PYCR1
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Also known as P5C
Summary
PYCR1 (pyrroline-5-carboxylate reductase 1, HGNC:9721) is a protein-coding gene on chromosome 17q25.3, encoding Pyrroline-5-carboxylate reductase 1, mitochondrial (P32322). Oxidoreductase that catalyzes the last step in proline biosynthesis, which corresponds to the reduction of pyrroline-5-carboxylate to L-proline using NAD(P)H.
This gene encodes an enzyme that catalyzes the NAD(P)H-dependent conversion of pyrroline-5-carboxylate to proline. This enzyme may also play a physiologic role in the generation of NADP(+) in some cell types. The protein forms a homopolymer and localizes to the mitochondrion. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 5831 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal recessive cutis laxa type 2B (Definitive, ClinGen) — +2 more curated relationships
- Clinical variants (ClinVar): 376 total — 20 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 93
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_006907
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9721 |
| Approved symbol | PYCR1 |
| Name | pyrroline-5-carboxylate reductase 1 |
| Location | 17q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | P5C |
| Ensembl gene | ENSG00000183010 |
| Ensembl biotype | protein_coding |
| OMIM | 179035 |
| Entrez | 5831 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 18 protein_coding
ENST00000329875, ENST00000337943, ENST00000402252, ENST00000403172, ENST00000405481, ENST00000577624, ENST00000577756, ENST00000579366, ENST00000579698, ENST00000581271, ENST00000582198, ENST00000583564, ENST00000584848, ENST00000585215, ENST00000585244, ENST00000619204, ENST00000629768, ENST00000922965
RefSeq mRNA: 6 — MANE Select: NM_006907
NM_001282279, NM_001282280, NM_001282281, NM_001330523, NM_006907, NM_153824
CCDS: CCDS11794, CCDS11795, CCDS62365, CCDS62366, CCDS82221
Canonical transcript exons
ENST00000329875 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001295081 | 81934926 | 81935147 |
| ENSE00002370677 | 81935337 | 81935516 |
| ENSE00002385082 | 81934326 | 81934489 |
| ENSE00002427493 | 81934653 | 81934745 |
| ENSE00002726511 | 81936748 | 81937300 |
| ENSE00003679626 | 81936123 | 81936193 |
| ENSE00003890560 | 81932391 | 81933376 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 96.56.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.5591 / max 139.1647, expressed in 1570 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 168866 | 10.8506 | 1539 |
| 168865 | 6.2332 | 1354 |
| 168864 | 0.9921 | 639 |
| 168867 | 0.4832 | 269 |
Top tissues by expression
271 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 96.56 | gold quality |
| body of pancreas | UBERON:0001150 | 95.84 | gold quality |
| parotid gland | UBERON:0001831 | 92.22 | gold quality |
| ventricular zone | UBERON:0003053 | 91.39 | gold quality |
| pancreas | UBERON:0001264 | 90.82 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 90.69 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 89.49 | gold quality |
| pancreatic ductal cell | CL:0002079 | 89.34 | silver quality |
| embryo | UBERON:0000922 | 88.92 | gold quality |
| ganglionic eminence | UBERON:0004023 | 88.66 | gold quality |
| tibia | UBERON:0000979 | 88.34 | gold quality |
| minor salivary gland | UBERON:0001830 | 88.33 | gold quality |
| body of stomach | UBERON:0001161 | 88.05 | gold quality |
| cartilage tissue | UBERON:0002418 | 87.84 | gold quality |
| stomach | UBERON:0000945 | 86.96 | gold quality |
| periodontal ligament | UBERON:0008266 | 86.70 | gold quality |
| cortical plate | UBERON:0005343 | 86.40 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 86.16 | gold quality |
| mouth mucosa | UBERON:0003729 | 86.12 | gold quality |
| olfactory bulb | UBERON:0002264 | 86.08 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.92 | gold quality |
| type B pancreatic cell | CL:0000169 | 84.20 | gold quality |
| islet of Langerhans | UBERON:0000006 | 84.13 | gold quality |
| pituitary gland | UBERON:0000007 | 83.79 | gold quality |
| diaphragm | UBERON:0001103 | 83.74 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 83.66 | gold quality |
| adenohypophysis | UBERON:0002196 | 83.44 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 83.09 | gold quality |
| esophagus mucosa | UBERON:0002469 | 82.69 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 82.61 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-13 | yes | 27.92 |
| E-CURD-112 | yes | 14.97 |
| E-ANND-3 | yes | 11.31 |
| E-MTAB-8271 | yes | 8.34 |
| E-MTAB-9689 | no | 280.95 |
| E-MTAB-10290 | no | 135.67 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, TP53
miRNA regulators (miRDB)
