PYGL

gene
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Also known as GSD6

Summary

PYGL (glycogen phosphorylase L, HGNC:9725) is a protein-coding gene on chromosome 14q22.1, encoding Glycogen phosphorylase, liver form (P06737). Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.

This gene encodes a homodimeric protein that catalyses the cleavage of alpha-1,4-glucosidic bonds to release glucose-1-phosphate from liver glycogen stores. This protein switches from inactive phosphorylase B to active phosphorylase A by phosphorylation of serine residue 15. Activity of this enzyme is further regulated by multiple allosteric effectors and hormonal controls. Humans have three glycogen phosphorylase genes that encode distinct isozymes that are primarily expressed in liver, brain and muscle, respectively. The liver isozyme serves the glycemic demands of the body in general while the brain and muscle isozymes supply just those tissues. In glycogen storage disease type VI, also known as Hers disease, mutations in liver glycogen phosphorylase inhibit the conversion of glycogen to glucose and results in moderate hypoglycemia, mild ketosis, growth retardation and hepatomegaly. Alternative splicing results in multiple transcript variants encoding different isoforms.

Source: NCBI Gene 5836 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): glycogen storage disease VI (Definitive, ClinGen)
  • GWAS associations: 4
  • Clinical variants (ClinVar): 452 total — 43 pathogenic, 27 likely-pathogenic
  • Phenotypes (HPO): 34
  • Druggable target: yes — 3 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_002863

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9725
Approved symbolPYGL
Nameglycogen phosphorylase L
Location14q22.1
Locus typegene with protein product
StatusApproved
AliasesGSD6
Ensembl geneENSG00000100504
Ensembl biotypeprotein_coding
OMIM613741
Entrez5836

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 19 protein_coding, 4 retained_intron

ENST00000216392, ENST00000528757, ENST00000530336, ENST00000532107, ENST00000532462, ENST00000544180, ENST00000553872, ENST00000874286, ENST00000874287, ENST00000874288, ENST00000874289, ENST00000874290, ENST00000874291, ENST00000924121, ENST00000924122, ENST00000924123, ENST00000924124, ENST00000924125, ENST00000941158, ENST00000941159, ENST00000941160, ENST00000941161, ENST00000941162

RefSeq mRNA: 2 — MANE Select: NM_002863 NM_001163940, NM_002863

CCDS: CCDS32080, CCDS53894

Canonical transcript exons

ENST00000216392 — 20 exons

ExonStartEnd
ENSE000006571915092095650921067
ENSE000006571925092396950924100
ENSE000015070825091696250917105
ENSE000021750225094416150944483
ENSE000022013245090521750905556
ENSE000034996015091470150914815
ENSE000035035375091582550915971
ENSE000035133305090882150908955
ENSE000035453135091173050911871
ENSE000035546175093510750935185
ENSE000035793525093167350931776
ENSE000035841785091197850912036
ENSE000035869115090989550910102
ENSE000035944535092054150920623
ENSE000036125495091533650915499
ENSE000036147455091302950913130
ENSE000036258525090827150908337
ENSE000036424825091664250916734
ENSE000036476025091215650912303
ENSE000036895185093773650937837

Expression profiles

Bgee: expression breadth ubiquitous, 255 present calls, max score 97.79.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 58.4449 / max 4611.1911, expressed in 1758 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
14318335.48381735
14318218.06251714
1431813.89821372
1431801.0003556

Top tissues by expression

281 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
bloodUBERON:000017897.79gold quality
monocyteCL:000057697.59gold quality
mononuclear cellCL:000084297.17gold quality
leukocyteCL:000073897.07gold quality
right lobe of liverUBERON:000111496.71gold quality
bone marrowUBERON:000237196.28gold quality
adipose tissueUBERON:000101396.18gold quality
adipose tissue of abdominal regionUBERON:000780895.99gold quality
bone marrow cellCL:000209295.90gold quality
omental fat padUBERON:001041495.85gold quality
connective tissueUBERON:000238495.83gold quality
peritoneumUBERON:000235895.80gold quality
gingival epitheliumUBERON:000194995.78gold quality
bone elementUBERON:000147495.60gold quality
palpebral conjunctivaUBERON:000181295.25gold quality
subcutaneous adipose tissueUBERON:000219095.20gold quality
gingivaUBERON:000182895.16gold quality
liverUBERON:000210795.15gold quality
esophagus mucosaUBERON:000246995.11gold quality
trabecular bone tissueUBERON:000248395.00gold quality
amniotic fluidUBERON:000017394.06gold quality
granulocyteCL:000009494.01gold quality
ectocervixUBERON:001224993.95gold quality
esophagus squamous epitheliumUBERON:000692093.91gold quality
right lungUBERON:000216793.79gold quality
spleenUBERON:000210693.61gold quality
vaginaUBERON:000099693.05gold quality
squamous epitheliumUBERON:000691492.66gold quality
lower esophagus mucosaUBERON:003583492.48gold quality
epithelium of esophagusUBERON:000197692.47gold quality

Single-cell (SCXA)

Detected in 6 experiment(s), a significant marker in 6.

ExperimentMarker?Max mean expression
E-MTAB-11121yes230.90
E-MTAB-6701yes46.25
E-GEOD-135922yes19.87
E-MTAB-9067yes10.14
E-MTAB-9801yes9.81
E-ANND-3no0.00

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

21 targeting PYGL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-518D-5P100.0067.51979
HSA-MIR-518E-5P100.0067.66954
HSA-MIR-518F-5P100.0067.51979
HSA-MIR-519A-5P100.0067.66954
HSA-MIR-519B-5P100.0067.66954
HSA-MIR-519C-5P100.0067.66954
HSA-MIR-520C-5P100.0067.51979
HSA-MIR-522-5P100.0067.66954
HSA-MIR-523-5P100.0067.66954
HSA-MIR-526A-5P100.0067.51979
HSA-MIR-548AA99.9670.643753
HSA-MIR-548AP-3P99.9670.643753
HSA-MIR-548T-3P99.9670.643753
HSA-MIR-430799.8270.453374
HSA-MIR-888-5P99.3070.151855
HSA-MIR-125798.9768.021133
HSA-MIR-6796-3P98.6865.49689
HSA-MIR-3613-5P98.4068.91604
HSA-MIR-5000-5P97.4066.111055
HSA-MIR-514A-3P96.4367.771048
HSA-MIR-514B-3P96.4367.771048

