PTPN3
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Also known as PTPH1
Summary
PTPN3 (protein tyrosine phosphatase non-receptor type 3, HGNC:9655) is a protein-coding gene on chromosome 9q31.3, encoding Tyrosine-protein phosphatase non-receptor type 3 (P26045). May act at junctions between the membrane and the cytoskeleton.
The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This protein contains a C-terminal PTP domain and an N-terminal domain homologous to the band 4.1 superfamily of cytoskeletal-associated proteins. P97, a cell cycle regulator involved in a variety of membrane related functions, has been shown to be a substrate of this PTP. This PTP was also found to interact with, and be regulated by adaptor protein 14-3-3 beta. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 5774 — RefSeq curated summary.
At a glance
- Gene–disease (curated): schizophrenia (No Known Disease Relationship, GenCC)
- GWAS associations: 36
- Clinical variants (ClinVar): 175 total
- Phenotypes (HPO): 8
- Druggable target: yes
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
- MANE Select transcript:
NM_002829
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9655 |
| Approved symbol | PTPN3 |
| Name | protein tyrosine phosphatase non-receptor type 3 |
| Location | 9q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PTPH1 |
| Ensembl gene | ENSG00000070159 |
| Ensembl biotype | protein_coding |
| OMIM | 176877 |
| Entrez | 5774 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 12 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000262539, ENST00000374541, ENST00000412145, ENST00000446349, ENST00000447271, ENST00000497739, ENST00000865410, ENST00000865411, ENST00000865412, ENST00000865413, ENST00000865414, ENST00000865415, ENST00000865416, ENST00000865417
RefSeq mRNA: 6 — MANE Select: NM_002829
NM_001145368, NM_001145369, NM_001145370, NM_001145371, NM_001145372, NM_002829
CCDS: CCDS48000, CCDS48001, CCDS6776
Canonical transcript exons
ENST00000374541 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000806055 | 109420424 | 109420600 |
| ENSE00000806056 | 109422718 | 109422852 |
| ENSE00000983477 | 109428621 | 109428684 |
| ENSE00000983478 | 109426950 | 109427122 |
| ENSE00001090538 | 109389233 | 109389379 |
| ENSE00001090539 | 109406462 | 109406618 |
| ENSE00001090542 | 109383423 | 109383551 |
| ENSE00001090545 | 109404448 | 109404608 |
| ENSE00001463784 | 109375700 | 109379633 |
| ENSE00001463801 | 109498219 | 109498307 |
| ENSE00001606103 | 109438114 | 109438234 |
| ENSE00001625396 | 109445240 | 109445292 |
| ENSE00001689765 | 109454496 | 109454574 |
| ENSE00001747223 | 109436883 | 109436970 |
| ENSE00001750132 | 109433073 | 109433161 |
| ENSE00001788195 | 109448811 | 109448855 |
| ENSE00003497921 | 109410229 | 109410415 |
| ENSE00003516468 | 109408321 | 109408377 |
| ENSE00003528171 | 109409999 | 109410076 |
| ENSE00003580705 | 109391138 | 109391199 |
| ENSE00003604086 | 109391471 | 109391561 |
| ENSE00003716139 | 109382302 | 109382447 |
| ENSE00003720438 | 109457173 | 109457215 |
| ENSE00003730229 | 109381652 | 109381787 |
| ENSE00003737404 | 109463297 | 109463451 |
| ENSE00003748211 | 109457292 | 109457399 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 96.95.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.4441 / max 178.5957, expressed in 1024 samples.
