PTTG1

gene
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Also known as PTTGHPTTGEAP1securinECRAR

Summary

PTTG1 (PTTG1 regulator of sister chromatid separation, securin, HGNC:9690) is a protein-coding gene on chromosome 5q33.3, encoding Securin (O95997). Regulatory protein, which plays a central role in chromosome stability, in the p53/TP53 pathway, and DNA repair. It is a selective cancer dependency (DepMap: 30.0% of cell lines).

The encoded protein is a homolog of yeast securin proteins, which prevent separins from promoting sister chromatid separation. It is an anaphase-promoting complex (APC) substrate that associates with a separin until activation of the APC. The gene product has transforming activity in vitro and tumorigenic activity in vivo, and the gene is highly expressed in various tumors. The gene product contains 2 PXXP motifs, which are required for its transforming and tumorigenic activities, as well as for its stimulation of basic fibroblast growth factor expression. It also contains a destruction box (D box) that is required for its degradation by the APC. The acidic C-terminal region of the encoded protein can act as a transactivation domain. The gene product is mainly a cytosolic protein, although it partially localizes in the nucleus. Three transcript variants encoding the same protein have been found for this gene.

Source: NCBI Gene 9232 — RefSeq curated summary.

At a glance

  • GWAS associations: 9
  • Clinical variants (ClinVar): 32 total
  • Cancer dependency (DepMap): dependent in 30.0% of screened cell lines
  • Transcription factor: yes — 16 downstream targets (CollecTRI)
  • MANE Select transcript: NM_004219

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9690
Approved symbolPTTG1
NamePTTG1 regulator of sister chromatid separation, securin
Location5q33.3
Locus typegene with protein product
StatusApproved
AliasesPTTG, HPTTG, EAP1, securin, ECRAR
Ensembl geneENSG00000164611
Ensembl biotypeprotein_coding
OMIM604147
Entrez9232

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 17 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined

ENST00000352433, ENST00000393964, ENST00000517480, ENST00000519287, ENST00000520452, ENST00000523659, ENST00000524244, ENST00000922252, ENST00000922253, ENST00000922254, ENST00000922255, ENST00000922256, ENST00000922257, ENST00000922258, ENST00000922259, ENST00000922260, ENST00000922261, ENST00000922262, ENST00000922263, ENST00000922264

RefSeq mRNA: 3 — MANE Select: NM_004219 NM_001282382, NM_001282383, NM_004219

CCDS: CCDS4353

Canonical transcript exons

ENST00000352433 — 6 exons

ExonStartEnd
ENSE00001209726160421855160421891
ENSE00003458569160422302160422403
ENSE00003480460160427715160427873
ENSE00003492340160422709160422893
ENSE00003504727160424237160424330
ENSE00003674570160428602160428739

Expression profiles

Bgee: expression breadth ubiquitous, 246 present calls, max score 99.97.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 63.7525 / max 1587.5824, expressed in 1791 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
5989553.11091768
5989410.40941566
598960.139056
598970.093138

Top tissues by expression

289 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
oocyteCL:000002399.97gold quality
secondary oocyteCL:000065599.97gold quality
ventricular zoneUBERON:000305399.36gold quality
left testisUBERON:000453398.50gold quality
ganglionic eminenceUBERON:000402398.44gold quality
tongue squamous epitheliumUBERON:000691998.36gold quality
embryoUBERON:000092298.31gold quality
right testisUBERON:000453498.23gold quality
spermCL:000001998.12gold quality
male germ cellCL:000001597.95gold quality
gingival epitheliumUBERON:000194997.62gold quality
adult organismUBERON:000702397.27gold quality
testisUBERON:000047397.23gold quality
trabecular bone tissueUBERON:000248396.79gold quality
gingivaUBERON:000182896.77gold quality
bone marrowUBERON:000237195.38gold quality
esophagus mucosaUBERON:000246994.71gold quality
lower esophagus mucosaUBERON:003583494.50gold quality
mucosa of transverse colonUBERON:000499194.27gold quality
hair follicleUBERON:000207394.22gold quality
endometrium epitheliumUBERON:000481194.15gold quality
oral cavityUBERON:000016793.77gold quality
rectumUBERON:000105293.73gold quality
squamous epitheliumUBERON:000691493.67gold quality
cervix squamous epitheliumUBERON:000692293.26gold quality
cartilage tissueUBERON:000241893.09gold quality
ileal mucosaUBERON:000033192.97gold quality
left lobe of thyroid glandUBERON:000112092.92gold quality
thyroid glandUBERON:000204692.85gold quality
thymusUBERON:000237092.85gold quality

