PTPRE-AS1

Summary

PTPRE-AS1 (PTPRE antisense RNA 1, HGNC:58380) is a long non-coding RNA gene on chromosome 10q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58380
Approved symbol	PTPRE-AS1
Name	PTPRE antisense RNA 1
Location	10q26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232259
Ensembl biotype	lncRNA
Entrez	124902557

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000420845

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420845 — 2 exons

Exon	Start	End
ENSE00001628244	127929376	127929681
ENSE00001746104	127934076	127934517

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 82.19.

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.19	gold quality
sural nerve	UBERON:0015488	72.06	gold quality
monocyte	CL:0000576	68.07	gold quality
leukocyte	CL:0000738	67.48	gold quality
bone marrow cell	CL:0002092	67.11	silver quality
colonic epithelium	UBERON:0000397	64.88	silver quality
corpus callosum	UBERON:0002336	64.64	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.30	gold quality
skeletal muscle tissue	UBERON:0001134	62.56	gold quality
bone marrow	UBERON:0002371	59.63	gold quality
blood	UBERON:0000178	58.96	gold quality
left testis	UBERON:0004533	58.64	gold quality
testis	UBERON:0000473	58.54	gold quality
duodenum	UBERON:0002114	57.35	gold quality
adrenal tissue	UBERON:0018303	57.35	gold quality
stromal cell of endometrium	CL:0002255	56.90	gold quality
right testis	UBERON:0004534	56.88	gold quality
mucosa of transverse colon	UBERON:0004991	55.50	gold quality
granulocyte	CL:0000094	54.76	gold quality
calcaneal tendon	UBERON:0003701	54.07	gold quality
prefrontal cortex	UBERON:0000451	53.90	gold quality
lung	UBERON:0002048	53.41	gold quality
lymph node	UBERON:0000029	53.22	gold quality
urinary bladder	UBERON:0001255	52.70	gold quality
gall bladder	UBERON:0002110	52.52	gold quality
adrenal gland	UBERON:0002369	52.44	gold quality
vermiform appendix	UBERON:0001154	52.23	gold quality
upper lobe of left lung	UBERON:0008952	52.18	gold quality
tonsil	UBERON:0002372	51.98	silver quality
right adrenal gland	UBERON:0001233	51.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.