Literature-anchored findings (GeneRIF, showing 12)

  • A novel role for Strip/Cka in JNK pathway regulation during spermatogenesis within the developing Drosophila testis. (PMID:31164352)
  • Mob4/Cka/Mts functions as an intrinsic molecular switch coordinating Hippo and InR/PI3K/Akt pathways and enabling neural stem cells reactivation. (PMID:31167138)
  • Susceptibility to excessive liver glycogen storage in patients with type 1 diabetes. (PMID:15223230)
  • Deficiency of liver glycogen phosphorylase is predominantly the result of missense mutations affecting enzyme activity. There are no common mutations and the severity of clinical symptoms varies significantly. (PMID:17705025)
  • The vitamin B6-regulated enzymes PYGL and G6PD fuel NADPH oxidases to promote skin inflammation. (PMID:32126244)
  • Description of two GSD VI patients expanding the spectrum of PYGL mutations. (PMID:32268899)
  • Glycogen storage disease type VI can progress to cirrhosis: ten Chinese patients with GSD VI and a literature review. (PMID:32892177)
  • Glycogen storage disease type VI with a novel PYGL mutation: Two case reports and literature review. (PMID:33879691)
  • Long noncoding RNA KCNMB2-AS1 promotes the development of esophageal cancer by modulating the miR-3194-3p/PYGL axis. (PMID:34516362)
  • Human hair follicles operate an internal Cori cycle and modulate their growth via glycogen phosphorylase. (PMID:34675331)
  • Identification of PYGL as a key prognostic gene of glioma by integrated bioinformatics analysis. (PMID:35037470)
  • miR-155-5p regulates hypoxia-induced pulmonary artery smooth muscle cell function by targeting PYGL. (PMID:35611851)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriopyglENSDARG00000002197
mus_musculusPyglENSMUSG00000021069
rattus_norvegicusPyglENSRNOG00000006388
drosophila_melanogasterGlypFBGN0004507
caenorhabditis_elegansWBGENE00020696

Paralogs (2): PYGM (ENSG00000068976), PYGB (ENSG00000100994)

Protein

Protein identifiers

Glycogen phosphorylase, liver formP06737 (reviewed: P06737)

All UniProt accessions (2): P06737, E9PK47

UniProt curated annotations — full annotation on UniProt →

Function. Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.

Subunit / interactions. Homodimer; enzymatically active. Interacts with PPP1R3B; recruits the phosphatase PP1 which dephosphorylates and inactivates PYGL/glycogen phosphorylase.

Subcellular location. Cytoplasm. Cytosol.

Post-translational modifications. Acetylation, which is up-regulated by glucose and insulin and down-regulated by glucagon, inhibits the glycogen phosphorylase activity by promoting PPP1R3B-mediated recruitment of phosphatase PP1 and Ser-15 dephosphorylation. Phosphorylation at Ser-15 converts inactive phosphorylase b into active phosphorylase a. Dephosphorylation of Ser-15 by phosphatase PP1 inactivates the enzyme.

Disease relevance. Glycogen storage disease 6 (GSD6) [MIM:232700] A metabolic disorder characterized by mild to moderate hypoglycemia, mild ketosis, growth retardation, and prominent hepatomegaly. Heart and skeletal muscle are not affected. The disease is caused by variants affecting the gene represented in this entry.

Activity regulation. Allosterically regulated through the non-covalent binding of metabolites, being activated by AMP and inhibited by ATP, ADP, and glucose-6-phosphate. The activity is also controlled by post-translational modifications including phosphorylation and acetylation.

Similarity. Belongs to the glycogen phosphorylase family.

Isoforms (2)

UniProt IDNamesCanonical?
P06737-11yes
P06737-22

RefSeq proteins (2): NP_001157412, NP_002854* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000811Glyco_trans_35Family
IPR011833Glycg_phsphrylasFamily
IPR035090Pyridoxal_P_attach_siteConserved_site

Pfam: PF00343

Enzyme classification (BRENDA):

  • EC 2.4.1.1 — glycogen phosphorylase (BRENDA: 72 organisms, 328 substrates, 721 inhibitors, 318 Km, 78 kcat entries)

Substrate kinetics (BRENDA)

31 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
PHOSPHATE0.45–10053
GLUCOSE 1-PHOSPHATE0.05–2039
GLYCOGEN0.0138–4023
MALTOHEPTAOSE0.08–39.8622
MALTOTETRAOSE0.28–5322
MALTOPENTAOSE0.11–28019
STARCH0.013–15.516
ALPHA-D-GLUCOSE 1-PHOSPHATE0.054–2214
MALTOHEXAOSE0.16–3212
MALTOTRIOSE0.3–7011
AMP9
D-GLUCOSE-1-PHOSPHATE0.33–0.968
AMYLOSE0.71–206
AMYLOPECTIN0.0046–0.035
SOLUBLE STARCH0.0106–0.154

Catalyzed reactions (Rhea), 1 shown:

UniProt features (128 total): helix 48, strand 32, modified residue 9, turn 9, sequence variant 9, sequence conflict 8, mutagenesis site 4, binding site 3, site 3, initiator methionine 1, chain 1, splice variant 1

Structure

Experimental structures (PDB)

19 structures.

PDBMethodResolution (Å)
3DDSX-RAY DIFFRACTION1.8
2ATIX-RAY DIFFRACTION1.9
3DDWX-RAY DIFFRACTION1.9
1L5RX-RAY DIFFRACTION2.1
1L5SX-RAY DIFFRACTION2.1
1XOIX-RAY DIFFRACTION2.1
1EM6X-RAY DIFFRACTION2.2
1L5QX-RAY DIFFRACTION2.25
1L7XX-RAY DIFFRACTION2.3
1EXVX-RAY DIFFRACTION2.4
1FA9X-RAY DIFFRACTION2.4
1FC0X-RAY DIFFRACTION2.4
2ZB2X-RAY DIFFRACTION2.45
3CEMX-RAY DIFFRACTION2.47
2QLLX-RAY DIFFRACTION2.56
3DD1X-RAY DIFFRACTION2.57
8EMSELECTRON MICROSCOPY2.65
3CEHX-RAY DIFFRACTION2.8
3CEJX-RAY DIFFRACTION3.3

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P06737-F192.870.87

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (3): 109 (involved in the association of subunits); 143 (involved in the association of subunits); 156 (may be involved in allosteric control)

Ligand- & substrate-binding residues (3): 43–45; 76; 310

Post-translational modifications (9): 364, 470, 524, 561, 639, 681, 796, 2, 15

Mutagenesis-validated functional residues (4):

PositionPhenotype
470decreased glycogen phosphorylase activity.
470decreased acetylation; when associated with r-796.
796decreased glycogen phosphorylase activity.
796decreased acetylation; when associated with r-470.

