PYGL
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Also known as GSD6
Summary
PYGL (glycogen phosphorylase L, HGNC:9725) is a protein-coding gene on chromosome 14q22.1, encoding Glycogen phosphorylase, liver form (P06737). Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.
This gene encodes a homodimeric protein that catalyses the cleavage of alpha-1,4-glucosidic bonds to release glucose-1-phosphate from liver glycogen stores. This protein switches from inactive phosphorylase B to active phosphorylase A by phosphorylation of serine residue 15. Activity of this enzyme is further regulated by multiple allosteric effectors and hormonal controls. Humans have three glycogen phosphorylase genes that encode distinct isozymes that are primarily expressed in liver, brain and muscle, respectively. The liver isozyme serves the glycemic demands of the body in general while the brain and muscle isozymes supply just those tissues. In glycogen storage disease type VI, also known as Hers disease, mutations in liver glycogen phosphorylase inhibit the conversion of glycogen to glucose and results in moderate hypoglycemia, mild ketosis, growth retardation and hepatomegaly. Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 5836 — RefSeq curated summary.
At a glance
- Gene–disease (curated): glycogen storage disease VI (Definitive, ClinGen)
- GWAS associations: 4
- Clinical variants (ClinVar): 452 total — 43 pathogenic, 27 likely-pathogenic
- Phenotypes (HPO): 34
- Druggable target: yes — 3 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002863
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9725 |
| Approved symbol | PYGL |
| Name | glycogen phosphorylase L |
| Location | 14q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GSD6 |
| Ensembl gene | ENSG00000100504 |
| Ensembl biotype | protein_coding |
| OMIM | 613741 |
| Entrez | 5836 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 19 protein_coding, 4 retained_intron
ENST00000216392, ENST00000528757, ENST00000530336, ENST00000532107, ENST00000532462, ENST00000544180, ENST00000553872, ENST00000874286, ENST00000874287, ENST00000874288, ENST00000874289, ENST00000874290, ENST00000874291, ENST00000924121, ENST00000924122, ENST00000924123, ENST00000924124, ENST00000924125, ENST00000941158, ENST00000941159, ENST00000941160, ENST00000941161, ENST00000941162
RefSeq mRNA: 2 — MANE Select: NM_002863
NM_001163940, NM_002863
CCDS: CCDS32080, CCDS53894
Canonical transcript exons
ENST00000216392 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000657191 | 50920956 | 50921067 |
| ENSE00000657192 | 50923969 | 50924100 |
| ENSE00001507082 | 50916962 | 50917105 |
| ENSE00002175022 | 50944161 | 50944483 |
| ENSE00002201324 | 50905217 | 50905556 |
| ENSE00003499601 | 50914701 | 50914815 |
| ENSE00003503537 | 50915825 | 50915971 |
| ENSE00003513330 | 50908821 | 50908955 |
| ENSE00003545313 | 50911730 | 50911871 |
| ENSE00003554617 | 50935107 | 50935185 |
| ENSE00003579352 | 50931673 | 50931776 |
| ENSE00003584178 | 50911978 | 50912036 |
| ENSE00003586911 | 50909895 | 50910102 |
| ENSE00003594453 | 50920541 | 50920623 |
| ENSE00003612549 | 50915336 | 50915499 |
| ENSE00003614745 | 50913029 | 50913130 |
| ENSE00003625852 | 50908271 | 50908337 |
| ENSE00003642482 | 50916642 | 50916734 |
| ENSE00003647602 | 50912156 | 50912303 |
| ENSE00003689518 | 50937736 | 50937837 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 97.79.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 58.4449 / max 4611.1911, expressed in 1758 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 143183 | 35.4838 | 1735 |
| 143182 | 18.0625 | 1714 |
| 143181 | 3.8982 | 1372 |
| 143180 | 1.0003 | 556 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| blood | UBERON:0000178 | 97.79 | gold quality |
| monocyte | CL:0000576 | 97.59 | gold quality |
| mononuclear cell | CL:0000842 | 97.17 | gold quality |
| leukocyte | CL:0000738 | 97.07 | gold quality |
| right lobe of liver | UBERON:0001114 | 96.71 | gold quality |
| bone marrow | UBERON:0002371 | 96.28 | gold quality |
| adipose tissue | UBERON:0001013 | 96.18 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 95.99 | gold quality |
| bone marrow cell | CL:0002092 | 95.90 | gold quality |
| omental fat pad | UBERON:0010414 | 95.85 | gold quality |
| connective tissue | UBERON:0002384 | 95.83 | gold quality |
| peritoneum | UBERON:0002358 | 95.80 | gold quality |
| gingival epithelium | UBERON:0001949 | 95.78 | gold quality |
| bone element | UBERON:0001474 | 95.60 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 95.25 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 95.20 | gold quality |
| gingiva | UBERON:0001828 | 95.16 | gold quality |
| liver | UBERON:0002107 | 95.15 | gold quality |
| esophagus mucosa | UBERON:0002469 | 95.11 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 95.00 | gold quality |
| amniotic fluid | UBERON:0000173 | 94.06 | gold quality |
| granulocyte | CL:0000094 | 94.01 | gold quality |
| ectocervix | UBERON:0012249 | 93.95 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 93.91 | gold quality |
| right lung | UBERON:0002167 | 93.79 | gold quality |
| spleen | UBERON:0002106 | 93.61 | gold quality |
| vagina | UBERON:0000996 | 93.05 | gold quality |
| squamous epithelium | UBERON:0006914 | 92.66 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 92.48 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 92.47 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-11121 | yes | 230.90 |
| E-MTAB-6701 | yes | 46.25 |
| E-GEOD-135922 | yes | 19.87 |
| E-MTAB-9067 | yes | 10.14 |
| E-MTAB-9801 | yes | 9.81 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
21 targeting PYGL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-888-5P | 99.30 | 70.15 | 1855 |
| HSA-MIR-1257 | 98.97 | 68.02 | 1133 |
| HSA-MIR-6796-3P | 98.68 | 65.49 | 689 |
| HSA-MIR-3613-5P | 98.40 | 68.91 | 604 |
| HSA-MIR-5000-5P | 97.40 | 66.11 | 1055 |
| HSA-MIR-514A-3P | 96.43 | 67.77 | 1048 |
| HSA-MIR-514B-3P | 96.43 | 67.77 | 1048 |
Literature-anchored findings (GeneRIF, showing 12)
- A novel role for Strip/Cka in JNK pathway regulation during spermatogenesis within the developing Drosophila testis. (PMID:31164352)
- Mob4/Cka/Mts functions as an intrinsic molecular switch coordinating Hippo and InR/PI3K/Akt pathways and enabling neural stem cells reactivation. (PMID:31167138)
- Susceptibility to excessive liver glycogen storage in patients with type 1 diabetes. (PMID:15223230)
- Deficiency of liver glycogen phosphorylase is predominantly the result of missense mutations affecting enzyme activity. There are no common mutations and the severity of clinical symptoms varies significantly. (PMID:17705025)
- The vitamin B6-regulated enzymes PYGL and G6PD fuel NADPH oxidases to promote skin inflammation. (PMID:32126244)
- Description of two GSD VI patients expanding the spectrum of PYGL mutations. (PMID:32268899)
- Glycogen storage disease type VI can progress to cirrhosis: ten Chinese patients with GSD VI and a literature review. (PMID:32892177)
- Glycogen storage disease type VI with a novel PYGL mutation: Two case reports and literature review. (PMID:33879691)
- Long noncoding RNA KCNMB2-AS1 promotes the development of esophageal cancer by modulating the miR-3194-3p/PYGL axis. (PMID:34516362)
- Human hair follicles operate an internal Cori cycle and modulate their growth via glycogen phosphorylase. (PMID:34675331)
- Identification of PYGL as a key prognostic gene of glioma by integrated bioinformatics analysis. (PMID:35037470)
- miR-155-5p regulates hypoxia-induced pulmonary artery smooth muscle cell function by targeting PYGL. (PMID:35611851)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pygl | ENSDARG00000002197 |
| mus_musculus | Pygl | ENSMUSG00000021069 |
| rattus_norvegicus | Pygl | ENSRNOG00000006388 |
| drosophila_melanogaster | Glyp | FBGN0004507 |
| caenorhabditis_elegans | WBGENE00020696 |
Paralogs (2): PYGM (ENSG00000068976), PYGB (ENSG00000100994)
Protein
Protein identifiers
Glycogen phosphorylase, liver form — P06737 (reviewed: P06737)
All UniProt accessions (2): P06737, E9PK47
UniProt curated annotations — full annotation on UniProt →
Function. Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.