Single-cell (SCXA)

Detected in 47 experiment(s), a significant marker in 42.

ExperimentMarker?Max mean expression
E-MTAB-10485yes3449.34
E-MTAB-8894yes2459.55
E-MTAB-9435yes2324.99
E-CURD-112yes2294.76
E-HCAD-56yes2229.56
E-HCAD-5yes2223.75
E-MTAB-11121yes1914.23
E-MTAB-10662yes1432.16
E-HCAD-10yes1401.54
E-GEOD-81383yes1392.38
E-GEOD-114530yes1388.79
E-MTAB-9906yes1283.12
E-MTAB-6505yes1262.00
E-HCAD-6yes1213.72
E-MTAB-6108yes1146.91

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

16 targets.

TargetRegulation
CCNB1Activation
CDC42Activation
CDK1Activation
DOCK1Activation
FGF2Unknown
ID3Activation
KDRActivation
LGALS1Activation
MYCActivation
PTTG1Repression
PTTG1IPActivation
RAC1Activation
RHOAActivation
S100A4Activation
TIMP2Repression
VEGFAActivation

Upstream regulators (CollecTRI, top): CTNNB1, CUX1, E2F1, FOXL2, KLF10, KLF6, NKX2-1, POU2F1, PTTG1, RUNX2, SP1, SP3, STAT3, STAT5A, TCF7L2, TFDP1, TP53, YY1

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 30.0% of screened cell lines.

Literature-anchored findings (GeneRIF, showing 40)