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-6798695Neutrophil degranulation
R-HSA-70221Glycogen breakdown (glycogenolysis)

MSigDB gene sets: 307 (showing top): REACTOME_INNATE_IMMUNE_SYSTEM, MOOTHA_GLYCOGEN_METABOLISM, GOCC_SECRETORY_GRANULE, MODULE_151, MODULE_45, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, MODULE_16, DOANE_BREAST_CANCER_CLASSES_DN, SHEPARD_BMYB_MORPHOLINO_DN, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_POLYSACCHARIDE_CATABOLIC_PROCESS, HSIAO_LIVER_SPECIFIC_GENES, GOBP_CARBOHYDRATE_METABOLIC_PROCESS, KEGG_STARCH_AND_SUCROSE_METABOLISM, BROWN_MYELOID_CELL_DEVELOPMENT_UP

GO Biological Process (6): glycogen metabolic process (GO:0005977), glycogen catabolic process (GO:0005980), response to bacterium (GO:0009617), glucose homeostasis (GO:0042593), necroptotic process (GO:0070266), carbohydrate metabolic process (GO:0005975)

GO Molecular Function (15): purine nucleobase binding (GO:0002060), ATP binding (GO:0005524), D-glucose binding (GO:0005536), glycogen phosphorylase activity (GO:0008184), AMP binding (GO:0016208), vitamin binding (GO:0019842), pyridoxal phosphate binding (GO:0030170), bile acid binding (GO:0032052), identical protein binding (GO:0042802), nucleotide binding (GO:0000166), catalytic activity (GO:0003824), 1,4-alpha-oligoglucan phosphorylase activity (GO:0004645), protein binding (GO:0005515), transferase activity (GO:0016740), glycosyltransferase activity (GO:0016757)

GO Cellular Component (6): extracellular region (GO:0005576), cytoplasm (GO:0005737), cytosol (GO:0005829), secretory granule lumen (GO:0034774), extracellular exosome (GO:0070062), ficolin-1-rich granule lumen (GO:1904813)

Reactome top-level categories

Rollup of top-2 pathways:

CategoryPathways
Innate Immune System1
Glycogen metabolism1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure3
adenyl ribonucleotide binding2
anion binding2
energy reserve metabolic process1
glucan metabolic process1
glycogen metabolic process1
glucan catabolic process1
response to other organism1
carbohydrate homeostasis1
programmed necrotic cell death1
primary metabolic process1
nucleobase binding1
purine ribonucleoside triphosphate binding1
monosaccharide binding1
1,4-alpha-oligoglucan phosphorylase activity1
cation binding1
small molecule binding1
vitamin B6 binding1
monocarboxylic acid binding1
protein binding1
nucleoside phosphate binding1
heterocyclic compound binding1
molecular_function1
hexosyltransferase activity1
binding1
catalytic activity1
transferase activity1
intracellular anatomical structure1
cytoplasm1
secretory granule1
cytoplasmic vesicle lumen1
extracellular vesicle1
intracellular organelle lumen1
ficolin-1-rich granule1

Protein interactions and networks

STRING

2499 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
PYGLGYS2P54840960
PYGLAGLP35573801
PYGLUGP2Q16851800
PYGLG6PC1P35575791
PYGLG6PC3Q9BUM1789
PYGLGCKP35557782
PYGLG6PC2Q9NQR9782
PYGLGYS1P13807778
PYGLGBE1Q04446763
PYGLINSP01308760
PYGLH6PDO95479717
PYGLPPP1R3BQ86XI6682
PYGLLIPEQ05469675
PYGLGYG1P46976666
PYGLG6PDP11413664

IntAct

81 interactions, top by confidence:

ABTypeScore
IKBKBCHUKpsi-mi:“MI:0914”(association)0.960
PYGBPYGLpsi-mi:“MI:0915”(physical association)0.850
PYGLPYGBpsi-mi:“MI:0915”(physical association)0.850
STBD1GABARAPpsi-mi:“MI:0914”(association)0.760
CFTRESYT2psi-mi:“MI:2364”(proximity)0.710
CFTRESYT2psi-mi:“MI:0914”(association)0.710
PPP1CACCDC85Cpsi-mi:“MI:0914”(association)0.670
CFTRHAX1psi-mi:“MI:0914”(association)0.610
PYGLPYGMpsi-mi:“MI:0915”(physical association)0.560
DCAF4L2CLUHpsi-mi:“MI:0914”(association)0.530
HSPB8VWA8psi-mi:“MI:0914”(association)0.530
ZFP41LRP4psi-mi:“MI:0914”(association)0.530
PYGBSTBD1psi-mi:“MI:0914”(association)0.530
PYGLLRRFIP2psi-mi:“MI:0915”(physical association)0.400
PYGLBAG1psi-mi:“MI:0915”(physical association)0.370
PYGLIDH2psi-mi:“MI:0915”(physical association)0.370
PYGLHSD3B7psi-mi:“MI:0915”(physical association)0.370
STAT1KPNA6psi-mi:“MI:0914”(association)0.350
APBB1SSPOPpsi-mi:“MI:0914”(association)0.350
Prdm16ESYT2psi-mi:“MI:0914”(association)0.350
MecomESYT2psi-mi:“MI:0914”(association)0.350

