Dose Dyskinesias in Parkinson’s Disease |
| NCT00485069 | PHASE4 | COMPLETED | REQUIP (Ropinirole Hydrochloride) IR Long-Term Phase 4 Study |
| NCT00489255 | PHASE4 | COMPLETED | Safety/Efficacy of Tigan® to Control Nausea/Vomiting Experienced During Apokyn® Initiation and Treatment |
| NCT00526630 | PHASE4 | COMPLETED | Methylphenidate for the Treatment of Gait Impairment in Parkinson’s Disease |
| NCT00561678 | PHASE4 | COMPLETED | Perioperative Cognitive Function - Dexmedetomidine and Cognitive Reserve |
| NCT00571285 | PHASE4 | TERMINATED | Clinical Effects of Vitamin D Repletion in Patients With Parkinson’s Disease |
| NCT00584025 | PHASE4 | WITHDRAWN | Keppra IV for the Treatment of Motor Fluctuations in Parkinson’s Disease |
| NCT00584090 | PHASE4 | WITHDRAWN | Solifenacin Succinate (VESIcare) for the Treatment of Urinary Incontinence in Parkinson’s Disease |
| NCT00590122 | PHASE4 | COMPLETED | Parcopa Versus Carbidopa-levodopa in a Single Dose Cross-over Comparison Study |
| NCT00594464 | PHASE4 | COMPLETED | A Trial of Neupro® (Rotigotine Transdermal Patch) in Patients With Parkinson’s Disease Undergoing Surgery |
| NCT00601978 | PHASE4 | WITHDRAWN | Carbidopa/Levodopa Versus Carbidopa/Levodopa/Entacapone on Markers of Event Related Potentials (ERPs) in Patients With Idiopathic Parkinson’s Disease (PD) and End-of-dose Wearing Off |
| NCT00632762 | PHASE4 | COMPLETED | Long-Term Effects of Amantadine in Parkinsonian (AMANDYSK) |
| NCT00640159 | PHASE4 | COMPLETED | Selegiline to Zelapar Switch Study in Parkinson Disease Patients |
| NCT00642356 | PHASE4 | TERMINATED | Carbidopa/Levodopa/Entacapone Versus Immediate Release (IR) Carbidopa/Levodopa on Non-motor Symptoms in Patients With Idiopathic Parkinson’s Disease and Demonstrating Non-motor Symptoms of Wearing Off |
| NCT00646204 | PHASE4 | COMPLETED | Namenda (Memantine) for Non-motor Symptoms in Parkinson’s Disease |
Related Atlas pages
- Associated diseases: Parkinson disease, Parkinson disease 25, autosomal recessive early-onset, with impaired intellectual development
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hypersomnia, Parkinson disease 25, autosomal recessive early-onset, with impaired intellectual development