  • Data suggest that separase is required for sister chromatid separation during mitosis in human cells, and that securin inhibits separase by blocking the access of substrates to the active site of separase. (PMID:12194817)
  • findings implicate altered VEGF and KDR signaling in pituitary tumorigenesis; PTTG stimulation of FGF-2 and VEGF expression in the presence of up-regulated growth factor receptors may account for angiogenic growth and progression of human pituitary tumors (PMID:12213878)
  • Tumor tissue expressed a significantly higher level of PTTG1 mRNA than the corresponding normal tissue. PTTG1 mRNA expression was significantly higher in tumors with higher pathological stage or more extensive lymph node metastasis (PMID:12324572)
  • the oncogenic effect of increased expression of securin may result from modulation of p53 functions (PMID:12355087)
  • Data suggest that securin is a p53 target gene and may play a role in p53-mediated cellular response to DNA damage. (PMID:12403781)
  • the involvement of hpttg in lymphomagenesis (PMID:12444553)
  • PTTG1-mediated signaling alters the hormonal phenotype in pituitary (PMID:12554778)
  • The relationship between pituitary tumour transforming gene (PTTG) expression and in vitro growth hormone and vascular endothelial growth factor (VEGF) secretion from human pituitary adenomas. (PMID:12590639)
  • pituitary tumor transforming gene and fibroblast growth factor-2 expression are potential prognostic markers (and perhaps therapeutic targets) for differentiated thyroid cancer (PMID:12727994)
  • A potential role for PTTG in modulating cell proliferation and FGF-2 expression in the fetal brain. (PMID:12958169)
  • Failure of PTTG degradation or enhanced PTTG accumulation, as a consequence of overexpression, inhibits mitosis progression and chromosome segregation but does not directly affect cytokinesis, resulting in aneuploidy. (PMID:12960092)
  • Results do not support a major role of hSecurin in the development of aneuploidy in myeloid leukaemias. However, high expression of hSecurin may be of pathogenetic relevance in a subset of patients. (PMID:14671639)
  • Overexpression of hPTTG inhibits the cell growth due to different mechanisms, which are p21WAF1/CIP1 -dependent and -independent. (PMID:14709851)
  • PTTG1 expression is enhanced in metastatic lymph nodes in comparison to that in primary carcinomas and may contribute to lymph node metastases in gastric carcinoma (PMID:14966902)
  • Results suggest that human securin has a novel role in cell cycle arrest after exposure to UV light or ionizing radiation. (PMID:15024062)
  • higher PTTG expression in astrocytoma than normal astrocytes and PTTG is involved in glioma cell growth. (PMID:15178645)
  • Clinical studies reveal that PTTG-binding factor, fibroblast growth factor 2, and vascular endothelial growth factor are elevated in pituitary tumors, and mostly correlate with PTTG levels, also confirming the PTTG role in angiogenesis. Review. (PMID:15281346)
  • As a target gene of beta-catenin/TCF pathway, PTTG may play an important role in tumorigenesis of human esophageal squamous cell carcinoma. (PMID:15514942)
  • PXXP structure and phosphorylation are likely to exert independent and critical influences upon PTTG’s diverse actions in vitro (PMID:15591026)
  • Demonstration of the importance of PTTG1 in human tumorigenesis. (PMID:15649325)
  • PTTG-1 is up-regulated in human uterine leiomyomas and that the positive feedback loop between PTTG-1 and basic fibroblast growth factor may be pivotal in the growth of leiomyoma cells. (PMID:15769981)
  • Abundant cytoplasmic and nuclear securin expression was demonstrated in all 90 breast tumors. (PMID:15846392)
  • density map at a resolution of 25 A of negatively stained separase-securin complex (PMID:15880121)
  • PTTG may be an important gene in the mutator phenotype development in thyroid cancer (PMID:15897900)
  • insulin and IGF-1 regulate the expression of PTTG in MCF-7 cells primarily through the activation of PI3K/AKT cascade (PMID:15922332)
  • Securin degradation is not sufficient for centromere separation or anaphase onset in human cells; other targets of the proteasome must be degraded to allow anaphase onset. (PMID:16205121)
  • data demonstrate that securin is dispensable for chromosomal stability in human cells (PMID:16292982)
  • PTTG may promote angiogenesis by regulating the expression of multiple genes with both pro- and antiangiogenic properties and may thus be a key gene in triggering the angiogenic switch in thyroid tumorigenesis. (PMID:16394085)
  • Data suggest that increased expression of PTTG1 contributes to the tumorigenicity of glioma cells. (PMID:16685397)
  • Treatment of cells with okadaic acid, a potent inhibitor of PP2A, results in various hyperphosphorylated forms of hSecurin which are extremely unstable, due to the action of the Skp1/Cul1/F-box protein complex ubiquitin ligase. (PMID:16705156)
  • High expression of beta-catenin and securin (hPTTG1) in colorectal adenomas and carcinomas; securin is a target of beta-catenin transcriptional activation. (PMID:16705313)
  • PTTG1 is overexpressed in nodular melanoma, and contributes to tumor progression by causing aneuploidy or by modulating p53-function (PMID:16799481)
  • PTTG participates in the pathogenesis of various tumors, including pituitary tumors, by inducing aneuploidy and upregulating FGF-2, a potent mitogenic and angiogenic factor. (PMID:16809406)
  • PTTG has a role in lung tumor growth, and its suppression may inhibit tumor growth (PMID:16820881)
  • Novel PTTG-mediated proliferative pathway that may be critical to thyroid cancer growth and progression. (PMID:16926250)
  • securin may be a critical gene in the development of genetic instability in colorectal cancer. (PMID:17071631)
  • overexpression of PTTG and PBF in differentiated thyroid cancer has profound implications for activity of the NIS gene, and hence significantly impacts upon the efficacy of radioiodine treatment. (PMID:17297475)
  • Results show that PTTG1 exhibits properties of a global transcription factor, and specifically modulates the G1/S-phase transition by interacting with Sp1. (PMID:17353909)
  • HCT116 cells devoid of PTTG1/securin (sec(-/-) HCT116) show a stabilized yet transcriptionally latent form of p53 protein in the absence of DNA damage. (PMID:17383977)
  • Data show that overexpression of human pituitary tumor transforming gene cooperated with the HTLV-I Tax oncoprotein in cellular transformation. (PMID:17507465)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriopttg1ENSDARG00000075421
mus_musculusPttg1ENSMUSG00000020415
rattus_norvegicusPttg1ENSRNOG00000003802