BioGRID (153): PYGL (Affinity Capture-MS), PYGL (Two-hybrid), PYGL (Affinity Capture-MS), PYGL (Affinity Capture-MS), PYGL (Affinity Capture-MS), GBE1 (Co-fractionation), PFKL (Co-fractionation), PFKP (Co-fractionation), PGK1 (Co-fractionation), PYGL (Co-fractionation), PYGL (Co-fractionation), PYGL (Co-fractionation), PYGL (Proximity Label-MS), PYGL (Proximity Label-MS), PYGL (Proximity Label-MS)

ESM2 similar proteins: A0A061AE05, A0QQV6, A1D858, A4YKV0, A5ETE1, A5VSQ0, A9CKA8, A9ILN1, A9M8Q9, B0CIS7, B2S877, B3QBB7, B6IUW0, B6JAC3, C0RFG8, O05877, P06737, P09811, P09824, P11216, P53534, P56862, Q07VC7, Q0V6P9, Q13EF2, Q1QQX2, Q21BY5, Q2J2R9, Q2YLS2, Q3B7M9, Q57AX5, Q5LSN8, Q5LU04, Q5LX16, Q5MIB6, Q5R5M6, Q6NCG2, Q83XD3, Q886D9, Q89XV1

Diamond homologs: O18751, O84250, P00489, P00490, P04045, P06737, P06738, P09811, P09812, P0AC86, P0AC87, P11216, P11217, P27598, P29849, P32811, P34114, P39123, P45180, P53534, P53535, P53536, P53537, P73511, P79334, Q00766, Q0VCM4, Q3B7M9, Q5MIB5, Q5MIB6, Q5R5M6, Q8CI94, Q8HXW4, Q9CN90, Q9ET01, Q9LIB2, Q9LKJ3, Q9PKE6, Q9SD76, Q9WUB3

SIGNOR signaling

9 interactions.

AEffectBMechanism
RIPK3up-regulatesPYGLbinding
CP-91149down-regulatesPYGL“chemical inhibition”
PYGL“down-regulates quantity”glycogen“chemical modification”
PYGL“up-regulates quantity”“alpha-D-glucose 1-phosphate(2-)”“chemical modification”
PHKG1“up-regulates activity”PYGLphosphorylation
PHKG2“up-regulates activity”PYGLphosphorylation
PP1“down-regulates activity”PYGLdephosphorylation
OGT“up-regulates activity”PYGLglycosylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 86 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Activation of NF-kappaB in B cells516.4×1e-03
FCERI mediated NF-kB activation615.6×8e-04
CLEC7A (Dectin-1) signaling614.3×8e-04
Downstream TCR signaling612.8×9e-04
Interleukin-1 signaling612.4×9e-04
PKR-mediated signaling511.8×2e-03
ER-Phagosome pathway510.8×3e-03
SARS-CoV-2 activates/modulates innate and adaptive immune responses68.9×2e-03

GO biological processes:

GO termPartnersFoldFDR
autophagy812.1×2e-04

Disease & clinical

Clinical variants and AI predictions

ClinVar

452 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic43
Likely pathogenic27
Uncertain significance185
Likely benign94
Benign46

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1029651NM_002863.5(PYGL):c.528+2T>CPathogenic
1070486NC_000014.8:g.(?51372090)(51411141_?)delPathogenic
1076414NM_002863.5(PYGL):c.1726C>T (p.Arg576Ter)Pathogenic
11992NM_002863.5(PYGL):c.1768+1G>APathogenic
11993NM_002863.5(PYGL):c.529-1G>CPathogenic
11995NM_002863.5(PYGL):c.1131C>G (p.Asn377Lys)Pathogenic
1298581NM_002863.5(PYGL):c.1099G>T (p.Glu367Ter)Pathogenic
1319173NM_002863.5(PYGL):c.1518+1delPathogenic
1686118NM_002863.5(PYGL):c.1404-1G>APathogenic
1799523NM_002863.5(PYGL):c.198del (p.Arg67fs)Pathogenic
189242NM_002863.5(PYGL):c.25_44dup (p.Ser15fs)Pathogenic
1935779NM_002863.5(PYGL):c.1475G>A (p.Trp492Ter)Pathogenic
194379NM_002863.5(PYGL):c.1648dup (p.Leu550fs)Pathogenic
1987284NM_002863.5(PYGL):c.647G>A (p.Trp216Ter)Pathogenic
1988522NM_002863.5(PYGL):c.514C>T (p.Arg172Ter)Pathogenic
2075738NM_002863.5(PYGL):c.179_197del (p.Val60fs)Pathogenic
21327NM_002863.5(PYGL):c.1195C>T (p.Arg399Ter)Pathogenic
21337NM_002863.5(PYGL):c.280C>T (p.Arg94Ter)Pathogenic
21339NM_002863.5(PYGL):c.698G>A (p.Gly233Asp)Pathogenic
2148422NM_002863.5(PYGL):c.1964_1969+4delinsGAAAAAPathogenic
2627510NM_002863.5(PYGL):c.528+1G>APathogenic
2815716NM_002863.5(PYGL):c.1228A>T (p.Lys410Ter)Pathogenic
3252330NM_002863.5(PYGL):c.773-2A>GPathogenic
3346255NM_002863.5(PYGL):c.856dup (p.Glu288Ter)Pathogenic
3385228NM_002863.5(PYGL):c.730C>T (p.Leu244Phe)Pathogenic
3701206NM_002863.5(PYGL):c.1778_1781del (p.Lys593fs)Pathogenic
3720984NM_002863.5(PYGL):c.808C>T (p.Arg270Ter)Pathogenic
3727125NM_002863.5(PYGL):c.324del (p.Cys109fs)Pathogenic
3772160NM_002863.5(PYGL):c.702C>G (p.Tyr234Ter)Pathogenic
38367NM_002863.5(PYGL):c.1016A>G (p.Asn339Ser)Pathogenic

SpliceAI

4910 predictions. Top by Δscore:

VariantEffectΔscore
14:50872274:CTGCG:Cdonor_gain1.0000
14:50872275:TGCG:Tdonor_gain1.0000
14:50872276:GCG:Gdonor_gain1.0000
14:50872276:GCGG:Gdonor_gain1.0000
14:50872277:CG:Cdonor_gain1.0000
14:50872277:CGGT:Cdonor_loss1.0000
14:50872278:GG:Gdonor_gain1.0000
14:50872278:GGT:Gdonor_loss1.0000
14:50872279:G:GGdonor_gain1.0000
14:50872279:GTGA:Gdonor_loss1.0000
14:50872280:T:Gdonor_loss1.0000
14:50872281:GAGTA:Gdonor_loss1.0000
14:50881581:A:AGacceptor_gain1.0000
14:50881582:A:Gacceptor_gain1.0000
14:50888816:A:AGacceptor_gain1.0000
14:50888817:T:Gacceptor_gain1.0000
14:50888821:A:AGacceptor_gain1.0000
14:50888821:AAG:Aacceptor_gain1.0000
14:50888822:A:Gacceptor_gain1.0000
14:50888875:TTGC:Tdonor_gain1.0000
14:50888899:TAAAG:Tdonor_loss1.0000
14:50888900:AAAG:Adonor_loss1.0000
14:50888901:AAGG:Adonor_loss1.0000
14:50888902:AGGTG:Adonor_loss1.0000
14:50888903:GG:Gdonor_loss1.0000
14:50888905:T:Adonor_loss1.0000
14:50901826:TAG:Tacceptor_loss1.0000
14:50901827:A:AGacceptor_gain1.0000
14:50901827:AGA:Aacceptor_loss1.0000
14:50901828:G:GGacceptor_gain1.0000

AlphaMissense

5630 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
14:50912199:C:AK575N1.000
14:50912199:C:GK575N1.000
14:50912200:T:AK575M1.000
14:50914745:A:GW492R1.000
14:50914745:A:TW492R1.000
14:50915902:A:GW388R1.000
14:50915902:A:TW388R1.000
14:50931700:G:CF167L1.000
14:50931700:G:TF167L1.000
14:50931702:A:GF167L1.000
14:50905460:A:GW826R0.999
14:50905460:A:TW826R0.999
14:50905489:C:GR816P0.999
14:50905494:A:CS814R0.999
14:50905494:A:TS814R0.999
14:50905496:T:GS814R0.999
14:50905500:G:CF812L0.999
14:50905500:G:TF812L0.999
14:50905502:A:GF812L0.999
14:50910015:C:TG686E0.999
14:50910016:C:AG686W0.999
14:50910029:C:AK681N0.999
14:50910029:C:GK681N0.999
14:50910031:T:CK681E0.999
14:50910035:A:CN679K0.999
14:50910035:A:TN679K0.999
14:50910046:C:AG676W0.999
14:50911867:G:TA611D0.999
14:50911870:G:TA610D0.999
14:50912197:C:GR576P0.999

dbSNP variants (sampled 300 via entrez): RS1000072939 (14:50943652 C>G,T), RS1000119603 (14:50930773 A>C), RS1000146278 (14:50943468 G>A), RS1000152292 (14:50934671 ATG>A,ATGTG), RS1000160174 (14:50925125 G>A), RS1000173865 (14:50930410 G>T), RS1000257515 (14:50934483 T>A), RS1000346242 (14:50925160 C>T), RS1000347948 (14:50928420 C>A), RS1000399635 (14:50921537 G>A), RS1000504546 (14:50919114 C>T), RS1000576563 (14:50921704 A>C), RS1000628784 (14:50922002 T>C), RS1000711044 (14:50937383 A>T), RS1000740925 (14:50912810 C>A,T)

Disease associations

OMIM: gene MIM:613741 | disease phenotypes: MIM:232700, MIM:232200

GenCC curated gene-disease

DiseaseClassificationInheritance
glycogen storage disease VIDefinitiveAutosomal recessive

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
glycogen storage disease VIDefinitiveAR

Mondo (2): glycogen storage disease VI (MONDO:0009294), disorder of glycogen metabolism (MONDO:0002412)

Orphanet (2): Glycogen storage disease due to liver glycogen phosphorylase deficiency (Orphanet:369), Glycogen storage disease (Orphanet:79201)

HPO phenotypes

34 total (30 of 34 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000077Abnormality of the kidney
HP:0000093Proteinuria
HP:0000737Irritability
HP:0000823Delayed puberty
HP:0000938Osteopenia
HP:0000939Osteoporosis
HP:0001252Hypotonia
HP:0001270Motor delay
HP:0001394Cirrhosis
HP:0001395Hepatic fibrosis
HP:0001402Hepatocellular carcinoma
HP:0001508Failure to thrive
HP:0001510Growth delay
HP:0001531Failure to thrive in infancy
HP:0001639Hypertrophic cardiomyopathy
HP:0001943Hypoglycemia
HP:0001946Ketosis
HP:0002155Hypertriglyceridemia
HP:0002240Hepatomegaly
HP:0002360Sleep disturbance
HP:0002910Elevated circulating hepatic transaminase concentration
HP:0003077Hyperlipidemia
HP:0003124Hypercholesterolemia
HP:0003270Abdominal distention
HP:0003710Exercise-induced muscle cramps
HP:0004322Short stature
HP:0004913Intermittent lactic acidemia
HP:0006568Increased hepatic glycogen content
HP:0006580Portal fibrosis

GWAS associations

4 associations (top):

StudyTraitp-value
GCST001693_4Acute lymphoblastic leukemia (childhood)7.000000e-09
GCST002211_4Psychosis (atypical)8.000000e-07
GCST006585_2675Blood protein levels3.000000e-06
GCST012204_1Rectal cancer5.000000e-09

MeSH disease descriptors (2)

DescriptorNameTree numbers
D006008Glycogen Storage DiseaseC16.320.565.202.449; C18.452.648.202.449
D006013Glycogen Storage Disease Type VIC16.320.565.202.449.580; C18.452.648.202.449.580

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL2568 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

3 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 102,674 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL428690ALVOCIDIB327,781
CHEMBL50QUERCETIN374,559
CHEMBL206468AFEGOSTAT2334

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs7142143Efficacy3asparaginase;dexamethasone;methotrexateAcute lymphoblastic leukemia

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs7142143PYGL30.001asparaginase;dexamethasone;methotrexate

Binding affinities (BindingDB)