Subunit / interactions. Homodimer; enzymatically active. Interacts with PPP1R3B; recruits the phosphatase PP1 which dephosphorylates and inactivates PYGL/glycogen phosphorylase.
Subcellular location. Cytoplasm. Cytosol.
Post-translational modifications. Acetylation, which is up-regulated by glucose and insulin and down-regulated by glucagon, inhibits the glycogen phosphorylase activity by promoting PPP1R3B-mediated recruitment of phosphatase PP1 and Ser-15 dephosphorylation. Phosphorylation at Ser-15 converts inactive phosphorylase b into active phosphorylase a. Dephosphorylation of Ser-15 by phosphatase PP1 inactivates the enzyme.
Disease relevance. Glycogen storage disease 6 (GSD6) [MIM:232700] A metabolic disorder characterized by mild to moderate hypoglycemia, mild ketosis, growth retardation, and prominent hepatomegaly. Heart and skeletal muscle are not affected. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Allosterically regulated through the non-covalent binding of metabolites, being activated by AMP and inhibited by ATP, ADP, and glucose-6-phosphate. The activity is also controlled by post-translational modifications including phosphorylation and acetylation.
Similarity. Belongs to the glycogen phosphorylase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P06737-1 | 1 | yes |
| P06737-2 | 2 |
RefSeq proteins (2): NP_001157412, NP_002854* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000811 | Glyco_trans_35 | Family |
| IPR011833 | Glycg_phsphrylas | Family |
| IPR035090 | Pyridoxal_P_attach_site | Conserved_site |
Pfam: PF00343
Enzyme classification (BRENDA):
- EC 2.4.1.1 — glycogen phosphorylase (BRENDA: 72 organisms, 328 substrates, 721 inhibitors, 318 Km, 78 kcat entries)
Substrate kinetics (BRENDA)
31 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| PHOSPHATE | 0.45–100 | 53 |
| GLUCOSE 1-PHOSPHATE | 0.05–20 | 39 |
| GLYCOGEN | 0.0138–40 | 23 |
| MALTOHEPTAOSE | 0.08–39.86 | 22 |
| MALTOTETRAOSE | 0.28–53 | 22 |
| MALTOPENTAOSE | 0.11–280 | 19 |
| STARCH | 0.013–15.5 | 16 |
| ALPHA-D-GLUCOSE 1-PHOSPHATE | 0.054–22 | 14 |
| MALTOHEXAOSE | 0.16–32 | 12 |
| MALTOTRIOSE | 0.3–70 | 11 |
| AMP | — | 9 |
| D-GLUCOSE-1-PHOSPHATE | 0.33–0.96 | 8 |
| AMYLOSE | 0.71–20 | 6 |
| AMYLOPECTIN | 0.0046–0.03 | 5 |
| SOLUBLE STARCH | 0.0106–0.15 | 4 |
Catalyzed reactions (Rhea), 1 shown:
- (1->4)-alpha-D-glucosyl + phosphate = (1->4)-alpha-D-glucosyl + alpha-D-glucose 1-phosphate (RHEA:41732)
UniProt features (128 total): helix 48, strand 32, modified residue 9, turn 9, sequence variant 9, sequence conflict 8, mutagenesis site 4, binding site 3, site 3, initiator methionine 1, chain 1, splice variant 1
Structure
Experimental structures (PDB)
19 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3DDS | X-RAY DIFFRACTION | 1.8 |
| 2ATI | X-RAY DIFFRACTION | 1.9 |
| 3DDW | X-RAY DIFFRACTION | 1.9 |
| 1L5R | X-RAY DIFFRACTION | 2.1 |
| 1L5S | X-RAY DIFFRACTION | 2.1 |
| 1XOI | X-RAY DIFFRACTION | 2.1 |
| 1EM6 | X-RAY DIFFRACTION | 2.2 |
| 1L5Q | X-RAY DIFFRACTION | 2.25 |
| 1L7X | X-RAY DIFFRACTION | 2.3 |
| 1EXV | X-RAY DIFFRACTION | 2.4 |
| 1FA9 | X-RAY DIFFRACTION | 2.4 |
| 1FC0 | X-RAY DIFFRACTION | 2.4 |
| 2ZB2 | X-RAY DIFFRACTION | 2.45 |
| 3CEM | X-RAY DIFFRACTION | 2.47 |
| 2QLL | X-RAY DIFFRACTION | 2.56 |
| 3DD1 | X-RAY DIFFRACTION | 2.57 |
| 8EMS | ELECTRON MICROSCOPY | 2.65 |
| 3CEH | X-RAY DIFFRACTION | 2.8 |
| 3CEJ | X-RAY DIFFRACTION | 3.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P06737-F1 | 92.87 | 0.87 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 109 (involved in the association of subunits); 143 (involved in the association of subunits); 156 (may be involved in allosteric control)
Ligand- & substrate-binding residues (3): 43–45; 76; 310
Post-translational modifications (9): 364, 470, 524, 561, 639, 681, 796, 2, 15
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 470 | decreased glycogen phosphorylase activity. |
| 470 | decreased acetylation; when associated with r-796. |
| 796 | decreased glycogen phosphorylase activity. |
| 796 | decreased acetylation; when associated with r-470. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-70221 | Glycogen breakdown (glycogenolysis) |
MSigDB gene sets: 307 (showing top):
REACTOME_INNATE_IMMUNE_SYSTEM, MOOTHA_GLYCOGEN_METABOLISM, GOCC_SECRETORY_GRANULE, MODULE_151, MODULE_45, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MODULE_16, DOANE_BREAST_CANCER_CLASSES_DN, SHEPARD_BMYB_MORPHOLINO_DN, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_POLYSACCHARIDE_CATABOLIC_PROCESS, HSIAO_LIVER_SPECIFIC_GENES, GOBP_CARBOHYDRATE_METABOLIC_PROCESS, KEGG_STARCH_AND_SUCROSE_METABOLISM, BROWN_MYELOID_CELL_DEVELOPMENT_UP
GO Biological Process (6): glycogen metabolic process (GO:0005977), glycogen catabolic process (GO:0005980), response to bacterium (GO:0009617), glucose homeostasis (GO:0042593), necroptotic process (GO:0070266), carbohydrate metabolic process (GO:0005975)
GO Molecular Function (15): purine nucleobase binding (GO:0002060), ATP binding (GO:0005524), D-glucose binding (GO:0005536), glycogen phosphorylase activity (GO:0008184), AMP binding (GO:0016208), vitamin binding (GO:0019842), pyridoxal phosphate binding (GO:0030170), bile acid binding (GO:0032052), identical protein binding (GO:0042802), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), 1,4-alpha-oligoglucan phosphorylase activity (GO:0004645), protein binding (GO:0005515), transferase activity (GO:0016740), glycosyltransferase activity (GO:0016757)
GO Cellular Component (6): extracellular region (GO:0005576), cytoplasm (GO:0005737), cytosol (GO:0005829), secretory granule lumen (GO:0034774), extracellular exosome (GO:0070062), ficolin-1-rich granule lumen (GO:1904813)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