24 targeting PYCR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-378A-5P | 99.65 | 66.33 | 1311 |
| HSA-MIR-7150 | 99.62 | 66.80 | 1322 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-6081 | 99.48 | 66.07 | 1446 |
| HSA-MIR-1253 | 99.12 | 67.08 | 1688 |
| HSA-MIR-4504 | 99.10 | 69.14 | 1328 |
| HSA-MIR-4270 | 99.02 | 66.26 | 1987 |
| HSA-MIR-5000-3P | 98.79 | 65.63 | 1251 |
| HSA-MIR-7113-3P | 98.75 | 65.71 | 1120 |
| HSA-MIR-323A-5P | 98.59 | 65.13 | 651 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-4436A | 98.05 | 64.83 | 1140 |
| HSA-MIR-4287 | 97.55 | 67.24 | 1247 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Mutagenesis and kinetic studies reveal the pivotal roles of the dinucleotide-binding Rossmann motif and residue Glu221 in the human enzyme Pyrroline-5-carboxylate reductase(P5CR). (PMID:16730026)
- In Autosomal-recessive cutis laxa type 2, a single nucleotide change leads to a missense mutation adjacent to a splice junction in the gene encoding PYCR1. (PMID:19576563)
- Mutations in PYCR1 cause cutis laxa with progeroid features. (PMID:19648921)
- The phenotype caused by PYCR1 mutations corresponds to geroderma osteodysplasticum rather than ARCL2B. (PMID:21204221)
- Mutation analysis revealed the presence of disease-causing variants in PYCR1, including a novel deletion of the entire PYCR1 gene in one family, and in each of the other patients the homozygous missense mutations. (PMID:21487760)
- A novel mutation in PYCR1 causes an autosomal recessive cutis laxa with premature aging features in a family. (PMID:21567914)
- The findings presented here suggest a mutation screening of PYCR1 and cardiovascular survey in patients with De Barsy syndrome (DBS). (PMID:22052856)
- Identification of two new mutations in the PYCR1 gene in patients with autosomal recessive cutis laxa, type 2. (PMID:23531708)
- Data suggest that DJ-1 and PYCR1 are on the same pathway of anti-oxidative stress protection of the cells. (PMID:23743200)
- our current study presents the second largest group of patients with PYCR1-related ARCL and expands the clinical and genetic spectrum. (PMID:24035636)
- confirming that indeed PYCR1 generates L-pipecolic acid from Delta(1)-piperideine-6-carboxylate (PMID:24431009)
- Silencing of both PYCR1 and PYCR2 completely abolished anti-oxidation activity of RRM2B, demonstrating a functional collaboration of these metabolic enzymes in response to oxidative stress. (PMID:26733354)
- Results indicate that single-nucleotide polymorphism (SNP)-derived mutations, R119G and G206W, enhance the rigidity of pyrroline-5-carboxylate reductase (P5CR) structure. (PMID:27677826)
- Authors found that PYCR1 was highly expressed in prostate cancer tissues and then knocked down PYCR1 in PCa cell lines (DU145, PC-3 and LNCap) via lentivirus-mediated gene delivery and analyzed its biological function. (PMID:28078560)
- experimental results indicate the R119G mutation could be an involving pathomechanism for Autosomal recessive cutis laxa . (PMID:28194412)
- PYCR1 forms a concentration-dependent decamer in solution, consistent with the pentamer-of-dimers assembly seen crystallographically (PMID:28258219)
- these findings revealed that the mRNA and protein PYCR1 levels were significantly related to the poor outcome in either ER-negative or ER-positive breast cancer. PYCR1 could serve as a prognostic biomarker, therapeutic target and predictive biomarker for breast cancers. (PMID:28379297)
- Authors describe a biosynthetic pathway exhibited by cells expressing mutant IDH1. By virtue of a change in cellular redox homeostasis, IDH1-mutated cells synthesize excess glutamine-derived proline through enhanced activity of pyrroline 5-carboxylate reductase 1 (PYCR1), coupled to NADH oxidation. (PMID:29562167)
- we firmly establish biallelic mutations in POLR3A as the genetic cause of a recognizable, neonatal, Wiedemann-Rautenstrauch-like progeroid syndrome. Thus, we suggest that POLR3A mutations are causal for a portion of under-diagnosed early-onset segmental progeroid syndromes (PMID:30450527)
- PYCR1 is negatively regulated by miR-488 and then promotes the occurrence and development of non-small-cell lung cancer and activates p38 MAPK pathway. (PMID:30605882)
- High PYCR1 expression is associated with migration and Invasion of Nonsmall Cell Lung Cancer. (PMID:30916574)
- acetylation of PYCR1 at K228 inhibits cell proliferation, while deacetylation of PYCR1 mediated by SIRT3 increases PYCR1’s activity. Our findings on the regulation of PYCR1 linked proline metabolism with SIRT3, CBP and cell growth, thus providing a potential approach for cancer therapy. (PMID:31108370)
- PYCR1 plays a role in the proliferation, epithelial-mesenchymal transition and drug resistance by regulating STAT3-mediated p38 MAPK and NF-kappaB signalling pathways in the colorectal cancer cells.PYCR1 is highly espressed in tissues and cells of the colorectal cancer patients. (PMID:31606203)
