PTPRC-AS1

Summary

PTPRC-AS1 (PTPRC antisense RNA 1, HGNC:40483) is a long non-coding RNA gene on chromosome 1q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40483
Approved symbol	PTPRC-AS1
Name	PTPRC antisense RNA 1
Location	1q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261573
Ensembl biotype	lncRNA
Entrez	139281668
RNAcentral	URS0002A1C7F1 — lncRNA, 420 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000566394, ENST00000807039

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000566394 — 3 exons

Exon	Start	End
ENSE00002607642	198657553	198657821
ENSE00002609028	198660623	198660706
ENSE00002615356	198666999	198667061

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 95.25.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.25	gold quality
granulocyte	CL:0000094	79.48	gold quality
monocyte	CL:0000576	76.40	gold quality
leukocyte	CL:0000738	75.81	gold quality
bone marrow	UBERON:0002371	75.46	gold quality
bone marrow cell	CL:0002092	72.85	gold quality
blood	UBERON:0000178	71.83	gold quality
tonsil	UBERON:0002372	68.03	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.25	gold quality
colonic epithelium	UBERON:0000397	66.34	silver quality
calcaneal tendon	UBERON:0003701	64.66	gold quality
liver	UBERON:0002107	64.01	gold quality
lymph node	UBERON:0000029	60.18	gold quality
corpus callosum	UBERON:0002336	60.06	gold quality
gall bladder	UBERON:0002110	59.65	gold quality
vermiform appendix	UBERON:0001154	58.85	gold quality
adrenal tissue	UBERON:0018303	57.00	gold quality
adult mammalian kidney	UBERON:0000082	56.14	gold quality
right lobe of liver	UBERON:0001114	54.54	gold quality
lung	UBERON:0002048	54.38	gold quality
cortex of kidney	UBERON:0001225	54.31	gold quality
multicellular organism	UBERON:0000468	52.77	gold quality
prefrontal cortex	UBERON:0000451	52.57	gold quality
kidney	UBERON:0002113	52.50	gold quality
stomach	UBERON:0000945	52.39	gold quality
endometrium	UBERON:0001295	52.38	gold quality
placenta	UBERON:0001987	51.94	silver quality
upper lobe of left lung	UBERON:0008952	51.76	gold quality
colon	UBERON:0001155	49.98	gold quality
omental fat pad	UBERON:0010414	49.62	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-HCAD-30	no	47.13
E-ANND-3	no	0.37

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.