| Glycogen metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| adenyl ribonucleotide binding | 2 |
| anion binding | 2 |
| energy reserve metabolic process | 1 |
| glucan metabolic process | 1 |
| glycogen metabolic process | 1 |
| glucan catabolic process | 1 |
| response to other organism | 1 |
| carbohydrate homeostasis | 1 |
| programmed necrotic cell death | 1 |
| primary metabolic process | 1 |
| nucleobase binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| monosaccharide binding | 1 |
| 1,4-alpha-oligoglucan phosphorylase activity | 1 |
| cation binding | 1 |
| small molecule binding | 1 |
| vitamin B6 binding | 1 |
| monocarboxylic acid binding | 1 |
| protein binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| hexosyltransferase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| secretory granule | 1 |
| cytoplasmic vesicle lumen | 1 |
| extracellular vesicle | 1 |
| intracellular organelle lumen | 1 |
| ficolin-1-rich granule | 1 |
Protein interactions and networks
STRING
2499 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PYGL | GYS2 | P54840 | 960 |
| PYGL | AGL | P35573 | 801 |
| PYGL | UGP2 | Q16851 | 800 |
| PYGL | G6PC1 | P35575 | 791 |
| PYGL | G6PC3 | Q9BUM1 | 789 |
| PYGL | GCK | P35557 | 782 |
| PYGL | G6PC2 | Q9NQR9 | 782 |
| PYGL | GYS1 | P13807 | 778 |
| PYGL | GBE1 | Q04446 | 763 |
| PYGL | INS | P01308 | 760 |
| PYGL | H6PD | O95479 | 717 |
| PYGL | PPP1R3B | Q86XI6 | 682 |
| PYGL | LIPE | Q05469 | 675 |
| PYGL | GYG1 | P46976 | 666 |
| PYGL | G6PD | P11413 | 664 |
IntAct
81 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IKBKB | CHUK | psi-mi:“MI:0914”(association) | 0.960 |
| PYGB | PYGL | psi-mi:“MI:0915”(physical association) | 0.850 |
| PYGL | PYGB | psi-mi:“MI:0915”(physical association) | 0.850 |
| STBD1 | GABARAP | psi-mi:“MI:0914”(association) | 0.760 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| PPP1CA | CCDC85C | psi-mi:“MI:0914”(association) | 0.670 |
| CFTR | HAX1 | psi-mi:“MI:0914”(association) | 0.610 |
| PYGL | PYGM | psi-mi:“MI:0915”(physical association) | 0.560 |
| DCAF4L2 | CLUH | psi-mi:“MI:0914”(association) | 0.530 |
| HSPB8 | VWA8 | psi-mi:“MI:0914”(association) | 0.530 |
| ZFP41 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| PYGB | STBD1 | psi-mi:“MI:0914”(association) | 0.530 |
| PYGL | LRRFIP2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PYGL | BAG1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PYGL | IDH2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PYGL | HSD3B7 | psi-mi:“MI:0915”(physical association) | 0.370 |
| STAT1 | KPNA6 | psi-mi:“MI:0914”(association) | 0.350 |
| APBB1 | SSPOP | psi-mi:“MI:0914”(association) | 0.350 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (153): PYGL (Affinity Capture-MS), PYGL (Two-hybrid), PYGL (Affinity Capture-MS), PYGL (Affinity Capture-MS), PYGL (Affinity Capture-MS), GBE1 (Co-fractionation), PFKL (Co-fractionation), PFKP (Co-fractionation), PGK1 (Co-fractionation), PYGL (Co-fractionation), PYGL (Co-fractionation), PYGL (Co-fractionation), PYGL (Proximity Label-MS), PYGL (Proximity Label-MS), PYGL (Proximity Label-MS)
ESM2 similar proteins: A0A061AE05, A0QQV6, A1D858, A4YKV0, A5ETE1, A5VSQ0, A9CKA8, A9ILN1, A9M8Q9, B0CIS7, B2S877, B3QBB7, B6IUW0, B6JAC3, C0RFG8, O05877, P06737, P09811, P09824, P11216, P53534, P56862, Q07VC7, Q0V6P9, Q13EF2, Q1QQX2, Q21BY5, Q2J2R9, Q2YLS2, Q3B7M9, Q57AX5, Q5LSN8, Q5LU04, Q5LX16, Q5MIB6, Q5R5M6, Q6NCG2, Q83XD3, Q886D9, Q89XV1
Diamond homologs: O18751, O84250, P00489, P00490, P04045, P06737, P06738, P09811, P09812, P0AC86, P0AC87, P11216, P11217, P27598, P29849, P32811, P34114, P39123, P45180, P53534, P53535, P53536, P53537, P73511, P79334, Q00766, Q0VCM4, Q3B7M9, Q5MIB5, Q5MIB6, Q5R5M6, Q8CI94, Q8HXW4, Q9CN90, Q9ET01, Q9LIB2, Q9LKJ3, Q9PKE6, Q9SD76, Q9WUB3
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RIPK3 | up-regulates | PYGL | binding |
| CP-91149 | down-regulates | PYGL | “chemical inhibition” |
| PYGL | “down-regulates quantity” | glycogen | “chemical modification” |
| PYGL | “up-regulates quantity” | “alpha-D-glucose 1-phosphate(2-)” | “chemical modification” |
| PHKG1 | “up-regulates activity” | PYGL | phosphorylation |
| PHKG2 | “up-regulates activity” | PYGL | phosphorylation |
| PP1 | “down-regulates activity” | PYGL | dephosphorylation |
| OGT | “up-regulates activity” | PYGL | glycosylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 86 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of NF-kappaB in B cells | 5 | 16.4× | 1e-03 |
| FCERI mediated NF-kB activation | 6 | 15.6× | 8e-04 |
| CLEC7A (Dectin-1) signaling | 6 | 14.3× | 8e-04 |
| Downstream TCR signaling | 6 | 12.8× | 9e-04 |
| Interleukin-1 signaling | 6 | 12.4× | 9e-04 |
| PKR-mediated signaling | 5 | 11.8× | 2e-03 |
| ER-Phagosome pathway | 5 | 10.8× | 3e-03 |
| SARS-CoV-2 activates/modulates innate and adaptive immune responses | 6 | 8.9× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| autophagy | 8 | 12.1× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
452 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 43 |
| Likely pathogenic | 27 |
| Uncertain significance | 185 |
| Likely benign | 94 |
| Benign | 46 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1029651 | NM_002863.5(PYGL):c.528+2T>C | Pathogenic |
| 1070486 | NC_000014.8:g.(?51372090)(51411141_?)del | Pathogenic |
| 1076414 | NM_002863.5(PYGL):c.1726C>T (p.Arg576Ter) | Pathogenic |
| 11992 | NM_002863.5(PYGL):c.1768+1G>A | Pathogenic |
| 11993 | NM_002863.5(PYGL):c.529-1G>C | Pathogenic |
| 11995 | NM_002863.5(PYGL):c.1131C>G (p.Asn377Lys) | Pathogenic |
| 1298581 | NM_002863.5(PYGL):c.1099G>T (p.Glu367Ter) | Pathogenic |
| 1319173 | NM_002863.5(PYGL):c.1518+1del | Pathogenic |
| 1686118 | NM_002863.5(PYGL):c.1404-1G>A | Pathogenic |