Paralogs (1): PTTG2 (ENSG00000250254)

Protein

Protein identifiers

SecurinO95997 (reviewed: O95997)

Alternative names: Esp1-associated protein, Pituitary tumor-transforming gene 1 protein

All UniProt accessions (3): E5RJR4, O95997, Q6IAL9

UniProt curated annotations — full annotation on UniProt →

Function. Regulatory protein, which plays a central role in chromosome stability, in the p53/TP53 pathway, and DNA repair. Probably acts by blocking the action of key proteins. During the mitosis, it blocks Separase/ESPL1 function, preventing the proteolysis of the cohesin complex and the subsequent segregation of the chromosomes. At the onset of anaphase, it is ubiquitinated, conducting to its destruction and to the liberation of ESPL1. Its function is however not limited to a blocking activity, since it is required to activate ESPL1. Negatively regulates the transcriptional activity and related apoptosis activity of TP53. The negative regulation of TP53 may explain the strong transforming capability of the protein when it is overexpressed. May also play a role in DNA repair via its interaction with Ku, possibly by connecting DNA damage-response pathways with sister chromatid separation.

Subunit / interactions. Interacts with RPS10 and DNAJA1. Interacts with the caspase-like ESPL1, and prevents its protease activity probably by covering its active site. Interacts with TP53 and blocks its activity probably by blocking its binding to DNA. Interacts with the Ku 70 kDa subunit of ds-DNA kinase. Interacts with PTTG1IP.

Subcellular location. Cytoplasm. Nucleus.

Tissue specificity. Expressed at low level in most tissues, except in adult testis, where it is highly expressed. Overexpressed in many patients suffering from pituitary adenomas, primary epithelial neoplasias, and esophageal cancer.

Post-translational modifications. Phosphorylated at Ser-165 by CDK1 during mitosis. Phosphorylated in vitro by ds-DNA kinase. Ubiquitinated through ‘Lys-11’ linkage of ubiquitin moieties by the anaphase promoting complex (APC) at the onset of anaphase, conducting to its degradation. ‘Lys-11’-linked ubiquitination is mediated by the E2 ligase UBE2C/UBCH10.

Domain organisation. The N-terminal destruction box (D-box) acts as a recognition signal for degradation via the ubiquitin-proteasome pathway. The TEK-boxes are required for ‘Lys-11’-linked ubiquitination and facilitate the transfer of the first ubiquitin and ubiquitin chain nucleation. TEK-boxes may direct a catalytically competent orientation of the UBE2C/UBCH10-ubiquitin thioester with the acceptor lysine residue.

Similarity. Belongs to the securin family.

RefSeq proteins (3): NP_001269311, NP_001269312, NP_004210* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR006940Securin_separation_inhibitorFamily

Pfam: PF04856

UniProt features (16 total): mutagenesis site 5, short sequence motif 4, modified residue 2, initiator methionine 1, chain 1, helix 1, strand 1, region of interest 1

Structure

Experimental structures (PDB)

2 structures.

PDBMethodResolution (Å)
7NJ1ELECTRON MICROSCOPY2.9
7NJ0ELECTRON MICROSCOPY3.6

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O95997-F163.830.00

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (2): 2, 165

Mutagenesis-validated functional residues (5):

PositionPhenotype
64abolishes ubiquitination and subsequent degradation; when associated with a-61.
163strongly reduces transforming capability; when associated with l-170; a-172 and l-173.
165abolishes phosphorylation.
170–173strongly reduces transforming capability; when associated with a-163.
61abolishes ubiquitination and subsequent degradation; when associated with a-64.