- PYCR1 interference inhibits cell growth and survival via c-Jun N-terminal kinase/insulin receptor substrate 1 (JNK/IRS1) pathway in hepatocellular cancer. (PMID:31619254)
- Mitochondrial oxidative stress by Lon-PYCR1 maintains an immunosuppressive tumor microenvironment that promotes cancer progression and metastasis. (PMID:31987921)
- High PYCR1 expression is associated with lung adenocarcinoma. (PMID:32133692)
- Oncogenic Kaposi’s sarcoma-associated herpesvirus (KSHV) K1 oncoprotein interacted with and activated PYCR enzyme, increasing intracellular proline concentration. Consequently, the K1-PYCR interaction promoted tumor cell growth in 3D spheroid culture and tumorigenesis in nude mice. This study demonstrates that an increase of proline biosynthesis induced by K1-PYCR interaction is critical for KSHV-mediated tumorigenesis. (PMID:32213586)
- Dysregulation of USP18/FTO/PYCR1 signaling network promotes bladder cancer development and progression. (PMID:33461172)
- PYCR1 promotes bladder cancer by affecting the Akt/Wnt/beta-catenin signaling. (PMID:33689096)
- MiR-328-3p inhibits lung adenocarcinoma-genesis by downregulation PYCR1. (PMID:33706104)
- Deciphering the effects of PYCR1 on cell function and its associated mechanism in hepatocellular carcinoma. (PMID:34239351)
- MiR-1207-5p targets PYCR1 to inhibit the progression of prostate cancer. (PMID:34461437)
- MicroRNA hsa-miR-150-5p inhibits nasopharyngeal carcinogenesis by suppressing PYCR1 (pyrroline-5-carboxylate reductase 1). (PMID:34696668)
- Proline synthesis through PYCR1 is required to support cancer cell proliferation and survival in oxygen-limiting conditions. (PMID:35108535)
- Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix. (PMID:35760868)
- The role of PYCR1 in inhibiting 5-fluorouracil-induced ferroptosis and apoptosis through SLC25A10 in colorectal cancer. (PMID:36104652)
- SENP3 affects the expression of PYCR1 to promote bladder cancer proliferation and EMT transformation by deSUMOylation of STAT3. (PMID:36227136)
- LINC01123 acts as an oncogenic driver in lung adenocarcinoma by regulating the miR-4766-5p/PYCR1 axis. (PMID:36994814)
- Effects of PYCR1 on prognosis and immunotherapy plus tyrosine kinase inhibition responsiveness in metastatic renal cell carcinoma patients. (PMID:37517099)
- IGF1R-phosphorylated PYCR1 facilitates ELK4 transcriptional activity and sustains tumor growth under hypoxia. (PMID:37777542)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pycr1b | ENSDARG00000098639 |
| danio_rerio | pycr1a | ENSDARG00000102254 |
| mus_musculus | Pycr1 | ENSMUSG00000025140 |
| rattus_norvegicus | Pycr1 | ENSRNOG00000036682 |
| drosophila_melanogaster | P5cr-2 | FBGN0038516 |
| caenorhabditis_elegans | WBGENE00010924 |
Paralogs (3): PYCR3 (ENSG00000104524), PYCR2 (ENSG00000143811), NOXRED1 (ENSG00000165555)
Protein
Protein identifiers
Pyrroline-5-carboxylate reductase 1, mitochondrial — P32322 (reviewed: P32322)
All UniProt accessions (13): E2QRB3, P32322, J3KQ22, J3KSA9, J3KTA8, J3QKT3, J3QKT4, J3QL23, J3QL24, J3QL32, J3QLK9, J3QR88, J3QRZ0
UniProt curated annotations — full annotation on UniProt →
Function. Oxidoreductase that catalyzes the last step in proline biosynthesis, which corresponds to the reduction of pyrroline-5-carboxylate to L-proline using NAD(P)H. At physiologic concentrations, has higher specific activity in the presence of NADH. Involved in the cellular response to oxidative stress.
Subunit / interactions. Homodecamer; composed of 5 homodimers (PubMed:16730026, PubMed:28258219, Ref.19). Interacts with LTO1.
Subcellular location. Mitochondrion.
Disease relevance. Cutis laxa, autosomal recessive, 2B (ARCL2B) [MIM:612940] A disorder characterized by an excessive congenital skin wrinkling, a large fontanelle with delayed closure, a typical facial appearance with downslanting palpebral fissures, a general connective tissue weakness, and varying degrees of growth and developmental delay and neurological abnormalities. Patients do not manifest metabolic abnormalities. The disease is caused by variants affecting the gene represented in this entry. Cutis laxa, autosomal recessive, 3B (ARCL3B) [MIM:614438] A disorder characterized by an aged appearance with distinctive facial features, sparse hair, ophthalmologic abnormalities, intrauterine growth retardation, and cutis laxa. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Subject to competitive inhibition by the reaction product proline. Subject to competitive inhibition by stearoyl coenzyme A.
Pathway. Amino-acid biosynthesis; L-proline biosynthesis; L-proline from L-glutamate 5-semialdehyde: step 1/1.