FANTOM5 promoters (16 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 101904 | 5.4412 | 994 |
| 101902 | 0.2672 | 144 |
| 101905 | 0.2025 | 116 |
| 101898 | 0.1394 | 16 |
| 101896 | 0.0838 | 12 |
| 101903 | 0.0735 | 21 |
| 101897 | 0.0662 | 7 |
| 101895 | 0.0374 | 8 |
| 101900 | 0.0297 | 12 |
| 101906 | 0.0276 | 11 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oocyte | CL:0000023 | 96.95 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 96.24 | gold quality |
| secondary oocyte | CL:0000655 | 96.20 | gold quality |
| triceps brachii | UBERON:0001509 | 95.58 | gold quality |
| gluteal muscle | UBERON:0002000 | 95.32 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 95.26 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.15 | gold quality |
| diaphragm | UBERON:0001103 | 95.04 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 94.77 | gold quality |
| gastrocnemius | UBERON:0001388 | 93.91 | gold quality |
| biceps brachii | UBERON:0001507 | 93.82 | gold quality |
| apex of heart | UBERON:0002098 | 93.77 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 93.38 | gold quality |
| vastus lateralis | UBERON:0001379 | 93.30 | gold quality |
| muscle organ | UBERON:0001630 | 92.99 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 92.98 | gold quality |
| muscle of leg | UBERON:0001383 | 92.90 | gold quality |
| right lobe of liver | UBERON:0001114 | 92.81 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 92.80 | gold quality |
| quadriceps femoris | UBERON:0001377 | 92.72 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.34 | gold quality |
| amniotic fluid | UBERON:0000173 | 92.17 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 91.75 | gold quality |
| corpus epididymis | UBERON:0004359 | 91.70 | gold quality |
| upper arm skin | UBERON:0004263 | 91.32 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 91.07 | gold quality |
| islet of Langerhans | UBERON:0000006 | 91.05 | gold quality |
| deltoid | UBERON:0001476 | 91.02 | silver quality |
| heart left ventricle | UBERON:0002084 | 90.10 | gold quality |
| skin of leg | UBERON:0001511 | 89.91 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 13.19 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
233 targeting PTPN3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
Literature-anchored findings (GeneRIF, showing 30)
- regulates TACE (tnf-alpha convertase} (PMID:12207026)
- first reported demonstration that protein tyrosine phosphatase H1(PTPH1) is capable of interacting with and dephosphorylating T cell receptor zeta subunit (PMID:14672952)
- PTPH1 binds to the PDZ-domain binding motif of the cardiac voltage-gated sodium channel Na(v)1 and regulates the activity of Na(v)1. (PMID:16930557)
- Degradation of PTPN3 by HPV-16 E6 requires E6AP, the proteasome, and an interaction between the carboxy terminus of E6 and the PDZ domain of PTPN3. (PMID:17166906)
- phosphatase activity and FERM domain of PTPN3 are essential for its suppression of HBV gene expression. (PMID:17588219)
- PTP-H1 has a role in modulating GHR signaling and systemic growth through insulin-like growth factor 1 secretion (PMID:17921143)
- Data suggest that reducing the level of PTPH1 may contribute to the oncogenic activity of high-risk genital E6 proteins. (PMID:17947517)
- PTPH1 plays a role in Ras-dependent malignant growth by a mechanism depending on its p38gamma-binding activity. Ras increases p38gamma and PTPH1 expression and there is a coupling of increased p38gamma and PTPH1 protein expression in colon cancer. (PMID:20332238)
- PTPH1 stimulated breast cancer growth through regulating vitamin D receptor expression. PTPH1 was overexpressed in primary breast cancer and levels of its protein expression positively correlated with clinical metastasis. (PMID:21119599)
- The fusion transcript of ALK and PTPN3 identified resulted from translocation of a part of ALK gene into the third intron of PTPN3. Analysis of the transcript sequence indicates that no protein with any enzymatic activity is produced. (PMID:22334442)
- p38gamma Mitogen-activated protein kinase signals through phosphorylating its phosphatase PTPH1 in regulating ras protein oncogenesis and stress response. (PMID:22730326)
- These studies thus identified PTPH1 as a novel ER phosphatase and further demonstrate a therapeutic potential of enhancing breast cancer sensitivity to antiestrogens through dephosphorylating ER by PTPH1. (PMID:24227889)