Function

Pathways and Gene Ontology

Reactome pathways

3 pathways

IDPathway
R-HSA-174154APC/C:Cdc20 mediated degradation of Securin
R-HSA-174178APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-2467813Separation of Sister Chromatids

MSigDB gene sets: 453 (showing top): GOBP_MEIOTIC_CHROMOSOME_SEGREGATION, GOBP_CHROMOSOME_ORGANIZATION, MODULE_52, HORIUCHI_WTAP_TARGETS_DN, REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1, GNF2_CENPF, CROONQUIST_NRAS_SIGNALING_DN, GNF2_H2AFX, MCBRYAN_PUBERTAL_TGFB1_TARGETS_DN, MITSIADES_RESPONSE_TO_APLIDIN_DN, GOBP_MALE_GAMETE_GENERATION, MODULE_16, KAUFFMANN_DNA_REPAIR_GENES, CROSBY_E2F4_TARGETS, WIELAND_UP_BY_HBV_INFECTION

GO Biological Process (7): DNA repair (GO:0006281), spermatogenesis (GO:0007283), homologous chromosome segregation (GO:0045143), chromosome organization (GO:0051276), cell division (GO:0051301), DNA damage response (GO:0006974), chromosome segregation (GO:0007059)

GO Molecular Function (4): cysteine-type endopeptidase inhibitor activity (GO:0004869), SH3 domain binding (GO:0017124), molecular function activator activity (GO:0140677), protein binding (GO:0005515)

GO Cellular Component (3): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829)

Reactome top-level categories

Rollup of top-3 pathways:

CategoryPathways
APC/C:Cdc20 mediated degradation of mitotic proteins1
APC/C-mediated degradation of cell cycle proteins1
Mitotic Anaphase1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure2
DNA metabolic process1
DNA damage response1
developmental process involved in reproduction1
male gamete generation1
meiosis I1
meiotic chromosome segregation1
organelle organization1
cellular process1
cellular response to stress1
cell cycle process1
cysteine-type endopeptidase activity1
endopeptidase inhibitor activity1
protein domain specific binding1
molecular function regulator activity1
binding1
intracellular membrane-bounded organelle1
intracellular anatomical structure1
cytoplasm1

Protein interactions and networks

STRING

1976 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
PTTG1ESPL1Q14674999
PTTG1CDC20Q12834969
PTTG1BUB1BO60566923
PTTG1CDK1P06493902
PTTG1CCNB1P14635900
PTTG1PTTG1IPP53801855
PTTG1BUB1O43683834
PTTG1UBE2CO00762814
PTTG1PLK1P53350809
PTTG1BUB3O43684809
PTTG1CCNB2O95067790
PTTG1SGO1Q5FBB7789
PTTG1RAD21O60216780
PTTG1MAD2L1Q13257774
PTTG1CDC27P30260765

IntAct

31 interactions, top by confidence:

ABTypeScore
ESPL1PTTG1psi-mi:“MI:0407”(direct interaction)0.900
PTTG1ESPL1psi-mi:“MI:0914”(association)0.900
PTTG1ESPL1psi-mi:“MI:0407”(direct interaction)0.900
ESPL1PTTG1psi-mi:“MI:0914”(association)0.900
ESPL1PTTG1psi-mi:“MI:0915”(physical association)0.900
ESPL1RAD21psi-mi:“MI:0570”(protein cleavage)0.620
Espl1PTTG1psi-mi:“MI:0915”(physical association)0.560
PTTG1PLCG2psi-mi:“MI:0915”(physical association)0.490
PLCG2PTTG1psi-mi:“MI:0915”(physical association)0.490
CCNB1PTTG1psi-mi:“MI:0915”(physical association)0.490
PTTG1PTTG1psi-mi:“MI:0915”(physical association)0.400
KEAP1PTTG1psi-mi:“MI:0915”(physical association)0.400
PTTG1CRKpsi-mi:“MI:0915”(physical association)0.370
PTTG1CFTRpsi-mi:“MI:0915”(physical association)0.370
PTTG1PMS1psi-mi:“MI:0914”(association)0.350
Espl1BDP1psi-mi:“MI:0914”(association)0.350
SYNCRIPARHGAP32psi-mi:“MI:0914”(association)0.350
BAG6CNOT1psi-mi:“MI:0914”(association)0.350
Tbc1d7SLC25A20psi-mi:“MI:0914”(association)0.350
YEATS4ING3psi-mi:“MI:0914”(association)0.350
MRPL1MRPL43psi-mi:“MI:0914”(association)0.350
Xpo1IFT56psi-mi:“MI:0914”(association)0.350
CDC27PTTG1psi-mi:“MI:0914”(association)0.350
PTTG1ESPL1psi-mi:“MI:0914”(association)0.350