99 measured of 104 human assays (104 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
2,3-dichloro-N-{1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-4H-thieno[3,2-b]pyrrole-5-carboxamideIC502 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(4-methoxyphenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC503 nM
(2S,3R)-3-(tert-butoxy)-2-{[2-({[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoyl}amino)-4-(3-fluorophenyl)phenyl]formamido}butanoic acidIC503 nM
(2S,3R)-3-(tert-butoxy)-2-{[2-({[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoyl}amino)-4-fluorophenyl]formamido}butanoic acidIC504 nM
(2S,3R)-3-(tert-butoxy)-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-(4-methoxyphenyl)phenyl)formamido]butanoic acidIC504 nM
(2S,3R)-3-(tert-butoxy)-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-(3-fluorophenyl)phenyl)formamido]butanoic acidIC504 nM
CP-526,423IC506 nM
2,3-dichloro-N-[1-(2-hydroxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamideIC507 nM
(2S,3R)-3-(tert-butoxy)-2-[(3-{[(2,4,6-trimethylphenyl)carbamoyl]amino}naphthalen-2-yl)formamido]butanoic acidIC507 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(4-fluorophenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC507 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(3,4-difluorophenyl)-2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC507 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(3-methoxyphenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC508 nM
(2S,3R)-3-(tert-butoxy)-2-[(4-phenyl-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl)formamido]butanoic acidIC5010 nM
(2S,3R)-3-(tert-butoxy)-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-fluorophenyl)formamido]butanoic acidIC5010 nM
2-chloro-N-[(3S)-1-[(2S)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5012 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(3,4-difluorophenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC5013 nM
(2S)-2-cyclohexyl-2-{[2-({[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoyl}amino)-4-fluorophenyl]formamido}acetic acidIC5013 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(3-fluorophenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC5015 nM
5-chloro-N-[1-(2-hydroxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-1H-indole-2-carboxamideIC5017 nM
(2S)-2-cyclohexyl-2-[(2-{[(2,6-dimethyl-4-propylphenyl)carbamoyl]amino}-4-fluorophenyl)formamido]acetic acidIC5019 nM
indole-2-carboxamide derivative, 25e (R-isomer)IC5020 nM
2-chloro-N-[1-(3-hydroxypropyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5021 nM
2-chloro-N-[(3R)-1-[(2S)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5021 nM
2-chloro-N-[1-(2-hydroxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5026 nM
2-chloro-N-[(3S)-1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5027 nM
2-chloro-N-[1-(cyanomethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5028 nM
(2S,3R)-3-(tert-butoxy)-2-{[4-(2-methoxyphenyl)-2-{[(2,4,6-trimethylphenyl)carbamoyl]amino}phenyl]formamido}butanoic acidIC5028 nM
2-chloro-N-{1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5029 nM
indole-2-carboxamide derivative, 25eIC5036 nM
2,3-dichloro-N-{1-[3-hydroxy-2-(hydroxymethyl)propyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-4H-thieno[3,2-b]pyrrole-5-carboxamideIC5038 nM
2-chloro-N-[(3R)-1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5040 nM
2-chloro-N-(2-oxo-1,2,3,4-tetrahydroquinolin-3-yl)-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5041 nM
2-chloro-N-[1-(2-hydroxybutyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5044 nM
5-chloro-N-{1-[(2R)-2,3-dihydroxypropyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-1H-indole-2-carboxamideIC5044 nM
1-{(S)-2-[(5-Chloro-1H-indole-2-carbonyl)-amino]-3-phenyl-propionyl}-azetidine-3-carboxylic acidIC5045 nM
2-chloro-N-[1-(2-methanesulfinylethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5048 nM
indole-2-carboxamide derivative, 25dIC5048 nM
(2S)-2-[(2-{[(4-butyl-2,6-dimethylphenyl)carbamoyl]amino}-4-fluorophenyl)formamido]-2-cyclohexylacetic acidIC5049 nM
2-chloro-N-[1-(2-methoxyethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5050 nM
2-chloro-N-{1-[3-hydroxy-2-(hydroxymethyl)propyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5060 nM
2-chloro-N-[1-(2-methanesulfonylethyl)-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5063 nM
2-[3-({2,3-dichloro-4H-thieno[3,2-b]pyrrole-5-}amido)-2-oxo-1,2,3,4-tetrahydroquinolin-1-yl]acetic acidIC5063 nM
indole-2-carboxamide derivative, 25cIC5063 nM
5-chloro-N-{1-[3-hydroxy-2-(hydroxymethyl)propyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-1H-indole-2-carboxamideIC5066 nM
indole-2-carboxamide derivative, 15IC5068 nM
(2S)-2-[(3-{[(2-chloro-6-methylphenyl)carbamoyl]amino}naphthalen-2-yl)formamido]-2-cyclohexylacetic acidIC5073 nM
2-chloro-N-{1-[(N’-hydroxycarbamimidoyl)methyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5075 nM
2-chloro-N-{1-[(methylcarbamoyl)methyl]-2-oxo-1,2,3,4-tetrahydroquinolin-3-yl}-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5079 nM
2-chloro-N-[2-oxo-1-(2-oxobutyl)-1,2,3,4-tetrahydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamideIC5084 nM
methyl 2-[3-({2-chloro-6H-thieno[2,3-b]pyrrole-5-}amido)-2-oxo-1,2,3,4-tetrahydroquinolin-1-yl]acetateIC5084 nM