- Activating mutations in and high expression levels of PTPN3 were associated with tumor recurrence in cholangiocarcinoma. (PMID:24503127)
- Results indicate that protein tyrosine phosphatase non-receptor type 3 (PTPN3) may act as a tumor suppressor in lung cancer through its modulation of epidermal growth factor receptor (EGFR) signaling. (PMID:25263444)
- analysis of how allosteric regulation of p38gamma and PTPN3 involves a PDZ domain-modulated complex formation (PMID:25314968)
- PTPN3 promotes tumorigenicity, stemness and drug resistance in ovarian cancer. (PMID:27833130)
- PTPH1 is upregulated in breast cancer from Indian population; its expression is correlative with ER, and PR status. The 2 kb region upstream of PTPH1 gene harbored CpG sites within, and was ubiquitously methylated in breast cancer. (PMID:30189107)
- High expression of PTPN3 was significantly associated with unfavorable prognosis of GBM. Moreover, in GBM cell lines, PTPN3 promoted cell proliferation and invasion, and the PTP common inhibitor pervanadate suppressed GBM proliferation and invasion. (PMID:30348936)
- E6 oncoprotein of the betaHPV type 8-mediated targeting of PTPH1 might result in higher level of EGFR and enhanced keratinocyte proliferation. (PMID:30875834)
- Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein. (PMID:31092861)
- Study reports that PTPN3 suppresses liver cancer progression through positively regulating TGF-b signaling. Furthermore, the recurrent L232R mutation in liver cancer disables its role in enhancing TGF-beta signaling and abolishes its tumor-suppressive function. (PMID:31304624)
- findings reveal a novel mechanism by which reversible tyrosine phosphorylation of DAAM1 by Src and PTPN3 regulates actin dynamics and lung cancer invasivenes (PMID:31406243)
- PTPN3 suppressed the proliferation of perihilar cholangiocarcinoma by inhibiting AKT phosphorylation and arresting cell cycle. (PMID:31706106)
- Low PTPN3 expression is associated with gastric cancer angiogenesis. (PMID:31972307)
- PTPN3 Inhibits the Growth and Metastasis of Clear Cell Renal Cell Carcinoma via Inhibition of PI3K/AKT Signaling. (PMID:32169891)
- NFkappaB and TGFbeta contribute to the expression of PTPN3 in activated human lymphocytes. (PMID:33137650)
- Molecular basis of the interaction of the human tyrosine phosphatase PTPN3 with the hepatitis B virus core protein. (PMID:33441627)
- PTPN3 Could Betae a Therapeutic Target of Pancreatic Cancer. (PMID:35641270)
- Identification and verification of PTPN3 as a novel biomarker in predicting cancer prognosis, immunity, and immunotherapeutic efficacy. (PMID:38173048)
- Inhibition of PTPN3 Expressed in Activated Lymphocytes Enhances the Antitumor Effects of Anti-PD-1 Therapy in Head and Neck Cancer, Especially in Hypoxic Environments. (PMID:38297883)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ptpn3 | ENSDARG00000055784 |
| mus_musculus | Ptpn3 | ENSMUSG00000038764 |
| rattus_norvegicus | Ptpn3 | ENSRNOG00000011425 |
Paralogs (35): PTPRN (ENSG00000054356), PTPRU (ENSG00000060656), PTPN21 (ENSG00000070778), PTPN18 (ENSG00000072135), PTPN23 (ENSG00000076201), PTPRH (ENSG00000080031), PTPRC (ENSG00000081237), PTPN4 (ENSG00000088179), PTPRS (ENSG00000105426), PTPRZ1 (ENSG00000106278), PTPN5 (ENSG00000110786), PTPN6 (ENSG00000111679), PTPRB (ENSG00000127329), PTPN12 (ENSG00000127947), PTPRE (ENSG00000132334), PTPRA (ENSG00000132670), PTPN22 (ENSG00000134242), PTPRF (ENSG00000142949), PTPN7 (ENSG00000143851), PTPRG (ENSG00000144724), PTPRJ (ENSG00000149177), PTPRO (ENSG00000151490), PTPN14 (ENSG00000152104), PTPRK (ENSG00000152894), PTPRR (ENSG00000153233), PTPRD (ENSG00000153707), PTPRN2 (ENSG00000155093), PTPN13 (ENSG00000163629), PTPN9 (ENSG00000169410), PTPRM (ENSG00000173482), PTPN2 (ENSG00000175354), PTPN11 (ENSG00000179295), PTPRT (ENSG00000196090), PTPN1 (ENSG00000196396), PTPN20 (ENSG00000204179)
Protein
Protein identifiers
Tyrosine-protein phosphatase non-receptor type 3 — P26045 (reviewed: P26045)
Alternative names: Protein-tyrosine phosphatase H1
All UniProt accessions (2): P26045, J3KN34
UniProt curated annotations — full annotation on UniProt →
Function. May act at junctions between the membrane and the cytoskeleton. Possesses tyrosine phosphatase activity.
Subcellular location. Cell membrane. Cytoplasm. Cytoskeleton.