| 1799523 | NM_002863.5(PYGL):c.198del (p.Arg67fs) | Pathogenic |
| 189242 | NM_002863.5(PYGL):c.25_44dup (p.Ser15fs) | Pathogenic |
| 1935779 | NM_002863.5(PYGL):c.1475G>A (p.Trp492Ter) | Pathogenic |
| 194379 | NM_002863.5(PYGL):c.1648dup (p.Leu550fs) | Pathogenic |
| 1987284 | NM_002863.5(PYGL):c.647G>A (p.Trp216Ter) | Pathogenic |
| 1988522 | NM_002863.5(PYGL):c.514C>T (p.Arg172Ter) | Pathogenic |
| 2075738 | NM_002863.5(PYGL):c.179_197del (p.Val60fs) | Pathogenic |
| 21327 | NM_002863.5(PYGL):c.1195C>T (p.Arg399Ter) | Pathogenic |
| 21337 | NM_002863.5(PYGL):c.280C>T (p.Arg94Ter) | Pathogenic |
| 21339 | NM_002863.5(PYGL):c.698G>A (p.Gly233Asp) | Pathogenic |
| 2148422 | NM_002863.5(PYGL):c.1964_1969+4delinsGAAAAA | Pathogenic |
| 2627510 | NM_002863.5(PYGL):c.528+1G>A | Pathogenic |
| 2815716 | NM_002863.5(PYGL):c.1228A>T (p.Lys410Ter) | Pathogenic |
| 3252330 | NM_002863.5(PYGL):c.773-2A>G | Pathogenic |
| 3346255 | NM_002863.5(PYGL):c.856dup (p.Glu288Ter) | Pathogenic |
| 3385228 | NM_002863.5(PYGL):c.730C>T (p.Leu244Phe) | Pathogenic |
| 3701206 | NM_002863.5(PYGL):c.1778_1781del (p.Lys593fs) | Pathogenic |
| 3720984 | NM_002863.5(PYGL):c.808C>T (p.Arg270Ter) | Pathogenic |
| 3727125 | NM_002863.5(PYGL):c.324del (p.Cys109fs) | Pathogenic |
| 3772160 | NM_002863.5(PYGL):c.702C>G (p.Tyr234Ter) | Pathogenic |
| 38367 | NM_002863.5(PYGL):c.1016A>G (p.Asn339Ser) | Pathogenic |
SpliceAI
4910 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:50872274:CTGCG:C | donor_gain | 1.0000 |
| 14:50872275:TGCG:T | donor_gain | 1.0000 |
| 14:50872276:GCG:G | donor_gain | 1.0000 |
| 14:50872276:GCGG:G | donor_gain | 1.0000 |
| 14:50872277:CG:C | donor_gain | 1.0000 |
| 14:50872277:CGGT:C | donor_loss | 1.0000 |
| 14:50872278:GG:G | donor_gain | 1.0000 |
| 14:50872278:GGT:G | donor_loss | 1.0000 |
| 14:50872279:G:GG | donor_gain | 1.0000 |
| 14:50872279:GTGA:G | donor_loss | 1.0000 |
| 14:50872280:T:G | donor_loss | 1.0000 |
| 14:50872281:GAGTA:G | donor_loss | 1.0000 |
| 14:50881581:A:AG | acceptor_gain | 1.0000 |
| 14:50881582:A:G | acceptor_gain | 1.0000 |
| 14:50888816:A:AG | acceptor_gain | 1.0000 |
| 14:50888817:T:G | acceptor_gain | 1.0000 |
| 14:50888821:A:AG | acceptor_gain | 1.0000 |
| 14:50888821:AAG:A | acceptor_gain | 1.0000 |
| 14:50888822:A:G | acceptor_gain | 1.0000 |
| 14:50888875:TTGC:T | donor_gain | 1.0000 |
| 14:50888899:TAAAG:T | donor_loss | 1.0000 |
| 14:50888900:AAAG:A | donor_loss | 1.0000 |
| 14:50888901:AAGG:A | donor_loss | 1.0000 |
| 14:50888902:AGGTG:A | donor_loss | 1.0000 |
| 14:50888903:GG:G | donor_loss | 1.0000 |
| 14:50888905:T:A | donor_loss | 1.0000 |
| 14:50901826:TAG:T | acceptor_loss | 1.0000 |
| 14:50901827:A:AG | acceptor_gain | 1.0000 |
| 14:50901827:AGA:A | acceptor_loss | 1.0000 |
| 14:50901828:G:GG | acceptor_gain | 1.0000 |
AlphaMissense
5630 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:50912199:C:A | K575N | 1.000 |
| 14:50912199:C:G | K575N | 1.000 |
| 14:50912200:T:A | K575M | 1.000 |
| 14:50914745:A:G | W492R | 1.000 |
| 14:50914745:A:T | W492R | 1.000 |
| 14:50915902:A:G | W388R | 1.000 |
| 14:50915902:A:T | W388R | 1.000 |
| 14:50931700:G:C | F167L | 1.000 |
| 14:50931700:G:T | F167L | 1.000 |
| 14:50931702:A:G | F167L | 1.000 |
| 14:50905460:A:G | W826R | 0.999 |
| 14:50905460:A:T | W826R | 0.999 |
| 14:50905489:C:G | R816P | 0.999 |
| 14:50905494:A:C | S814R | 0.999 |
| 14:50905494:A:T | S814R | 0.999 |
| 14:50905496:T:G | S814R | 0.999 |
| 14:50905500:G:C | F812L | 0.999 |
| 14:50905500:G:T | F812L | 0.999 |
| 14:50905502:A:G | F812L | 0.999 |
| 14:50910015:C:T | G686E | 0.999 |
| 14:50910016:C:A | G686W | 0.999 |
| 14:50910029:C:A | K681N | 0.999 |
| 14:50910029:C:G | K681N | 0.999 |
| 14:50910031:T:C | K681E | 0.999 |
| 14:50910035:A:C | N679K | 0.999 |
| 14:50910035:A:T | N679K | 0.999 |
| 14:50910046:C:A | G676W | 0.999 |
| 14:50911867:G:T | A611D | 0.999 |
| 14:50911870:G:T | A610D | 0.999 |
| 14:50912197:C:G | R576P | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000072939 (14:50943652 C>G,T), RS1000119603 (14:50930773 A>C), RS1000146278 (14:50943468 G>A), RS1000152292 (14:50934671 ATG>A,ATGTG), RS1000160174 (14:50925125 G>A), RS1000173865 (14:50930410 G>T), RS1000257515 (14:50934483 T>A), RS1000346242 (14:50925160 C>T), RS1000347948 (14:50928420 C>A), RS1000399635 (14:50921537 G>A), RS1000504546 (14:50919114 C>T), RS1000576563 (14:50921704 A>C), RS1000628784 (14:50922002 T>C), RS1000711044 (14:50937383 A>T), RS1000740925 (14:50912810 C>A,T)
Disease associations
OMIM: gene MIM:613741 | disease phenotypes: MIM:232700, MIM:232200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| glycogen storage disease VI | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| glycogen storage disease VI | Definitive | AR |
Mondo (2): glycogen storage disease VI (MONDO:0009294), disorder of glycogen metabolism (MONDO:0002412)
Orphanet (2): Glycogen storage disease due to liver glycogen phosphorylase deficiency (Orphanet:369), Glycogen storage disease (Orphanet:79201)
HPO phenotypes
34 total (30 of 34 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000077 | Abnormality of the kidney |
| HP:0000093 | Proteinuria |
| HP:0000737 | Irritability |
| HP:0000823 | Delayed puberty |
| HP:0000938 | Osteopenia |
| HP:0000939 | Osteoporosis |
| HP:0001252 | Hypotonia |
| HP:0001270 | Motor delay |
| HP:0001394 | Cirrhosis |
| HP:0001395 | Hepatic fibrosis |
| HP:0001402 | Hepatocellular carcinoma |
| HP:0001508 | Failure to thrive |
| HP:0001510 | Growth delay |
| HP:0001531 | Failure to thrive in infancy |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001943 | Hypoglycemia |
| HP:0001946 | Ketosis |
| HP:0002155 | Hypertriglyceridemia |
| HP:0002240 | Hepatomegaly |
| HP:0002360 | Sleep disturbance |