ChEMBL bioactivities

666 potent at pChembl≥5 of 715 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.00IC501nMCHEMBL134802
9.00IC501nMCHEMBL133911
8.70IC502nMCHEMBL394526
8.70IC502nMCHEMBL440528
8.70IC502nMCHEMBL133832
8.70IC502nMCHEMBL115651
8.62Kd2.394nMCHEMBL3752910
8.62ED502.394nMCHEMBL3752910
8.52IC503nMCHEMBL471266
8.52IC503nMCHEMBL458655
8.52IC503nMCHEMBL132191
8.40IC504nMCHEMBL459792
8.40IC504nMCHEMBL506011
8.40IC504nMCHEMBL449986
8.40IC504nMCHEMBL133274
8.40IC504nMCHEMBL115341
8.30IC505nMCHEMBL217994
8.30IC505nMCHEMBL480195
8.30IC505nMCHEMBL481534
8.30IC505nMCHEMBL423509
8.22IC506nMCHEMBL434025
8.22IC506nMCHEMBL472140
8.22IC506nMCHEMBL474193
8.15IC507nMCHEMBL395733
8.15IC507nMCHEMBL473851
8.15IC507nMCHEMBL472292
8.15IC507nMCHEMBL443938
8.10IC508nMCHEMBL479920
8.10IC507.88nMCHEMBL113736
8.10IC508nMCHEMBL113762
8.05IC509nMCHEMBL219059
8.05IC509nMCHEMBL516081
8.04IC509.1nMCHEMBL114226
8.00IC5010nMCHEMBL482146
8.00IC5010nMCHEMBL471469
8.00IC5010nMCHEMBL473486
8.00IC5010nMCHEMBL133923
8.00IC5010nMCHEMBL132640
7.96IC5011nMCHEMBL133603
7.96IC5011nMCHEMBL114731
7.96IC5010.9nMCHEMBL326950
7.92IC5012nMCHEMBL179485
7.92IC5012nMCHEMBL396724
7.92IC5012nMCHEMBL488273
7.92IC5012nMCHEMBL337224
7.91IC5012.4nMCHEMBL114846
7.89IC5013nMCHEMBL519796
7.89IC5013nMCHEMBL512725
7.89IC5013nMCHEMBL474098
7.89IC5013nMCHEMBL133114

PubChem BioAssay actives

762 with measured affinity, of 1146 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
4-[3-fluoro-2-[(4-nitropyridine-2-carbonyl)amino]phenoxy]phthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0010uM
4-[3-[(4-nitropyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0010uM
2,3-dichloro-N-[1-[(2R)-2,3-dihydroxypropyl]-2-oxo-3,4-dihydroquinolin-3-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide1798432: Enzyme Inhibition Assay from Article 10.1016/j.bmcl.2006.10.037: “Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.”ic500.0020uM
4-(2-chlorophenyl)-1-[(4-chlorophenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0020uM
4-[3-[(4-chloropyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0020uM
4-[3-[(4-methoxypyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0020uM
4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149160: Binding affinity to human PYGL incubated for 45 mins by Kinobead based pull down assaykd0.0024uM
(2S,3R)-2-[[2-[[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoylamino]-4-(3-fluorophenyl)benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0030uM
(2S,3R)-2-[[4-(4-methoxyphenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0030uM
4-[2-[(4-nitropyridine-2-carbonyl)amino]phenoxy]phthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0030uM
(2S,3R)-2-[[2-[[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoylamino]-4-fluorobenzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0040uM
(2S,3R)-2-[[2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]-4-(4-methoxyphenyl)benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0040uM
(2S,3R)-2-[[2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]-4-(3-fluorophenyl)benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0040uM
4-[3-[(4-ethylpyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0040uM
4-(2-chlorophenyl)-1-[(3,4-dimethoxyphenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0040uM
1-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]cyclooctane-1-carboxylic acid367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucoseic500.0050uM
4-(2-chlorophenyl)-6-methyl-1-[(3-nitrophenyl)methyl]-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0050uM
2,3-dichloro-N-[(2S)-1-(dimethylamino)-1-oxo-3-phenylpropan-2-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide276334: Inhibition of recombinant human liver GPa by multienzyme coupled assayic500.0050uM
(2S)-2-cyclohexyl-2-[[3-[[2,6-dichloro-4-(trifluoromethoxy)phenyl]carbamoylamino]naphthalene-2-carbonyl]amino]acetic acid367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucoseic500.0050uM
5-chloro-N-[2-[2-[2-[(5-chloro-1H-indole-2-carbonyl)amino]ethoxy]ethoxy]ethyl]-1H-indole-2-carboxamide1186739: Inhibition of glycogen phosphorylase a (unknown origin)ic500.0060uM
(2S)-2-cyclohexyl-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]acetic acid367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucoseic500.0060uM
(2S,3R)-3-(1-methylcyclopentyl)oxy-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]butanoic acid367036: Inhibition of human liver glycogen phosphorylase A by fluorescence plate reader assayic500.0060uM
N-[2-[2-[2-[(5-chloro-1H-indole-2-carbonyl)amino]ethoxy]ethoxy]ethyl]-5-methyl-1H-indole-2-carboxamide1799470: Inhibition Activity Assay from Article 10.1016/S1074-5521(00)00004-1: “Human liver glycogen phosphorylase inhibitors bind at a new allosteric site.”ic500.0060uM
2,3-dichloro-N-[1-(2-hydroxyethyl)-2-oxo-3,4-dihydroquinolin-3-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide1798432: Enzyme Inhibition Assay from Article 10.1016/j.bmcl.2006.10.037: “Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.”ic500.0070uM
(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0070uM
(2S,3R)-2-[[4-(4-fluorophenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0070uM
(2S,3R)-2-[[4-(3,4-difluorophenyl)-2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0070uM
4-(2-chlorophenyl)-1-ethyl-6-methyl-5-(2-methylpropylcarbamoyl)-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0079uM
(2S,3R)-2-[[4-(3-methoxyphenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0080uM
4-(2-chlorophenyl)-1-[(3-chlorophenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0080uM
(2S)-5-methyl-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]hexanoic acid367036: Inhibition of human liver glycogen phosphorylase A by fluorescence plate reader assayic500.0090uM
2,3-dichloro-N-[(1R,2R)-1-hydroxy-2,3-dihydro-1H-inden-2-yl]-4H-thieno[3,2-b]pyrrole-5-carboxamide276334: Inhibition of recombinant human liver GPa by multienzyme coupled assayic500.0090uM
4-(2-chlorophenyl)-1-ethyl-6-methyl-5-(propan-2-ylcarbamoyl)-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0091uM
(2S)-2-cyclohexyl-2-[[3-[(2,4,6-trimethylphenyl)carbamoylamino]naphthalene-2-carbonyl]amino]propanoic acid367021: Inhibition of human liver glycogen phosphorylase A by fluorescence intensity endpoint assay in presence of glucoseic500.0100uM
(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-[[4-phenyl-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0100uM
(2S,3R)-2-[[2-[(2,6-dimethyl-4-propylphenyl)carbamoylamino]-4-fluorobenzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0100uM
4-[3-[(4-methylpyridine-2-carbonyl)amino]naphthalen-2-yl]oxyphthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0100uM
4-[2-[(4-chloropyridine-2-carbonyl)amino]-3-fluorophenoxy]phthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0100uM
5-(benzylcarbamoyl)-4-(2-chlorophenyl)-1-ethyl-6-methyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0109uM
1-benzyl-4-(2-chlorophenyl)-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0110uM
4-[3-fluoro-2-[(4-methoxypyridine-2-carbonyl)amino]phenoxy]phthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0110uM
2-chloro-N-[(3S)-1-[(2S)-2,3-dihydroxypropyl]-2-oxo-3,4-dihydroquinolin-3-yl]-6H-thieno[2,3-b]pyrrole-5-carboxamide1798432: Enzyme Inhibition Assay from Article 10.1016/j.bmcl.2006.10.037: “Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.”ic500.0120uM
4-[3-[[4-(trifluoromethyl)pyridine-2-carbonyl]amino]naphthalen-2-yl]oxyphthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0120uM
5-chloro-N-[2-[(1,1-dioxothian-4-yl)-(2-hydroxyethyl)amino]-2-oxoethyl]-1H-indole-2-carboxamide240837: Inhibitory concentration against glycogen phosphorylaseic500.0120uM
(E)-3-(3,4-dichlorophenyl)-N-[2-[2-[[(E)-3-(3,4-dichlorophenyl)prop-2-enoyl]amino]ethylsulfanyl]ethyl]prop-2-enamide409747: Inhibition of human liver glycogen phosphorylase a in presence of glucoseic500.0120uM
4-(2-chlorophenyl)-1-ethyl-5-(ethylcarbamoyl)-6-methyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0124uM
(2S,3R)-2-[[4-(3,4-difluorophenyl)-2-[(2,4,6-trimethylphenyl)carbamoylamino]benzoyl]amino]-3-[(2-methylpropan-2-yl)oxy]butanoic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0130uM
(2S)-2-cyclohexyl-2-[[2-[[4-(cyclopropylmethyl)-2,6-dimethylphenyl]carbamoylamino]-4-fluorobenzoyl]amino]acetic acid1798827: Human Liver GPa Enzymatic Activity Assay from Article 10.1016/j.bmcl.2008.12.085: “Anthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy.”ic500.0130uM
4-(2-chlorophenyl)-1-[(3,4-dichlorophenyl)methyl]-6-methyl-5-propan-2-yloxycarbonyl-4H-pyridine-2,3-dicarboxylic acid101848: In vitro inhibitory activity against human liver glycogen phosphorylase a (HLGPa)ic500.0130uM
4-[4-fluoro-2-[(4-nitropyridine-2-carbonyl)amino]phenoxy]phthalic acid73811: Inhibitory activity against HLGP(human liver glycogen phosphorylase)ic500.0130uM