Similarity. Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P26045-1 | 1 | yes |
| P26045-2 | 2 | |
| P26045-3 | 3 |
RefSeq proteins (6): NP_001138840, NP_001138841, NP_001138842, NP_001138843, NP_001138844, NP_002820* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000242 | PTP_cat | Domain |
| IPR000299 | FERM_domain | Domain |
| IPR000387 | Tyr_Pase_dom | Domain |
| IPR001478 | PDZ | Domain |
| IPR003595 | Tyr_Pase_cat | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR012151 | Tyr_Pase_non-rcpt_typ-3/4 | Family |
| IPR014352 | FERM/acyl-CoA-bd_prot_sf | Homologous_superfamily |
| IPR016130 | Tyr_Pase_AS | Active_site |
| IPR018979 | FERM_N | Domain |
| IPR018980 | FERM_PH-like_C | Domain |
| IPR019747 | FERM_CS | Conserved_site |
| IPR019748 | FERM_central | Domain |
| IPR019749 | Band_41_domain | Domain |
| IPR029021 | Prot-tyrosine_phosphatase-like | Homologous_superfamily |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR035963 | FERM_2 | Homologous_superfamily |
| IPR036034 | PDZ_sf | Homologous_superfamily |
| IPR041783 | PTPN3/4_FERM_C | Domain |
Pfam: PF00102, PF00373, PF00595, PF09379, PF09380
Enzyme classification (BRENDA):
- EC 3.1.3.48 — protein-tyrosine-phosphatase (BRENDA: 59 organisms, 501 substrates, 1326 inhibitors, 270 Km, 165 kcat entries)
Substrate kinetics (BRENDA)
70 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 4-NITROPHENYL PHOSPHATE | 0.0008–148 | 84 |
| 6,8-DIFLUORO-4-METHYLUMBELLIFERYL PHOSPHATE | 0.0039–0.862 | 27 |
| P-NITROPHENYL PHOSPHATE | 0.0024–10 | 20 |
| DADEPYLIPQQG | 0.0003–0.1 | 12 |
| PHOSPHOTYROSINE | 0.012–30 | 11 |
| LYSOZYME | 0.0003–0.012 | 5 |
| MYELIN BASIC PROTEIN | 0.0001–0.022 | 5 |
| ACETYL-DADEPY-NH2 | 0.0228–0.219 | 4 |
| ACETYL-DADEPYL-NH2 | 1.1–97.5 | 4 |
| 4,6,8-TRIMETHYL-2-OXO-2H-CHROMEN-7-YL DIHYDROGEN | 0.02–0.156 | 3 |
| SASASPYSASA | 0.53–2.3 | 3 |
| 1-NAPHTHYL PHOSPHATE | 1.19–1.88 | 2 |
| 3,6-FLUORESCEIN DIPHOSPHATE | 15–19 | 2 |
| 4-METHYLUMBELLIFERYL PHOSPHATE | 0.953–2.41 | 2 |
| BOVINE SERUM ALBUMIN | 0.0001–0.0003 | 2 |
Catalyzed reactions (Rhea), 1 shown:
- O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate (RHEA:10684)
UniProt features (65 total): strand 22, helix 13, modified residue 6, sequence variant 5, domain 3, binding site 3, turn 3, compositionally biased region 3, splice variant 2, region of interest 2, chain 1, sequence conflict 1, active site 1
Structure
Experimental structures (PDB)
13 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4RI5 | X-RAY DIFFRACTION | 1.26 |
| 2B49 | X-RAY DIFFRACTION | 1.54 |
| 4RHG | X-RAY DIFFRACTION | 1.58 |
| 4RI4 | X-RAY DIFFRACTION | 1.6 |
| 4RH9 | X-RAY DIFFRACTION | 1.6 |
| 4RH5 | X-RAY DIFFRACTION | 1.6 |
| 8CQY | X-RAY DIFFRACTION | 1.7 |
| 4S0G | X-RAY DIFFRACTION | 1.72 |
| 4QUN | X-RAY DIFFRACTION | 1.86 |
| 6T36 | X-RAY DIFFRACTION | 1.86 |
| 8OEP | X-RAY DIFFRACTION | 1.87 |
| 6HKS | X-RAY DIFFRACTION | 2.19 |
| 4QUM | X-RAY DIFFRACTION | 2.52 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P26045-F1 | 73.85 | 0.42 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 842 (phosphocysteine intermediate)
Ligand- & substrate-binding residues (3): 811; 842–848; 886
Post-translational modifications (6): 357, 359, 367, 376, 381, 425
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-182971 | EGFR downregulation |
| R-HSA-5675221 | Negative regulation of MAPK pathway |
MSigDB gene sets: 279 (showing top):