Similarity. Belongs to the pyrroline-5-carboxylate reductase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P32322-1 | 1 | yes |
| P32322-2 | 2 | |
| P32322-3 | 3 |
RefSeq proteins (6): NP_001269208, NP_001269209, NP_001269210, NP_001317452, NP_008838, NP_722546 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000304 | Pyrroline-COOH_reductase | Family |
| IPR008927 | 6-PGluconate_DH-like_C_sf | Homologous_superfamily |
| IPR028939 | P5C_Rdtase_cat_N | Domain |
| IPR029036 | P5CR_dimer | Domain |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
| IPR053790 | P5CR-like_CS | Conserved_site |
Pfam: PF03807, PF14748
Enzyme classification (BRENDA):
- EC 1.5.1.2 — pyrroline-5-carboxylate reductase (BRENDA: 43 organisms, 56 substrates, 140 inhibitors, 118 Km, 52 kcat entries)
Substrate kinetics (BRENDA)
11 substrates with measured Km, best-characterized 11. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 1-PYRROLINE-5-CARBOXYLATE | 0.02–2.887 | 41 |
| NADH | 0.025–1.55 | 26 |
| NADPH | 0.006–0.719 | 24 |
| DL-PYRROLINE-5-CARBOXYLATE | 0.051–0.62 | 5 |
| L-PROLINE | 0.12–50 | 5 |
| NADP+ | 0.093–3.06 | 5 |
| NAD+ | 0.151–10.5 | 3 |
| L-PYRROLINE-5-CARBOXYLATE | 0.33 | 2 |
| 3,4-DEHYDRO-L-PROLINE | 0.141 | 1 |
| DELTA1-PYRROLINE-3-HYDROXY-5-CARBOXYLATE | 4.4 | 1 |
| PYRROLINE-5-CARBOXYLATE | — | 0 |
Catalyzed reactions (Rhea), 2 shown:
- L-proline + NAD(+) = (S)-1-pyrroline-5-carboxylate + NADH + 2 H(+) (RHEA:14105)
- L-proline + NADP(+) = (S)-1-pyrroline-5-carboxylate + NADPH + 2 H(+) (RHEA:14109)
UniProt features (69 total): binding site 18, helix 17, sequence variant 11, strand 10, modified residue 3, splice variant 2, mutagenesis site 2, sequence conflict 2, initiator methionine 1, chain 1, region of interest 1, turn 1
Structure
Experimental structures (PDB)
47 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9P0R | X-RAY DIFFRACTION | 1.49 |
| 9S04 | X-RAY DIFFRACTION | 1.57 |
| 9P0S | X-RAY DIFFRACTION | 1.58 |
| 8TD7 | X-RAY DIFFRACTION | 1.61 |
| 8TD2 | X-RAY DIFFRACTION | 1.65 |
| 9S01 | X-RAY DIFFRACTION | 1.65 |
| 9S02 | X-RAY DIFFRACTION | 1.65 |
| 9P0U | X-RAY DIFFRACTION | 1.66 |
| 8TD3 | X-RAY DIFFRACTION | 1.67 |
| 9RZZ | X-RAY DIFFRACTION | 1.7 |
| 8TD8 | X-RAY DIFFRACTION | 1.71 |
| 8TCX | X-RAY DIFFRACTION | 1.72 |
| 8TCV | X-RAY DIFFRACTION | 1.74 |
| 9P0Q | X-RAY DIFFRACTION | 1.74 |
| 6XP1 | X-RAY DIFFRACTION | 1.75 |
| 8TD9 | X-RAY DIFFRACTION | 1.75 |
| 9Q46 | X-RAY DIFFRACTION | 1.75 |
| 8TD4 | X-RAY DIFFRACTION | 1.76 |
| 9P0T | X-RAY DIFFRACTION | 1.79 |
| 9Q45 | X-RAY DIFFRACTION | 1.79 |
| 8TDC | X-RAY DIFFRACTION | 1.8 |
| 9P0V | X-RAY DIFFRACTION | 1.8 |
| 8TD5 | X-RAY DIFFRACTION | 1.81 |
| 8VRE | X-RAY DIFFRACTION | 1.83 |
| 5UAV | X-RAY DIFFRACTION | 1.85 |
| 5UAW | X-RAY DIFFRACTION | 1.85 |
| 5UAX | X-RAY DIFFRACTION | 1.85 |
| 8DKG | X-RAY DIFFRACTION | 1.85 |
| 8TD1 | X-RAY DIFFRACTION | 1.88 |
| 5UAU | X-RAY DIFFRACTION | 1.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P32322-F1 | 89.98 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (18): 56; 56; 69–72; 70; 71; 95–97; 97; 164; 230; 237; 238; 6–11 …
Post-translational modifications (3): 2, 278, 301
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 221 | reduced enzyme activity. |
| 238 | decreased pyrroline-5-carboxylate reductase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-8964539 | Glutamate and glutamine metabolism |
MSigDB gene sets: 371 (showing top):
MODULE_93, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, GOBP_GLUTAMINE_FAMILY_AMINO_ACID_BIOSYNTHETIC_PROCESS, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_DN, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_DN, GOBP_AMINO_ACID_BIOSYNTHETIC_PROCESS, GOBP_GLUTAMINE_FAMILY_AMINO_ACID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, SCHUHMACHER_MYC_TARGETS_UP, MCBRYAN_PUBERTAL_BREAST_4_5WK_DN, GOBP_NEGATIVE_REGULATION_OF_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY
GO Biological Process (6): cellular response to oxidative stress (GO:0034599), regulation of mitochondrial membrane potential (GO:0051881), L-proline biosynthetic process (GO:0055129), negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway (GO:1903377), obsolete proline biosynthetic process (GO:0006561), amino acid biosynthetic process (GO:0008652)
GO Molecular Function (4): pyrroline-5-carboxylate reductase activity (GO:0004735), identical protein binding (GO:0042802), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (2): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| response to oxidative stress | 1 |
| cellular response to chemical stress | 1 |