BioGRID (218): PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), PTTG1 (Reconstituted Complex), PTTG1 (Reconstituted Complex), PTTG1 (Reconstituted Complex), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity), FZR1 (Affinity Capture-Western), PTTG1 (Biochemical Activity), PTTG1 (Biochemical Activity)

ESM2 similar proteins: A1YF19, A2T767, B0K035, F1RCE7, F7BHS0, O95997, P0DPK0, P23999, P97613, Q08B36, Q08BD8, Q09HN1, Q0VA20, Q14140, Q2KHM9, Q2QD14, Q2QD15, Q2T9X8, Q2WG80, Q3SZY3, Q3UHI0, Q3V1H1, Q5R7F8, Q5RBY6, Q5RKG1, Q5XG16, Q5ZJU5, Q6A000, Q6AYH4, Q6DF94, Q7SXC6, Q8BHE0, Q8BHZ5, Q8C804, Q8N0Z3, Q8QGU6, Q8R080, Q8WWK9, Q96C57, Q96FF9

Diamond homologs: A1YF19, A2T767, O95997, P97613, Q2QD14, Q2QD15, Q3SZY3, Q9BDP6, Q9CQJ7, Q9NZH4, Q9NZH5

SIGNOR signaling

23 interactions.

AEffectBMechanism
PTTG1“up-regulates quantity by expression”LGALS1“transcriptional regulation”
PTTG1“down-regulates quantity”TIMP2
PTTG1“up-regulates quantity by expression”S100A4“transcriptional regulation”
Gbetaup-regulatesPTTG1phosphorylation
ERK1/2up-regulatesPTTG1phosphorylation
UBE4B“down-regulates quantity by destabilization”PTTG1polyubiquitination
PTTG1“down-regulates activity”ESPL1binding
GSK3B“down-regulates quantity by destabilization”PTTG1phosphorylation
PPP2CA“up-regulates quantity by stabilization”PTTG1dephosphorylation
CAMK2A“down-regulates quantity by destabilization”PTTG1phosphorylation
GSK3B“down-regulates activity”PTTG1phosphorylation
CDK1up-regulatesPTTG1phosphorylation
MAPK1up-regulatesPTTG1phosphorylation
MAPK3up-regulatesPTTG1phosphorylation
PTTG1“up-regulates activity”Metastasis
APC-c“down-regulates quantity by destabilization”PTTG1ubiquitination

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

32 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance21
Likely benign1
Benign1

Top pathogenic / likely-pathogenic (0)

SpliceAI

771 predictions. Top by Δscore:

VariantEffectΔscore
5:160421877:GCTGT:Gdonor_gain1.0000
5:160421890:GC:Gdonor_gain1.0000
5:160421892:G:GGdonor_gain1.0000
5:160422300:A:AGacceptor_gain1.0000
5:160422301:G:GGacceptor_gain1.0000
5:160422404:G:GGdonor_gain1.0000
5:160421881:T:Gdonor_gain0.9900
5:160421887:CCTGC:Cdonor_gain0.9900
5:160421888:CTGC:Cdonor_gain0.9900
5:160421889:TGC:Tdonor_gain0.9900
5:160421890:GCG:Gdonor_gain0.9900
5:160421891:CG:Cdonor_loss0.9900
5:160421892:GT:Gdonor_loss0.9900
5:160421894:G:GGdonor_loss0.9900
5:160421895:A:ACdonor_loss0.9900
5:160422297:CTTA:Cacceptor_loss0.9900
5:160422298:TTA:Tacceptor_loss0.9900
5:160422300:A:ATacceptor_loss0.9900
5:160422301:G:GTacceptor_loss0.9900
5:160422301:GA:Gacceptor_gain0.9900
5:160422301:GAAT:Gacceptor_gain0.9900
5:160422301:GAATA:Gacceptor_gain0.9900
5:160422400:CCTT:Cdonor_gain0.9900
5:160422401:CTT:Cdonor_gain0.9900
5:160422402:TT:Tdonor_gain0.9900
5:160422402:TTG:Tdonor_loss0.9900
5:160422403:TGT:Tdonor_loss0.9900
5:160422404:GTAAG:Gdonor_loss0.9900
5:160422405:TAA:Tdonor_loss0.9900
5:160422406:A:AGdonor_loss0.9900