GOBP_MEMBRANE_DEPOLARIZATION, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, GOBP_REGULATION_OF_ERBB_SIGNALING_PATHWAY, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_SODIUM_ION_TRANSMEMBRANE_TRANSPORT, GOBP_NEGATIVE_REGULATION_OF_ERBB_SIGNALING_PATHWAY, GOBP_MEMBRANE_DEPOLARIZATION_DURING_ACTION_POTENTIAL, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_REGULATION_OF_MEMBRANE_DEPOLARIZATION, BONCI_TARGETS_OF_MIR15A_AND_MIR16_1, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS, GOBP_MONOATOMIC_CATION_TRANSPORT, HERNANDEZ_ABERRANT_MITOSIS_BY_DOCETACEL_2NM_UP, ATGTTAA_MIR302C, GOBP_REGULATION_OF_SODIUM_ION_TRANSPORT
GO Biological Process (8): MAPK cascade (GO:0000165), negative regulation of epidermal growth factor receptor signaling pathway (GO:0042059), negative regulation of mitotic cell cycle (GO:0045930), negative regulation of membrane protein ectodomain proteolysis (GO:0051045), regulation of membrane depolarization during action potential (GO:0098902), regulation of sodium ion transmembrane transport (GO:1902305), protein dephosphorylation (GO:0006470), dephosphorylation (GO:0016311)
GO Molecular Function (8): phosphotyrosine residue binding (GO:0001784), protein tyrosine phosphatase activity (GO:0004725), cytoskeletal protein binding (GO:0008092), sodium channel regulator activity (GO:0017080), ATPase binding (GO:0051117), phosphoprotein phosphatase activity (GO:0004721), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (6): cytoplasm (GO:0005737), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), cytoplasmic side of plasma membrane (GO:0009898), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Signaling by EGFR | 1 |
| RAF/MAP kinase cascade | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| intracellular signaling cassette | 1 |
| epidermal growth factor receptor signaling pathway | 1 |
| regulation of epidermal growth factor receptor signaling pathway | 1 |
| negative regulation of ERBB signaling pathway | 1 |
| mitotic cell cycle | 1 |
| regulation of mitotic cell cycle | 1 |
| negative regulation of cell cycle | 1 |
| membrane protein ectodomain proteolysis | 1 |
| negative regulation of protein catabolic process | 1 |
| negative regulation of proteolysis | 1 |
| regulation of membrane protein ectodomain proteolysis | 1 |
| regulation of membrane depolarization | 1 |
| membrane depolarization during action potential | 1 |
| regulation of sodium ion transport | 1 |
| sodium ion transmembrane transport | 1 |
| regulation of monoatomic cation transmembrane transport | 1 |
| dephosphorylation | 1 |
| protein modification process | 1 |
| phosphate-containing compound metabolic process | 1 |
| protein phosphorylated amino acid binding | 1 |
| phosphoprotein phosphatase activity | 1 |
| protein binding | 1 |
| sodium channel activity | 1 |
| ion channel regulator activity | 1 |
| enzyme binding | 1 |
| phosphatase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| plasma membrane | 1 |
| cytoplasmic side of membrane | 1 |
Protein interactions and networks
STRING
1094 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PTPN3 | PTS | Q03393 | 852 |
| PTPN3 | DLG1 | Q12959 | 656 |
| PTPN3 | VCP | P55072 | 574 |
| PTPN3 | UBE3A | P78355 | 554 |
| PTPN3 | BET1L | Q9NYM9 | 545 |
| PTPN3 | VCPIP1 | Q96JH7 | 524 |
| PTPN3 | NPLOC4 | Q8TAT6 | 523 |
| PTPN3 | IGDCC3 | Q8IVU1 | 522 |
| PTPN3 | MPDZ | O75970 | 504 |
| PTPN3 | NHERF2 | Q15599 | 502 |
| PTPN3 | TP53 | P04637 | 490 |
| PTPN3 | DTNB | O60941 | 485 |
| PTPN3 | ALK | Q9UM73 | 483 |
| PTPN3 | SCN5A | Q14524 | 482 |
| PTPN3 | DMD | P11532 | 464 |
IntAct
503 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PTPN3 | YWHAQ | psi-mi:“MI:2364”(proximity) | 0.850 |