| regulation of membrane potential | 1 |
| L-proline metabolic process | 1 |
| glutamate family amino acid biosynthetic process | 1 |
| neuron intrinsic apoptotic signaling pathway in response to oxidative stress | 1 |
| negative regulation of neuron apoptotic process | 1 |
| negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway | 1 |
| regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway | 1 |
| amino acid metabolic process | 1 |
| biosynthetic process | 1 |
| oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | 1 |
| protein binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
1820 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PYCR1 | ALDH18A1 | P54886 | 956 |
| PYCR1 | JAG2 | Q9Y219 | 949 |
| PYCR1 | PCF11 | O94913 | 918 |
| PYCR1 | GORAB | Q5T7V8 | 823 |
| PYCR1 | ATP6V0A2 | Q9Y487 | 808 |
| PYCR1 | EFEMP2 | O95967 | 779 |
| PYCR1 | ALDH4A1 | P30038 | 768 |
| PYCR1 | PRODH | O43272 | 762 |
| PYCR1 | LTO1 | Q8WV07 | 757 |
| PYCR1 | POLR2A | P24928 | 753 |
| PYCR1 | PRODH | O43272 | 734 |
| PYCR1 | OAT | P04181 | 712 |
| PYCR1 | FBLN5 | Q9UBX5 | 693 |
| PYCR1 | TRIM11 | Q96F44 | 667 |
| PYCR1 | PLEKHF1 | Q96S99 | 666 |
IntAct
146 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDC23 | BUB1B | psi-mi:“MI:0914”(association) | 0.790 |
| ANAPC16 | BUB1B | psi-mi:“MI:0914”(association) | 0.730 |
| ANAPC2 | BUB1B | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| PYCR1 | PYCR1 | psi-mi:“MI:0407”(direct interaction) | 0.680 |
| PYCR1 | PYCR1 | psi-mi:“MI:0915”(physical association) | 0.680 |
| rep | POLA1 | psi-mi:“MI:0914”(association) | 0.670 |
| PARK7 | PYCR1 | psi-mi:“MI:0915”(physical association) | 0.610 |
| PYCR1 | PARK7 | psi-mi:“MI:0403”(colocalization) | 0.610 |
| PYCR1 | PARK7 | psi-mi:“MI:0915”(physical association) | 0.610 |
| TNPO2 | PYCR1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HNRNPH2 | PLOD2 | psi-mi:“MI:0914”(association) | 0.530 |
| PYCR1 | PYCR3 | psi-mi:“MI:0914”(association) | 0.530 |
| rep | PYCR1 | psi-mi:“MI:0914”(association) | 0.460 |
| AIFM1 | HAX1 | psi-mi:“MI:2364”(proximity) | 0.420 |
| AIFM1 | SEC16A | psi-mi:“MI:2364”(proximity) | 0.420 |
| HTRA2 | HAX1 | psi-mi:“MI:2364”(proximity) | 0.420 |
BioGRID (273): PYCR1 (Affinity Capture-MS), PYCR1 (Affinity Capture-MS), PYCR1 (Affinity Capture-MS), PYCR1 (Affinity Capture-MS), NUDT5 (Affinity Capture-MS), PYCR2 (Affinity Capture-MS), KLHDC10 (Affinity Capture-MS), PYCRL (Affinity Capture-MS), CCDC47 (Co-fractionation), PYCR1 (Co-fractionation), PYCR1 (Affinity Capture-MS), PYCR1 (Affinity Capture-MS), PYCR1 (Affinity Capture-MS), PYCR1 (Proximity Label-MS), PYCR1 (Affinity Capture-MS)
ESM2 similar proteins: A0A0C1E1C6, A0A348AXY1, A0A411KUQ8, A1CP85, B6HAA7, B8M0U4, C5PA86, L0E163, P00927, P0CM22, P0CM23, P32263, P32322, P40386, P41835, P54889, Q00055, Q09921, Q17QJ7, Q20848, Q39659, Q4P219, Q4PNS1, Q4R6W7, Q4WEE0, Q55E34, Q58DT4, Q59W33, Q5R9X6, Q5RAQ3, Q5SPD7, Q5ZKA5, Q6AY23, Q6CR99, Q6FN96, Q6J5J3, Q6ZZF4, Q759G5, Q7ZA43, Q8K009
Diamond homologs: A0A411KUQ8, P32322, Q12641, Q12740, Q17QJ7, Q4R6W7, Q58D08, Q58DT4, Q5R9X6, Q6AY23, Q922Q4, Q922W5, A0A348AXY1, A1L2Q8, E0TY11, O04016, P0A9L8, P0A9L9, P0C1E4, P0C1E5, P0CI77, P17817, P22008, P27771, P32263, P46725, P52053, P54552, P54893, P54904, P74572, P9WHU6, P9WHU7, Q04708, Q20848, Q4R531, Q53H96, Q5PQJ6, Q5RAQ3, Q5SPD7
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 153 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components | 7 | 42.3× | 8e-08 |
| Inactivation of APC/C via direct inhibition of the APC/C complex | 7 | 34.6× | 1e-07 |
| Phosphorylation of the APC/C | 6 | 31.1× | 2e-06 |
| Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase | 6 | 29.7× | 2e-06 |
| Aberrant regulation of mitotic exit in cancer due to RB1 defects | 6 | 29.7× | 2e-06 |
| APC-Cdc20 mediated degradation of Nek2A | 7 | 28.2× | 3e-07 |
| APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint | 7 | 28.2× | 3e-07 |
| Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins | 7 | 27.2× | 4e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein branched polyubiquitination | 6 | 38.9× | 3e-06 |
| anaphase-promoting complex-dependent catabolic process | 7 | 37.8× | 4e-07 |
| regulation of meiotic cell cycle | 6 | 35.4× | 4e-06 |
| protein K11-linked ubiquitination | 6 | 18.1× | 2e-04 |
| regulation of mitotic cell cycle | 6 | 11.1× | 2e-03 |
| protein K48-linked ubiquitination | 7 | 9.1× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
376 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 20 |
| Likely pathogenic | 16 |
| Uncertain significance | 133 |
| Likely benign | 150 |