| HP:0002910 | Elevated circulating hepatic transaminase concentration |
| HP:0003077 | Hyperlipidemia |
| HP:0003124 | Hypercholesterolemia |
| HP:0003270 | Abdominal distention |
| HP:0003710 | Exercise-induced muscle cramps |
| HP:0004322 | Short stature |
| HP:0004913 | Intermittent lactic acidemia |
| HP:0006568 | Increased hepatic glycogen content |
| HP:0006580 | Portal fibrosis |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001693_4 | Acute lymphoblastic leukemia (childhood) | 7.000000e-09 |
| GCST002211_4 | Psychosis (atypical) | 8.000000e-07 |
| GCST006585_2675 | Blood protein levels | 3.000000e-06 |
| GCST012204_1 | Rectal cancer | 5.000000e-09 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006008 | Glycogen Storage Disease | C16.320.565.202.449; C18.452.648.202.449 |
| D006013 | Glycogen Storage Disease Type VI | C16.320.565.202.449.580; C18.452.648.202.449.580 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2568 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
3 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 102,674 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL428690 | ALVOCIDIB | 3 | 27,781 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL206468 | AFEGOSTAT | 2 | 334 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs7142143 | Efficacy | 3 | asparaginase;dexamethasone;methotrexate | Acute lymphoblastic leukemia |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs7142143 | PYGL | 3 | 0.00 | 1 | asparaginase;dexamethasone;methotrexate |
Binding affinities (BindingDB)
99 measured of 104 human assays (104 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| 2,3-dichloro-N-{1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-4H-thieno[3,2-b]pyrrole-5-carboxamide | IC50 | 2 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(4-methoxyphenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 3 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[2-({[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoyl}amino)-4-(3-fluorophenyl)phenyl]formamido}butanoic acid | IC50 | 3 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[2-({[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoyl}amino)-4-fluorophenyl]formamido}butanoic acid | IC50 | 4 nM |
| (2S,3R)-3-(tert-butoxy)-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-(4-methoxyphenyl)phenyl)formamido]butanoic acid | IC50 | 4 nM |
| (2S,3R)-3-(tert-butoxy)-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-(3-fluorophenyl)phenyl)formamido]butanoic acid | IC50 | 4 nM |
| CP-526,423 | IC50 | 6 nM |
| 2,3-dichloro-N-[1-(2-hydroxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide | IC50 | 7 nM |
| (2S,3R)-3-(tert-butoxy)-2-[(3-{[(2,4,6-trimethylphenyl)carbamoyl]amino}naphthalen-2-yl)formamido]butanoic acid | IC50 | 7 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(4-fluorophenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 7 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(3,4-difluorophenyl)-2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 7 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(3-methoxyphenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 8 nM |
| (2S,3R)-3-(tert-butoxy)-2-[(4-phenyl-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl)formamido]butanoic acid | IC50 | 10 nM |
| (2S,3R)-3-(tert-butoxy)-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-fluorophenyl)formamido]butanoic acid | IC50 | 10 nM |
| 2-chloro-N-[(3S)-1-[(2S)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 12 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(3,4-difluorophenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 13 nM |
| (2S)-2-cyclohexyl-2-{[2-({[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoyl}amino)-4-fluorophenyl]formamido}acetic acid | IC50 | 13 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(3-fluorophenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 15 nM |
| 5-chloro-N-[1-(2-hydroxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-1H-indole-2-carboxamide | IC50 | 17 nM |
| (2S)-2-cyclohexyl-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-fluorophenyl)formamido]acetic acid | IC50 | 19 nM |
| indole-2-carboxamide derivative, 25e (R-isomer) | IC50 | 20 nM |
| 2-chloro-N-[1-(3-hydroxypropyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 21 nM |
| 2-chloro-N-[(3R)-1-[(2S)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 21 nM |
| 2-chloro-N-[1-(2-hydroxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 26 nM |
| 2-chloro-N-[(3S)-1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 27 nM |
| 2-chloro-N-[1-(cyanomethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 28 nM |
| (2S,3R)-3-(tert-butoxy)-2-{[4-(2-methoxyphenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acid | IC50 | 28 nM |
| 2-chloro-N-{1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 29 nM |
| indole-2-carboxamide derivative, 25e | IC50 | 36 nM |
| 2,3-dichloro-N-{1-[3-hydroxy-2-(hydroxymethyl)propyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-4H-thieno[3,2-b]pyrrole-5-carboxamide | IC50 | 38 nM |
| 2-chloro-N-[(3R)-1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 40 nM |
| 2-chloro-N-(2-oxo-1,2,3,4-tetrahydroquinolin-3-yl)-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 41 nM |
| 2-chloro-N-[1-(2-hydroxybutyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 44 nM |
| 5-chloro-N-{1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-1H-indole-2-carboxamide | IC50 | 44 nM |
| 1-{(S)-2-[(5-Chloro-1H-indole-2-carbonyl)-amino]-3-phenyl-propionyl}-azetidine-3-carboxylic acid | IC50 | 45 nM |
| 2-chloro-N-[1-(2-methanesulfinylethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 48 nM |
| indole-2-carboxamide derivative, 25d | IC50 | 48 nM |