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000033782 (5:160426388 C>T), RS1000289158 (5:160425846 T>C), RS1000928629 (5:160421366 C>A,T), RS1001035771 (5:160427858 C>T), RS1001151387 (5:160427490 T>C), RS1001699039 (5:160421676 T>C), RS1001731640 (5:160421894 G>A,C), RS1001829244 (5:160427368 C>T), RS1001945507 (5:160427079 T>G), RS1002495367 (5:160420115 T>C), RS1002601266 (5:160423912 C>T), RS1002605029 (5:160427047 A>G), RS1002692021 (5:160423154 T>C), RS1002723220 (5:160423374 G>T), RS1003638220 (5:160428943 T>C)

Disease associations

OMIM: gene MIM:604147 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

9 associations (top):

StudyTraitp-value
GCST000996_18Systemic lupus erythematosus2.000000e-06
GCST001604_3Insulin-related traits6.000000e-06
GCST003620_2Systemic lupus erythematosus or rheumatoid arthritis1.000000e-07
GCST004867_4Systemic lupus erythematosus2.000000e-06
GCST004878_13Sjögren’s syndrome2.000000e-07
GCST005752_145Systemic lupus erythematosus3.000000e-21
GCST005752_48Systemic lupus erythematosus1.000000e-12
GCST006053_3Dermatomyositis or juvenile dermatomyositis8.000000e-06
GCST007400_28Systemic lupus erythematosus4.000000e-14

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

112 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteincreases expression, increases stability, decreases reaction, decreases response to substance, affects expression (+2 more)6
bisphenol Aaffects expression, decreases expression, decreases methylation, affects cotreatment, increases expression4
Fluorouracilincreases expression, affects reaction, decreases reaction, decreases expression4
Particulate Matterdecreases expression, increases abundance, affects cotreatment4
Cadmiumdecreases expression, increases expression3
Cisplatinaffects expression, affects cotreatment, increases expression, decreases expression3
Cyclosporinedecreases expression3
palbociclibdecreases expression2
Arsenic Trioxideincreases expression, increases reaction2
Fulvestrantdecreases expression, affects cotreatment2
Acetaminophenincreases expression2
Air Pollutantsincreases abundance, decreases expression2
Copperdecreases expression, affects binding2
Dimethylnitrosamineincreases expression2
Doxorubicindecreases expression2
Estradiolincreases expression2
Nickelincreases expression2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Quercetindecreases expression2
Tretinoindecreases expression2
Valproic Aciddecreases expression, decreases methylation, increases expression2
Aflatoxin B1affects expression, increases methylation2
Okadaic Acidaffects expression, increases expression2
abemaciclibdecreases expression1
echimidinedecreases expression, increases metabolic processing1
lasiocarpineincreases metabolic processing, decreases expression1
naringeninaffects cotreatment, increases expression1
propionaldehydedecreases expression1
geranioldecreases expression1
riddelliinedecreases expression, increases metabolic processing1

Cellosaurus cell lines

3 cell lines: 2 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_AW39K562 eGFP-PTTG1Cancer cell lineFemale
CVCL_B9W4Abcam HEK293T PTTG1 KOTransformed cell lineFemale
CVCL_HD93HCT 116 PTTG1(-/-)Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.