| Benign | 16 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 13190 | NM_006907.4(PYCR1):c.797G>A (p.Arg266Gln) | Pathogenic |
| 13191 | NM_006907.4(PYCR1):c.616G>T (p.Gly206Trp) | Pathogenic |
| 13192 | NM_006907.4(PYCR1):c.618_633+7del | Pathogenic |
| 13195 | NM_006907.4(PYCR1):c.11del (p.Gly4fs) | Pathogenic |
| 13196 | NM_006907.4(PYCR1):c.355C>G (p.Arg119Gly) | Pathogenic |
| 2082773 | NM_006907.4(PYCR1):c.570_571insA (p.Gly191fs) | Pathogenic |
| 2840833 | NM_006907.4(PYCR1):c.486_517del (p.Glu163fs) | Pathogenic |
| 29864 | NM_006907.4(PYCR1):c.345del (p.Arg116fs) | Pathogenic |
| 3069061 | NM_006907.4(PYCR1):c.148del (p.Gly49_Val50insTer) | Pathogenic |
| 3662010 | NM_006907.4(PYCR1):c.138+2T>G | Pathogenic |
| 3711852 | NM_006907.4(PYCR1):c.633+2T>G | Pathogenic |
| 4720032 | NM_006907.4(PYCR1):c.118del (p.Ala40fs) | Pathogenic |
| 4724740 | NM_006907.4(PYCR1):c.509_513del (p.Val170fs) | Pathogenic |
| 4725770 | NM_006907.4(PYCR1):c.176_194del (p.Thr59fs) | Pathogenic |
| 4764024 | NM_006907.4(PYCR1):c.663_670dup (p.Pro224fs) | Pathogenic |
| 488457 | NM_006907.4(PYCR1):c.59dup (p.Ala21fs) | Pathogenic |
| 694681 | NM_006907.4(PYCR1):c.11G>T (p.Gly4Val) | Pathogenic |
| 694712 | NM_006907.4(PYCR1):c.540+1G>A | Pathogenic |
| 871527 | NM_006907.4(PYCR1):c.349G>T (p.Val117Phe) | Pathogenic |
| 996064 | NM_006907.4(PYCR1):c.67+2T>A | Pathogenic |
| 1526132 | NM_006907.4(PYCR1):c.540+1G>T | Likely pathogenic |
| 1526245 | NM_006907.4(PYCR1):c.556G>T (p.Asp186Tyr) | Likely pathogenic |
| 2572601 | NM_006907.4(PYCR1):c.386_387insCGCA (p.Glu130fs) | Likely pathogenic |
| 2882123 | NM_006907.4(PYCR1):c.291_294dup (p.Val99fs) | Likely pathogenic |
| 3583145 | NM_006907.4(PYCR1):c.394_400del (p.Ala132fs) | Likely pathogenic |
| 3583146 | NM_006907.4(PYCR1):c.318+1G>A | Likely pathogenic |
| 3583147 | NM_006907.4(PYCR1):c.231dup (p.Ile78fs) | Likely pathogenic |
| 392367 | NM_006907.4(PYCR1):c.798-1G>A | Likely pathogenic |
| 4076962 | NM_006907.4(PYCR1):c.181C>T (p.Gln61Ter) | Likely pathogenic |
| 426550 | NM_006907.4(PYCR1):c.637G>A (p.Ala213Thr) | Likely pathogenic |
SpliceAI
1055 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:81933372:GCTCC:G | acceptor_gain | 1.0000 |
| 17:81933373:CTCC:C | acceptor_gain | 1.0000 |
| 17:81933373:CTCCC:C | acceptor_gain | 1.0000 |
| 17:81933374:TCC:T | acceptor_gain | 1.0000 |
| 17:81933374:TCCCT:T | acceptor_gain | 1.0000 |
| 17:81933375:CC:C | acceptor_gain | 1.0000 |
| 17:81933375:CCC:C | acceptor_gain | 1.0000 |
| 17:81933376:CC:C | acceptor_gain | 1.0000 |
| 17:81933377:C:CC | acceptor_gain | 1.0000 |
| 17:81934386:T:A | donor_gain | 1.0000 |
| 17:81934486:CCCC:C | acceptor_gain | 1.0000 |
| 17:81934487:CCC:C | acceptor_gain | 1.0000 |
| 17:81934487:CCCC:C | acceptor_gain | 1.0000 |
| 17:81934488:CC:C | acceptor_gain | 1.0000 |
| 17:81934488:CCC:C | acceptor_gain | 1.0000 |
| 17:81934489:CC:C | acceptor_gain | 1.0000 |
| 17:81934490:C:A | acceptor_loss | 1.0000 |
| 17:81934491:T:C | acceptor_loss | 1.0000 |
| 17:81934647:A:AC | donor_gain | 1.0000 |
| 17:81934648:C:CC | donor_gain | 1.0000 |
| 17:81934924:A:AC | donor_gain | 1.0000 |
| 17:81934925:C:CA | donor_gain | 1.0000 |
| 17:81934978:TCC:T | donor_gain | 1.0000 |
| 17:81934984:T:TA | donor_gain | 1.0000 |
| 17:81935143:AGCTT:A | acceptor_gain | 1.0000 |
| 17:81935145:CTT:C | acceptor_gain | 1.0000 |
| 17:81935145:CTTC:C | acceptor_loss | 1.0000 |
| 17:81935146:TT:T | acceptor_gain | 1.0000 |
| 17:81935147:TC:T | acceptor_loss | 1.0000 |
| 17:81935148:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
2066 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:81935097:G:C | N123K | 0.999 |
| 17:81935097:G:T | N123K | 0.999 |
| 17:81934354:C:G | A257P | 0.998 |
| 17:81934711:C:T | G192D | 0.998 |
| 17:81934332:C:G | R264P | 0.997 |
| 17:81934715:C:A | G191W | 0.997 |
| 17:81934944:A:C | S174R | 0.997 |
| 17:81934944:A:T | S174R | 0.997 |
| 17:81934946:T:G | S174R | 0.997 |
| 17:81934951:C:T | G172E | 0.997 |
| 17:81934952:C:A | G172W | 0.997 |
| 17:81935075:C:A | G131W | 0.997 |
| 17:81935362:C:T | G98D | 0.997 |
| 17:81933371:A:G | L268P | 0.996 |
| 17:81934723:A:G | L188P | 0.996 |
| 17:81934727:C:G | A187P | 0.996 |
| 17:81934936:C:T | G177D | 0.996 |
| 17:81934942:C:T | G175D | 0.996 |
| 17:81935060:C:G | A136P | 0.996 |
| 17:81935075:C:G | G131R | 0.996 |
| 17:81935075:C:T | G131R | 0.996 |
| 17:81935108:A:G | C120R | 0.996 |
| 17:81935365:G:T | A97D | 0.996 |
| 17:81936162:G:C | S33R | 0.996 |
| 17:81936162:G:T | S33R | 0.996 |
| 17:81936164:T:G | S33R | 0.996 |
| 17:81934353:G:T | A257D | 0.995 |
| 17:81934439:C:A | K228N | 0.995 |