| (2S)-2-[(2-{[(4-butyl-2,6-dimethylphenyl)carbamoyl]amino}-4-fluorophenyl)formamido]-2-cyclohexylacetic acid | IC50 | 49 nM |
| 2-chloro-N-[1-(2-methoxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 50 nM |
| 2-chloro-N-{1-[3-hydroxy-2-(hydroxymethyl)propyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 60 nM |
| 2-chloro-N-[1-(2-methanesulfonylethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 63 nM |
| 2-[3-({2,3-dichloro-4H-thieno[3,2-b]pyrrole-5-}amido)-2-oxo-1,2,3,4-tetrahydroquinolin-1-yl]acetic acid | IC50 | 63 nM |
| indole-2-carboxamide derivative, 25c | IC50 | 63 nM |
| 5-chloro-N-{1-[3-hydroxy-2-(hydroxymethyl)propyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-1H-indole-2-carboxamide | IC50 | 66 nM |
| indole-2-carboxamide derivative, 15 | IC50 | 68 nM |
| (2S)-2-[(3-{[(2-chloro-6-methylphenyl)carbamoyl]amino}naphthalen-2-yl)formamido]-2-cyclohexylacetic acid | IC50 | 73 nM |
| 2-chloro-N-{1-[(N’-hydroxycarbamimidoyl)methyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 75 nM |
| 2-chloro-N-{1-[(methylcarbamoyl)methyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 79 nM |
| 2-chloro-N-[2-oxo-1-(2-oxobutyl)-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | IC50 | 84 nM |
| methyl 2-[3-({2-chloro-6H-thieno[2,3-b]pyrrole-5-}amido)-2-oxo-1,2,3,4-tetrahydroquinolin-1-yl]acetate | IC50 | 84 nM |
ChEMBL bioactivities
666 potent at pChembl≥5 of 715 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.00 | IC50 | 1 | nM | CHEMBL134802 |
| 9.00 | IC50 | 1 | nM | CHEMBL133911 |
| 8.70 | IC50 | 2 | nM | CHEMBL394526 |
| 8.70 | IC50 | 2 | nM | CHEMBL440528 |
| 8.70 | IC50 | 2 | nM | CHEMBL133832 |
| 8.70 | IC50 | 2 | nM | CHEMBL115651 |
| 8.62 | Kd | 2.394 | nM | CHEMBL3752910 |
| 8.62 | ED50 | 2.394 | nM | CHEMBL3752910 |
| 8.52 | IC50 | 3 | nM | CHEMBL471266 |
| 8.52 | IC50 | 3 | nM | CHEMBL458655 |
| 8.52 | IC50 | 3 | nM | CHEMBL132191 |
| 8.40 | IC50 | 4 | nM | CHEMBL459792 |
| 8.40 | IC50 | 4 | nM | CHEMBL506011 |
| 8.40 | IC50 | 4 | nM | CHEMBL449986 |
| 8.40 | IC50 | 4 | nM | CHEMBL133274 |
| 8.40 | IC50 | 4 | nM | CHEMBL115341 |
| 8.30 | IC50 | 5 | nM | CHEMBL217994 |
| 8.30 | IC50 | 5 | nM | CHEMBL480195 |
| 8.30 | IC50 | 5 | nM | CHEMBL481534 |
| 8.30 | IC50 | 5 | nM | CHEMBL423509 |
| 8.22 | IC50 | 6 | nM | CHEMBL434025 |
| 8.22 | IC50 | 6 | nM | CHEMBL472140 |
| 8.22 | IC50 | 6 | nM | CHEMBL474193 |
| 8.15 | IC50 | 7 | nM | CHEMBL395733 |
| 8.15 | IC50 | 7 | nM | CHEMBL473851 |
| 8.15 | IC50 | 7 | nM | CHEMBL472292 |
| 8.15 | IC50 | 7 | nM | CHEMBL443938 |
| 8.10 | IC50 | 8 | nM | CHEMBL479920 |
| 8.10 | IC50 | 7.88 | nM | CHEMBL113736 |
| 8.10 | IC50 | 8 | nM | CHEMBL113762 |
| 8.05 | IC50 | 9 | nM | CHEMBL219059 |
| 8.05 | IC50 | 9 | nM | CHEMBL516081 |
| 8.04 | IC50 | 9.1 | nM | CHEMBL114226 |
| 8.00 | IC50 | 10 | nM | CHEMBL482146 |
| 8.00 | IC50 | 10 | nM | CHEMBL471469 |
| 8.00 | IC50 | 10 | nM | CHEMBL473486 |
| 8.00 | IC50 | 10 | nM | CHEMBL133923 |
| 8.00 | IC50 | 10 | nM | CHEMBL132640 |
| 7.96 | IC50 | 11 | nM | CHEMBL133603 |
| 7.96 | IC50 | 11 | nM | CHEMBL114731 |
| 7.96 | IC50 | 10.9 | nM | CHEMBL326950 |
| 7.92 | IC50 | 12 | nM | CHEMBL179485 |
| 7.92 | IC50 | 12 | nM | CHEMBL396724 |
| 7.92 | IC50 | 12 | nM | CHEMBL488273 |
| 7.92 | IC50 | 12 | nM | CHEMBL337224 |
| 7.91 | IC50 | 12.4 | nM | CHEMBL114846 |
| 7.89 | IC50 | 13 | nM | CHEMBL519796 |
| 7.89 | IC50 | 13 | nM | CHEMBL512725 |
| 7.89 | IC50 | 13 | nM | CHEMBL474098 |
| 7.89 | IC50 | 13 | nM | CHEMBL133114 |
PubChem BioAssay actives
762 with measured affinity, of 1146 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-[3-fluoro-2-[(4-nitropyridine-2-carbonyl)amino]phenoxy]phthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0010 | uM |
| 4-[3-[(4-nitropyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0010 | uM |
| 2,3-dichloro-N-[1-[(2R)-2,3-dihydroxypropyl]-2-oxo-3,4-dihydroquinolin-3-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide | 1798432: Enzyme Inhibition Assay from Article 10.1016/j.bmcl.2006.10.037: “Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.” | ic50 | 0.0020 | uM |
| 4-(2-chlorophenyl)-1-[(4-chlorophenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0020 | uM |
| 4-[3-[(4-chloropyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0020 | uM |
| 4-[3-[(4-methoxypyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0020 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149160: Binding affinity to human PYGL incubated for 45 mins by Kinobead based pull down assay | kd | 0.0024 | uM |
| (2S,3R)-2-[[2-[[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoylamino]-4-(3-fluorophenyl)benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0030 | uM |
| (2S,3R)-2-[[4-(4-methoxyphenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0030 | uM |
| 4-[2-[(4-nitropyridine-2-carbonyl)amino]phenoxy]phthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0030 | uM |
| (2S,3R)-2-[[2-[[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoylamino]-4-fluorobenzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0040 | uM |
| (2S,3R)-2-[[2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]-4-(4-methoxyphenyl)benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0040 | uM |
| (2S,3R)-2-[[2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]-4-(3-fluorophenyl)benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0040 | uM |
| 4-[3-[(4-ethylpyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0040 | uM |
| 4-(2-chlorophenyl)-1-[(3,4-dimethoxyphenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0040 | uM |
| 1-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]cyclooctane-1-carboxylic acid | 367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucose | ic50 | 0.0050 | uM |
| 4-(2-chlorophenyl)-6-methyl-1-[(3-nitrophenyl)methyl]-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0050 | uM |
