PTPRJ-AS1

Summary

PTPRJ-AS1 (PTPRJ antisense RNA 1, HGNC:50634) is a long non-coding RNA gene on chromosome 11p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50634
Approved symbol	PTPRJ-AS1
Name	PTPRJ antisense RNA 1
Location	11p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254879
Ensembl biotype	lncRNA
Entrez	104326192
RNAcentral	URS000017EEFE — lncRNA, 301 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000533964

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000533964 — 2 exons

Exon	Start	End
ENSE00002143648	48015827	48015855
ENSE00002158825	48014406	48014677

Expression profiles

Bgee: expression breadth broad, 88 present calls, max score 95.93.

Top tissues by expression

88 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.93	gold quality
testis	UBERON:0000473	88.68	gold quality
sural nerve	UBERON:0015488	81.12	gold quality
bone marrow cell	CL:0002092	81.09	gold quality
bone marrow	UBERON:0002371	73.08	gold quality
cortex of kidney	UBERON:0001225	71.61	gold quality
corpus callosum	UBERON:0002336	71.41	gold quality
blood	UBERON:0000178	70.41	gold quality
monocyte	CL:0000576	69.10	gold quality
leukocyte	CL:0000738	69.09	gold quality
uterine cervix	UBERON:0000002	66.68	silver quality
tonsil	UBERON:0002372	66.45	gold quality
kidney	UBERON:0002113	66.12	gold quality
liver	UBERON:0002107	63.91	gold quality
islet of Langerhans	UBERON:0000006	62.73	gold quality
urinary bladder	UBERON:0001255	60.05	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.02	gold quality
adult mammalian kidney	UBERON:0000082	58.41	gold quality
thoracic mammary gland	UBERON:0005200	58.16	gold quality
stomach	UBERON:0000945	57.42	gold quality
prefrontal cortex	UBERON:0000451	57.39	gold quality
muscle of leg	UBERON:0001383	57.17	gold quality
calcaneal tendon	UBERON:0003701	56.97	gold quality
multicellular organism	UBERON:0000468	56.45	gold quality
gastrocnemius	UBERON:0001388	56.40	gold quality
endometrium	UBERON:0001295	55.88	gold quality
myometrium	UBERON:0001296	55.61	gold quality
pancreas	UBERON:0001264	54.97	gold quality
fundus of stomach	UBERON:0001160	53.96	gold quality
intestine	UBERON:0000160	53.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.88

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.