| 17:81934439:C:G | K228N | 0.995 |
| 17:81934482:G:T | A214D | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000620594 (17:81938144 A>T), RS1000962824 (17:81933173 GAA>G), RS1001510551 (17:81934791 C>T), RS1002232798 (17:81931890 C>T), RS1002289761 (17:81937135 A>AG), RS1002941338 (17:81937433 C>A,G,T), RS1002965607 (17:81934747 T>A,C), RS1003065407 (17:81932668 G>A,C), RS1003276150 (17:81936199 G>A), RS1003548171 (17:81932326 T>C,G), RS1004602308 (17:81934394 A>G), RS1005408145 (17:81933941 G>A,C), RS1005428765 (17:81938902 C>T), RS1005693203 (17:81936468 G>A), RS1005701798 (17:81936768 G>A,C,T)
Disease associations
OMIM: gene MIM:179035 | disease phenotypes: MIM:612940, MIM:614438
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| PYCR1-related de Barsy syndrome | Definitive | Autosomal recessive |
| autosomal recessive cutis laxa type 2B | Definitive | Autosomal recessive |
| geroderma osteodysplastica | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive cutis laxa type 2B | Definitive | AR |
Mondo (5): autosomal recessive cutis laxa type 2B (MONDO:0013051), PYCR1-related de Barsy syndrome (MONDO:0013755), cutis laxa (MONDO:0016175), microcephaly (MONDO:0001149), geroderma osteodysplastica (MONDO:0009271)
Orphanet (4): Autosomal recessive cutis laxa type 2B (Orphanet:357064), Cutis laxa (Orphanet:209), PYCR1-related De Barsy syndrome (Orphanet:293633), De Barsy syndrome (Orphanet:2962)
HPO phenotypes
93 total (30 of 93 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000218 | High palate |
| HP:0000233 | Thin vermilion border |
| HP:0000238 | Hydrocephalus |
| HP:0000239 | Large fontanelles |
| HP:0000252 | Microcephaly |
| HP:0000272 | Malar flattening |
| HP:0000303 | Mandibular prognathia |
| HP:0000316 | Hypertelorism |
| HP:0000325 | Triangular face |
| HP:0000337 | Broad forehead |
| HP:0000343 | Long philtrum |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000411 | Protruding ear |
| HP:0000414 | Bulbous nose |
| HP:0000418 | Narrow nasal ridge |
| HP:0000430 | Underdeveloped nasal alae |
| HP:0000460 | Narrow nose |
| HP:0000478 | Abnormality of the eye |
| HP:0000482 | Microcornea |
| HP:0000490 | Deeply set eye |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000501 | Glaucoma |
| HP:0000504 | Abnormality of vision |
| HP:0000518 | Cataract |
| HP:0000592 | Blue sclerae |
| HP:0000601 | Hypotelorism |
GWAS associations
0 associations (top):
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003483 | Cutis Laxa | C16.320.850.180; C17.300.230; C17.800.827.180 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| C567855 | Cutis Laxa, Autosomal Recessive, Type IIB (supp.) | |
| C537799 | Gerodermia osteodysplastica (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4296002 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 11,884 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL673 | PARGYLINE | 4 | 11,884 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
5 potent at pChembl≥5 of 41 total, top 5 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.30 | Kd | 50.33 | nM | CHEMBL5653589 |
| 7.30 | ED50 | 50.33 | nM | CHEMBL5653589 |
| 5.06 | IC50 | 8800 | nM | CHEMBL4442920 |
| 5.04 | IC50 | 9200 | nM | CHEMBL4452615 |
| 5.01 | IC50 | 9700 | nM | CHEMBL4462797 |
PubChem BioAssay actives
4 with measured affinity, of 73 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149158: Binding affinity to human PYCR1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0503 | uM |
| N-[(4-bromophenyl)methyl]-N-methylprop-2-yn-1-amine | 1589018: Inhibition of 6x-His-tagged and SUMO tagged human PYCR1 expressed in Escherichia coli BL21 (DE3) cells assessed as reduction in NADH oxidation incubated for 1 hr | ic50 | 8.8000 | uM |
| N-[(2,4-dichlorophenyl)methyl]-N-methylprop-2-yn-1-amine | 1589018: Inhibition of 6x-His-tagged and SUMO tagged human PYCR1 expressed in Escherichia coli BL21 (DE3) cells assessed as reduction in NADH oxidation incubated for 1 hr | ic50 | 9.2000 | uM |
| N-[(4-iodophenyl)methyl]-N-methylprop-2-yn-1-amine | 1589018: Inhibition of 6x-His-tagged and SUMO tagged human PYCR1 expressed in Escherichia coli BL21 (DE3) cells assessed as reduction in NADH oxidation incubated for 1 hr | ic50 | 9.7000 | uM |
CTD chemical–gene interactions
62 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, increases methylation, affects cotreatment | 4 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 4 |
| bisphenol A | decreases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Cadmium | increases abundance, increases expression | 2 |
| Estradiol | increases expression | 2 |