| 2,3-dichloro-N-[(2S)-1-(dimethylamino)-1-oxo-3-phenylpropan-2-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide | 276334: Inhibition of recombinant human liver GPa by multienzyme coupled assay | ic50 | 0.0050 | uM |
| (2S)-2-cyclohexyl-2-[[3-[[2,6-dichloro-4-(trifluoromethoxy)phenyl]carbamoylamino]naphthalene-2-carbonyl]amino]acetic acid | 367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucose | ic50 | 0.0050 | uM |
| 5-chloro-N-[2-[2-[2-[(5-chloro-1H-indole-2-carbonyl)amino]ethoxy]ethoxy]ethyl]-1H-indole-2-carboxamide | 1186739: Inhibition of glycogen phosphorylase a (unknown origin) | ic50 | 0.0060 | uM |
| (2S)-2-cyclohexyl-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]acetic acid | 367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucose | ic50 | 0.0060 | uM |
| (2S,3R)-3-(1-methylcyclopentyl)oxy-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]butanoic acid | 367036: Inhibition of human liver glycogen phosphorylase A by fluorescence plate reader assay | ic50 | 0.0060 | uM |
| N-[2-[2-[2-[(5-chloro-1H-indole-2-carbonyl)amino]ethoxy]ethoxy]ethyl]-5-methyl-1H-indole-2-carboxamide | 1799470: Inhibition Activity Assay from Article 10.1016/S1074-5521(00)00004-1: “Human liver glycogen phosphorylase inhibitors bind at a new allosteric site.” | ic50 | 0.0060 | uM |
| 2,3-dichloro-N-[1-(2-hydroxyethyl)-2-oxo-3,4-dihydroquinolin-3-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide | 1798432: Enzyme Inhibition Assay from Article 10.1016/j.bmcl.2006.10.037: “Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.” | ic50 | 0.0070 | uM |
| (2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0070 | uM |
| (2S,3R)-2-[[4-(4-fluorophenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0070 | uM |
| (2S,3R)-2-[[4-(3,4-difluorophenyl)-2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0070 | uM |
| 4-(2-chlorophenyl)-1-ethyl-6-methyl-5-(2-methylpropylcarbamoyl)-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0079 | uM |
| (2S,3R)-2-[[4-(3-methoxyphenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0080 | uM |
| 4-(2-chlorophenyl)-1-[(3-chlorophenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0080 | uM |
| (2S)-5-methyl-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]hexanoic acid | 367036: Inhibition of human liver glycogen phosphorylase A by fluorescence plate reader assay | ic50 | 0.0090 | uM |
| 2,3-dichloro-N-[(1R,2R)-1-hydroxy-2,3-dihydro-1H-inden-2-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide | 276334: Inhibition of recombinant human liver GPa by multienzyme coupled assay | ic50 | 0.0090 | uM |
| 4-(2-chlorophenyl)-1-ethyl-6-methyl-5-(propan-2-ylcarbamoyl)-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0091 | uM |
| (2S)-2-cyclohexyl-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]propanoic acid | 367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucose | ic50 | 0.0100 | uM |
| (2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-[[4-phenyl-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0100 | uM |
| (2S,3R)-2-[[2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]-4-fluorobenzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0100 | uM |
| 4-[3-[(4-methylpyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0100 | uM |
| 4-[2-[(4-chloropyridine-2-carbonyl)amino]-3-fluorophenoxy]phthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0100 | uM |
| 5-(benzylcarbamoyl)-4-(2-chlorophenyl)-1-ethyl-6-methyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0109 | uM |
| 1-benzyl-4-(2-chlorophenyl)-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0110 | uM |
| 4-[3-fluoro-2-[(4-methoxypyridine-2-carbonyl)amino]phenoxy]phthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0110 | uM |
| 2-chloro-N-[(3S)-1-[(2S)-2,3-dihydroxypropyl]-2-oxo-3,4-dihydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide | 1798432: Enzyme Inhibition Assay from Article 10.1016/j.bmcl.2006.10.037: “Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.” | ic50 | 0.0120 | uM |
| 4-[3-[[4-(trifluoromethyl)pyridine-2-carbonyl]amino]naphthalen-2-yl]oxyphthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0120 | uM |
| 5-chloro-N-[2-[(1,1-dioxothian-4-yl)-(2-hydroxyethyl)amino]-2-oxoethyl]-1H-indole-2-carboxamide | 240837: Inhibitory concentration against glycogen phosphorylase | ic50 | 0.0120 | uM |
| (E)-3-(3,4-dichlorophenyl)-N-[2-[2-[[(E)-3-(3,4-dichlorophenyl)prop-2-enoyl]amino]ethylsulfanyl]ethyl]prop-2-enamide | 409747: Inhibition of human liver glycogen phosphorylase a in presence of glucose | ic50 | 0.0120 | uM |
| 4-(2-chlorophenyl)-1-ethyl-5-(ethylcarbamoyl)-6-methyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0124 | uM |
| (2S,3R)-2-[[4-(3,4-difluorophenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0130 | uM |
| (2S)-2-cyclohexyl-2-[[2-[[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoylamino]-4-fluorobenzoyl]amino]acetic acid | 1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.” | ic50 | 0.0130 | uM |
| 4-(2-chlorophenyl)-1-[(3,4-dichlorophenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid | 101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa) | ic50 | 0.0130 | uM |
| 4-[4-fluoro-2-[(4-nitropyridine-2-carbonyl)amino]phenoxy]phthalic acid | 73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase) | ic50 | 0.0130 | uM |
CTD chemical–gene interactions
68 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 8 |
| Cisplatin | decreases expression, increases expression | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| methylmercuric chloride | decreases expression | 2 |
| bisphenol A | decreases expression, increases expression | 2 |
| chloropicrin | increases expression, decreases expression | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| bisphenol F | increases expression | 1 |