| PTPN3 | VANGL1 | psi-mi:“MI:0915”(physical association) | 0.750 |
| VANGL1 | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.750 |
| PTPN3 | LMO1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PTPN3 | AKR1C1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| WDR6 | PTPN3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AKR1C1 | PTPN3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| LMO1 | PTPN3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PTPN3 | WDR6 | psi-mi:“MI:0915”(physical association) | 0.720 |
| SCN5A | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.670 |
| PTPN3 | MCC | psi-mi:“MI:0914”(association) | 0.660 |
| PTPN3 | MCC | psi-mi:“MI:0915”(physical association) | 0.660 |
| MCC | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.660 |
| PTPN3 | GHR | psi-mi:“MI:0407”(direct interaction) | 0.650 |
| PTPN3 | GHR | psi-mi:“MI:0203”(dephosphorylation reaction) | 0.650 |
| PTPN3 | GHR | psi-mi:“MI:0915”(physical association) | 0.650 |
| EPS15 | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.650 |
| PTPN3 | EPS15 | psi-mi:“MI:0915”(physical association) | 0.650 |
| PTPN3 | EPS15 | psi-mi:“MI:0407”(direct interaction) | 0.650 |
| PTPN3 | EPS15 | psi-mi:“MI:0203”(dephosphorylation reaction) | 0.650 |
| PTPN3 | MAPK12 | psi-mi:“MI:0203”(dephosphorylation reaction) | 0.620 |
| MAPK12 | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
BioGRID (208): PTPN3 (Two-hybrid), PTPN3 (Two-hybrid), WDR6 (Two-hybrid), DIP2A (Two-hybrid), ZCCHC10 (Two-hybrid), NXT2 (Two-hybrid), PTPN3 (Two-hybrid), PTPN3 (Two-hybrid), ACOT8 (Affinity Capture-MS), KCTD3 (Affinity Capture-MS), SHKBP1 (Affinity Capture-MS), SLC1A5 (Affinity Capture-MS), SRRM2 (Affinity Capture-MS), VANGL1 (Affinity Capture-MS), YWHAB (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JXT6, A0JMF6, A0JMK5, A2ALK8, A2BGG1, A6QLT4, A7MB43, G5ED68, O13819, O14830, P26045, P33402, P51432, Q09M05, Q13496, Q13613, Q15111, Q3USB7, Q4KWH5, Q4R6N0, Q4U2V3, Q52KU6, Q5EB32, Q5F452, Q5R6F6, Q5R9S3, Q5U581, Q62688, Q6AXQ4, Q6NU08, Q6TEL0, Q6XPS3, Q7TPM9, Q7ZXF1, Q8K394, Q8NCE2, Q8VE11, Q8VEL2, Q96EF0, Q96MI9
Diamond homologs: A0A6I8TCE0, A1L1L3, A2ALK8, A4IFW2, B0V2N1, B0X4T2, B1AUH1, B2GV87, B2RU80, B3DK56, B9EKR1, E9Q0N2, E9Q612, F1NWE3, G5EC24, G5EGJ9, H2KZM6, O02695, O08617, O13016, O35239, O55082, P06800, P16620, P17706, P18031, P18052, P18433, P20417, P23467, P23468, P23469, P23470, P23471, P26045, P28191, P29074, P29350, P29351, P29352
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PTPN3 | “down-regulates activity” | VCP | dephosphorylation |
| PTPN3 | “up-regulates activity” | ESR1 | dephosphorylation |
| MAP3K7 | unknown | PTPN3 | phosphorylation |
| PTPN3 | “down-regulates activity” | GHR | dephosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 136 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 6 | 49.6× | 3e-07 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 6 | 43.8× | 3e-07 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 6 | 43.8× | 3e-07 |
| Activation of BH3-only proteins | 6 | 32.4× | 2e-06 |
| RHO GTPases activate PKNs | 6 | 20.7× | 3e-05 |
| Intrinsic Pathway for Apoptosis | 6 | 19.1× | 4e-05 |
| RND2 GTPase cycle | 6 | 16.9× | 6e-05 |
| RND1 GTPase cycle | 5 | 14.4× | 6e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein targeting | 5 | 14.3× | 8e-03 |
| transport across blood-brain barrier | 7 | 9.8× | 7e-03 |
| intracellular protein localization | 8 | 6.5× | 8e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — PAAD.