| Plant Extracts | affects cotreatment, decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| chloroacetaldehyde | affects expression | 1 |
| benzo(b)fluoranthene | decreases expression, affects cotreatment | 1 |
| nobiletin | decreases expression, decreases reaction | 1 |
| sodium arsenate | decreases expression, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| benz(a)anthracene | affects cotreatment, decreases expression | 1 |
| chrysene | affects cotreatment, decreases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) | increases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | decreases expression, increases response to substance | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
ChEMBL screening assays
12 unique, capped per target: 12 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4119009 | Binding | Binding affinity to PYCR1 in human NCI-H358 cells at 1 uM by mass spectrometry based pull down assay | Studies of TAK1-centered polypharmacology with novel covalent TAK1 inhibitors. — Bioorg Med Chem |
Cellosaurus cell lines
6 cell lines: 6 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1QA | Abcam K-562 PYCR1 KO | Cancer cell line | Female |
| CVCL_D2LW | Abcam Raji PYCR1 KO | Cancer cell line | Male |
| CVCL_TH84 | HAP1 PYCR1 (-) 1 | Cancer cell line | Male |
| CVCL_TH85 | HAP1 PYCR1 (-) 2 | Cancer cell line | Male |
| CVCL_TH86 | HAP1 PYCR1 (-) 3 | Cancer cell line | Male |
| CVCL_WQ44 | Abcam Jurkat PYCR1 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
23 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03887208 | PHASE1/PHASE2 | COMPLETED | Therapy of Scars and Cutis Laxa With Autologous Adipose Derived Mesenchymal Stem Cells |
| NCT01293864 | Not specified | TERMINATED | Structural Analysis of Human Tissue |
| NCT01658163 | Not specified | COMPLETED | Use of 2-octyl-cyanoacrylate Together With a Self-adhering Mesh |
| NCT06330324 | Not specified | ENROLLING_BY_INVITATION | Reproductive Options in Inherited Skin Diseases |
| NCT06330350 | Not specified | RECRUITING | Qualitative Study in Patients With Genodermatoses and Healthcare Professionals on Reproductive Counselling |
| NCT07614997 | Not specified | NOT_YET_RECRUITING | Effectiveness and Safety of the Ulthera® System for Skin Laxity in the Lower Face, Submentum and Neck |
| NCT05518188 | PHASE1/PHASE2 | RECRUITING | Melpida: Recombinant Adeno-associated Virus (serotype 9) Encoding a Codon Optimized Human AP4M1 Transgene (hAP4M1opt) |
| NCT00001639 | Not specified | COMPLETED | Evaluation of Patients With Unresolved Chromosome Abnormalities |
| NCT01151462 | Not specified | WITHDRAWN | Postnatal HCMV Infection in Very Preterm Infants. Implications, Morbidity, Growth and Neurodevelopmental Outcomes. |
| NCT01565005 | Not specified | COMPLETED | Microcephaly Genetic Deficiency in Neural Progenitors |
| NCT02510170 | Not specified | COMPLETED | Fetal and Maternal Head Circumference During Pregnancy in Israeli Population |
| NCT02741882 | Not specified | COMPLETED | Zika and Microcephaly: Case-control Study |
| NCT02943304 | Not specified | COMPLETED | Neurodevelopment Outcome of Newborns Exposed to Zika Virus (ZIKV) in Utero |
| NCT03255369 | Not specified | UNKNOWN | Vertical Exposure to Zika Virus and Its Consequences for Child Neurodevelopment (ZIKVIRUSIFF) |
| NCT03325946 | Not specified | RECRUITING | The FBRI VTC Neuromotor Research Clinic |
| NCT03330600 | Not specified | COMPLETED | Efficacy of Aquatic Physiotherapy in Children With Microcephaly by Zika Virus Congenital Syndrome |
| NCT03548779 | Not specified | COMPLETED | North Carolina Genomic Evaluation by Next-generation Exome Sequencing, 2 |
| NCT03651687 | Not specified | COMPLETED | Guangzhou Surveillance and Clinical Study in Microcephaly (GSCSM) |
| NCT03922594 | Not specified | TERMINATED | Surveillance of Zika-related Microcephaly in Sub-Saharan Africa and Asia |
| NCT04816175 | Not specified | COMPLETED | Intensive Therapy for Children With Microcephaly, Hyperkinetic Movements, or Global Developmental Delay |
| NCT05322980 | Not specified | COMPLETED | Summary of Infants Weighing 500 Grams or Less |
| NCT06019182 | Not specified | RECRUITING | MEHMO Natural History and Biomarkers |
| NCT06566066 | Not specified | RECRUITING | Register for Patients With Thyroid Hormone Resistance. |
Related Atlas pages
- Associated diseases: PYCR1-related de Barsy syndrome, autosomal recessive cutis laxa type 2B, geroderma osteodysplastica
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive cutis laxa type 2B, cutis laxa, geroderma osteodysplastica, PYCR1-related de Barsy syndrome