| chloroacetaldehyde | affects expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| baicalein | decreases activity | 1 |
| sodium arsenate | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression, decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| potassium chromate(VI) | increases expression | 1 |
| benzamide | decreases activity | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| alvocidib | affects binding | 1 |
| vanillin | affects binding | 1 |
| acyline | increases expression | 1 |
| entinostat | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| procyanidin B1 | affects cotreatment, decreases activity | 1 |
| nutlin 3 | affects cotreatment, increases expression, increases secretion | 1 |
| bisphenol B | increases expression | 1 |
| p-coumaric acid | affects cotreatment, decreases activity | 1 |
| abrine | decreases expression | 1 |
ChEMBL screening assays
58 unique, capped per target: 58 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1027304 | Binding | Inhibition of human liver glycogen phosphorylase a by coupled kinetic fluorescent intensity assay | Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
32 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02782741 | PHASE3 | COMPLETED | Study to Compare the Efficacy and Safety of Enzyme Replacement Therapies Avalglucosidase Alfa and Alglucosidase Alfa Administered Every Other Week in Patients With Late-onset Pompe Disease Who Have Not Been Previously Treated for Pompe Disease |
| NCT04808505 | PHASE3 | RECRUITING | A Study to Evaluate the Safety, Efficacy, PK, PD and Immunogenicity of Cipaglucosidase Alfa/Miglustat in IOPD Subjects Aged 0 to <18 |
| NCT00765414 | PHASE2 | COMPLETED | Extension Study of Long-term Safety and Efficacy of Myozyme for a Single Patient With Pompe Disease Who Were Previously Enrolled in Genzyme Sponsored ERT Studies. |
| NCT02032524 | PHASE2 | COMPLETED | Avalglucosidase Alfa Extension Study |
| NCT03019406 | PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Assess Safety and Efficacy of Avalglucosidase Alfa Administered Every Other Week in Pediatric Patients With Infantile-onset Pompe Disease Previously Treated With Alglucosidase Alfa |
| NCT06130228 | PHASE2 | UNKNOWN | Nutritional Therapy in Late-onset Pompe Disease |
| NCT02385162 | Not specified | WITHDRAWN | Biomarker for Glycogen Storage Diseases (BioGlycogen) |
| NCT04454216 | Not specified | RECRUITING | GSD VI and GSD IX Natural History |
| NCT05095727 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Study of mRNA-3745 in Adult and Pediatric Participants With Glycogen Storage Disease Type 1a (GSD1a) |
| NCT00001342 | Not specified | COMPLETED | Study of Glycogen Storage Disease and Associated Disorders |
| NCT00566878 | Not specified | COMPLETED | Pompe Lactation Sub-Registry |
| NCT01461304 | Not specified | NO_LONGER_AVAILABLE | Compassionate Use of Triheptanoin (C7) for Inherited Disorders of Energy Metabolism |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT02057731 | Not specified | COMPLETED | Study of Glycogen Storage Disease Expression in Carriers |
| NCT02176096 | Not specified | COMPLETED | Comparison of the Effect of a Novel Starch (Glycosade) Versus Gastrostomy Tube-Dextrose Infusion on Overnight Euglycaemia Control in Children With Glycogen Storage Disease Type I: Open Label Demonstration Trial |
| NCT02318966 | Not specified | COMPLETED | Glycosade v UCCS in the Dietary Management of Hepatic GSD |
| NCT02338817 | Not specified | TERMINATED | Clinical Evaluation of a Non-Invasive Hypoglycemia Detector in a Glycogen Storage Disease Population |
| NCT03255213 | Not specified | COMPLETED | Lingual Muscle Training in Late-Onset Pompe Disease (LOPD) |
| NCT03564561 | Not specified | RECRUITING | Natural History of Pompe Disease |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT04292938 | Not specified | COMPLETED | McArdle Disease Treatment by Ketogenic Diet |
| NCT04399694 | Not specified | COMPLETED | Identification and Characterization of Novel Non-Coding Variants That Contribute to Genetic Disorders |
| NCT04929002 | Not specified | ACTIVE_NOT_RECRUITING | Carbon-13 Magnetic Resonance Spectroscopy in Glycogen Storage Diseases |
| NCT05199246 | Not specified | COMPLETED | Assessment of Safety and Acute Effects of a Lower-limb Powered Dermoskeleton in Patients With Neuromuscular Disorders |
| NCT05200702 | Not specified | COMPLETED | Assessment of Safety and Acute Effects of a Knee-hip Powered Soft Exoskeleton in Patients With Neuromuscular Disorders |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT06396546 | Not specified | RECRUITING | ‘Glycogen Storage Diseases (GSDs) in Indian Children- Establishing an Indian GSD (I-GSD) Registry’ |
| NCT06795152 | Not specified | RECRUITING | Rare Glycogen Storage Diseases Natural History Study |
| NCT06813443 | Not specified | RECRUITING | Characterization of Patients With Cardiomyopathy to Identify Critical Patients Candidates for Cardiac Transplantation |
| NCT07136844 | Not specified | RECRUITING | Gait Analysis Parameter and Upper Limb Evaluation in Adult Patients With Neurological or Metabolic Pathology |
| NCT07336394 | Not specified | RECRUITING | Precision Diagnosis and Risk Stratification of Rare Cardiomyopathies Based on Novel Cardiac Magnetic Resonance Techniques |
| NCT07614139 | Not specified | COMPLETED | Continuous Glucose Monitoring Alerts, Accuracy, and Patient Outcomes in Adults With Inherited Metabolic Disorders |
Related Atlas pages
- Associated diseases: glycogen storage disease VI
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute lymphoblastic leukemia, disorder of glycogen metabolism, glycogen storage disease VI, psychotic disorder, rectal cancer