Clinical variants and AI predictions
ClinVar
175 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 138 |
| Likely benign | 6 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4499 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:109379559:A:C | donor_gain | 1.0000 |
| 9:109381646:ACT:A | donor_loss | 1.0000 |
| 9:109381647:CTC:C | donor_loss | 1.0000 |
| 9:109381647:CTCA:C | donor_gain | 1.0000 |
| 9:109381648:TCACT:T | donor_loss | 1.0000 |
| 9:109381649:CACTG:C | donor_loss | 1.0000 |
| 9:109381650:A:AC | donor_gain | 1.0000 |
| 9:109381651:C:CG | donor_gain | 1.0000 |
| 9:109381651:CTG:C | donor_gain | 1.0000 |
| 9:109381651:CTGA:C | donor_gain | 1.0000 |
| 9:109381651:CTGAT:C | donor_gain | 1.0000 |
| 9:109381783:CAGCA:C | acceptor_gain | 1.0000 |
| 9:109381785:GCA:G | acceptor_gain | 1.0000 |
| 9:109381786:CA:C | acceptor_gain | 1.0000 |
| 9:109381786:CAC:C | acceptor_gain | 1.0000 |
| 9:109381788:C:CC | acceptor_gain | 1.0000 |
| 9:109381789:T:C | acceptor_loss | 1.0000 |
| 9:109382296:CCATA:C | donor_loss | 1.0000 |
| 9:109382297:CATAC:C | donor_loss | 1.0000 |
| 9:109382298:ATACC:A | donor_loss | 1.0000 |
| 9:109382299:TACCT:T | donor_loss | 1.0000 |
| 9:109382300:A:C | donor_loss | 1.0000 |
| 9:109382301:C:CA | donor_loss | 1.0000 |
| 9:109382443:CCGGT:C | acceptor_gain | 1.0000 |
| 9:109382444:CGGT:C | acceptor_gain | 1.0000 |
| 9:109382444:CGGTC:C | acceptor_gain | 1.0000 |
| 9:109382446:GTC:G | acceptor_loss | 1.0000 |
| 9:109382447:TC:T | acceptor_loss | 1.0000 |
| 9:109383417:GCTCA:G | donor_loss | 1.0000 |
| 9:109383418:CTCAC:C | donor_loss | 1.0000 |
AlphaMissense
6018 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:109382403:C:A | W809C | 1.000 |
| 9:109382403:C:G | W809C | 1.000 |
| 9:109382405:A:G | W809R | 1.000 |
| 9:109382405:A:T | W809R | 1.000 |
| 9:109383546:T:A | K753N | 1.000 |
| 9:109383546:T:G | K753N | 1.000 |
| 9:109383547:T:A | K753I | 1.000 |
| 9:109406479:A:G | L592P | 1.000 |
| 9:109406485:A:G | L590P | 1.000 |
| 9:109408377:C:G | G527R | 1.000 |
| 9:109408377:C:T | G527R | 1.000 |
| 9:109410009:A:G | F523S | 1.000 |
| 9:109410012:C:T | G522E | 1.000 |
| 9:109379609:C:G | A897P | 0.999 |
| 9:109379619:A:C | F893L | 0.999 |
| 9:109379619:A:T | F893L | 0.999 |
| 9:109379621:A:G | F893L | 0.999 |
| 9:109379627:A:C | Y891D | 0.999 |
| 9:109381675:G:T | R881S | 0.999 |
| 9:109381683:C:G | R878P | 0.999 |
| 9:109381767:C:T | G850D | 0.999 |
| 9:109381768:C:G | G850R | 0.999 |
| 9:109381774:G:C | R848G | 0.999 |
| 9:109381776:C:T | G847D | 0.999 |
| 9:109381777:C:G | G847R | 0.999 |
| 9:109381782:C:T | G845E | 0.999 |
| 9:109381783:C:G | G845R | 0.999 |
| 9:109381783:C:T | G845R | 0.999 |
| 9:109381785:G:T | A844D | 0.999 |
| 9:109382304:G:C | C842W | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000067520 (9:109399262 A>G,T), RS1000070057 (9:109424100 G>A,T), RS1000125312 (9:109428555 G>A), RS1000126508 (9:109467796 G>A), RS1000127083 (9:109438909 T>C), RS1000141272 (9:109479010 T>A,G), RS1000152166 (9:109434166 C>G,T), RS1000185234 (9:109434448 C>G), RS1000209887 (9:109514046 G>C), RS1000236433 (9:109473543 C>A,G,T), RS1000251839 (9:109451790 C>G), RS1000261713 (9:109432846 T>A), RS1000262387 (9:109514319 G>A,T), RS1000300708 (9:109462596 G>A), RS1000303494 (9:109520768 G>A)
Disease associations
OMIM: gene MIM:176877 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| schizophrenia | No Known Disease Relationship | Unknown |
Mondo (2): prostate cancer (MONDO:0008315), schizophrenia (MONDO:0005090)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
8 total (8 of 8 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000952 | Jaundice |
| HP:0000989 | Pruritus |
| HP:0001945 | Fever |
| HP:0002027 | Abdominal pain |
| HP:0002039 | Anorexia |
| HP:0011985 | Acholic stools |
| HP:0012378 | Fatigue |
| HP:0100574 | Biliary tract neoplasm |
GWAS associations
36 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003182_3 | Staphylococcus aureus nasal carriage (persistent) | 8.000000e-07 |
| GCST004379_3 | Red blood cell density in sickle cell anemia | 1.000000e-06 |
| GCST004409_1 | HIV-associated neurocognitive disorder | 1.000000e-07 |
| GCST004410_2 | HIV-associated neurocognitive disorder (asymptomatic neurocogntive impairment) | 5.000000e-06 |
| GCST004411_1 | HIV-associated neurocognitive disorder (mild neurocognitive disorder or asymptomatic neurocognitive impairment) | 2.000000e-07 |
| GCST005173_78 | Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes | 9.000000e-06 |
| GCST005175_19 | Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes | 7.000000e-06 |
| GCST005988_9 | Serum albumin levels | 2.000000e-09 |
| GCST007740_22 | Iris color (a* coordinate) | 9.000000e-06 |
| GCST007741_42 | Iris color (b* coordinate) | 9.000000e-07 |
| GCST007876_110 | Estimated glomerular filtration rate | 1.000000e-08 |
| GCST010244_206 | Triglyceride levels | 1.000000e-08 |
| GCST010796_151 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-09 |
| GCST010796_152 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-09 |
| GCST010796_153 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010796_154 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-09 |
| GCST010796_155 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-10 |
| GCST010796_156 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-10 |
| GCST010796_157 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_158 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-10 |
| GCST010796_159 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_160 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-09 |
| GCST010796_161 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010796_162 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_163 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_164 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010796_165 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_167 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_168 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_169 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007757 | persistent Staphylococcus aureus carrier status |
| EFO:0007948 | HIV-associated neurocognitive disorder |
| EFO:0007983 | asymptomatic neurocognitive impairment |
| EFO:0007982 | mild neurocognitive disorder |
| EFO:0004723 | coronary artery calcification |
| EFO:0009764 | eye colour measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2396509 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
1 measured of 2 human assays (2 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 6-hydroxy-3-iodo-1-methyl-2-[3-[[2-oxo-2-(4-thiophen-3-ylanilino)acetyl]amino]phenyl]indole-5-carboxylic acid | IC50 | 2900 nM | US-9522881: Hydroxyindole carboxylic acid based inhibitors for oncogenic Src homology-2 domain containing protein tyrosine phosphatase-2 (SHP2) |
ChEMBL bioactivities
3 potent at pChembl≥5 of 5 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.97 | IC50 | 1070 | nM | CHEMBL3319356 |
| 5.80 | IC50 | 1600 | nM | CHEMBL2396718 |
PubChem BioAssay actives
2 with measured affinity, of 8 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 6-hydroxy-3-iodo-1-methyl-2-[3-[[2-oxo-2-(4-thiophen-3-ylanilino)acetyl]amino]phenyl]indole-5-carboxylic acid | 1182543: Inhibition of PTPH1 (unknown origin) | ic50 | 1.0700 | uM |
| 3-[2-(3-chlorophenyl)ethynyl]-6-hydroxy-2-[4-[2-oxo-2-(propylamino)ethoxy]phenyl]-1-benzofuran-5-carboxylic acid | 755772: Inhibition of recombinant PTPH1 (unknown origin) using pNPP as substrate by spectrophotometric analysis | ic50 | 1.6000 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 8 |
| Tretinoin | affects expression, decreases expression, increases expression | 4 |
| Acetaminophen | decreases expression, increases expression | 3 |
| Benzo(a)pyrene | affects methylation, increases expression | 2 |
| Calcitriol | decreases expression, increases expression | 2 |
| Cyclosporine | increases expression, increases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| N(6)-(delta(2)-isopentenyl)adenine | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| 2-butenal | decreases expression | 1 |
| hydroxyhydroquinone | decreases expression, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| 4-aminobenzhydrazide | decreases reaction, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| tamibarotene | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| pirfenidone | affects binding, decreases reaction, increases reaction, decreases phosphorylation | 1 |
| entinostat | increases expression | 1 |
| cotylenin A | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| clothianidin | increases expression | 1 |
| belinostat | decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
ChEMBL screening assays
7 unique, capped per target: 7 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2401194 | Binding | Inhibition of recombinant PTPH1 (unknown origin) using pNPP as substrate by spectrophotometric analysis | A potent and selective small-molecule inhibitor for the lymphoid-specific tyrosine phosphatase (LYP), a target associated with autoimmune diseases. — J Med Chem |
Cellosaurus cell lines
6 cell lines: 6 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_1543 | NCI-H2228 | Cancer cell line | Female |
| CVCL_4V13 | NCI-H2228-Luc | Cancer cell line | Female |
| CVCL_E3I6 | HyCyte NCI-H2228-Luc | Cancer cell line | Female |
| CVCL_E6DB | NCI-H2228-ARY | Cancer cell line | Female |
| CVCL_TH61 | HAP1 PTPN3 (-) 1 | Cancer cell line | Male |
| CVCL_TH62 | HAP1 PTPN3 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | PHASE4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | PHASE4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | PHASE4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | PHASE4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
Related Atlas pages
- Associated diseases: schizophrenia