CTD chemical–gene interactions

68 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, increases expression, affects expression8
Cisplatindecreases expression, increases expression4
trichostatin Aaffects cotreatment, increases expression3
methylmercuric chloridedecreases expression2
bisphenol Adecreases expression, increases expression2
chloropicrinincreases expression, decreases expression2
Vorinostataffects cotreatment, increases expression2
Tobacco Smoke Pollutionaffects expression, increases expression2
Cyclosporinedecreases expression2
bisphenol Fincreases expression1
chloroacetaldehydeaffects expression1
triphenyl phosphateaffects expression1
baicaleindecreases activity1
sodium arsenateincreases expression1
pyrogallol 1,3-dimethyl etheraffects cotreatment, affects localization, increases expression, decreases expression1
tris(1,3-dichloro-2-propyl)phosphatedecreases expression1
sodium arsenitedecreases expression1
potassium chromate(VI)increases expression1
benzamidedecreases activity1
di-n-butylphosphoric acidaffects expression1
alvocidibaffects binding1
vanillinaffects binding1
acylineincreases expression1
entinostatincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
procyanidin B1affects cotreatment, decreases activity1
nutlin 3affects cotreatment, increases expression, increases secretion1
bisphenol Bincreases expression1
p-coumaric acidaffects cotreatment, decreases activity1
abrinedecreases expression1

ChEMBL screening assays

58 unique, capped per target: 58 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1027304BindingInhibition of human liver glycogen phosphorylase a by coupled kinetic fluorescent intensity assayAnthranilimide based glycogen phosphorylase inhibitors for the treatment of type 2 diabetes. Part 3: X-ray crystallographic characterization, core and urea optimization and in vivo efficacy. — Bioorg Med Chem Lett

Clinical trials (associated diseases)

32 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT02782741PHASE3COMPLETEDStudy to Compare the Efficacy and Safety of Enzyme Replacement Therapies Avalglucosidase Alfa and Alglucosidase Alfa Administered Every Other Week in Patients With Late-onset Pompe Disease Who Have Not Been Previously Treated for Pompe Disease
NCT04808505PHASE3RECRUITINGA Study to Evaluate the Safety, Efficacy, PK, PD and Immunogenicity of Cipaglucosidase Alfa/Miglustat in IOPD Subjects Aged 0 to <18
NCT00765414PHASE2COMPLETEDExtension Study of Long-term Safety and Efficacy of Myozyme for a Single Patient With Pompe Disease Who Were Previously Enrolled in Genzyme Sponsored ERT Studies.
NCT02032524PHASE2COMPLETEDAvalglucosidase Alfa Extension Study
NCT03019406PHASE2ACTIVE_NOT_RECRUITINGA Study to Assess Safety and Efficacy of Avalglucosidase Alfa Administered Every Other Week in Pediatric Patients With Infantile-onset Pompe Disease Previously Treated With Alglucosidase Alfa
NCT06130228PHASE2UNKNOWNNutritional Therapy in Late-onset Pompe Disease
NCT02385162Not specifiedWITHDRAWNBiomarker for Glycogen Storage Diseases (BioGlycogen)
NCT04454216Not specifiedRECRUITINGGSD VI and GSD IX Natural History
NCT05095727PHASE1/PHASE2ACTIVE_NOT_RECRUITINGA Study of mRNA-3745 in Adult and Pediatric Participants With Glycogen Storage Disease Type 1a (GSD1a)
NCT00001342Not specifiedCOMPLETEDStudy of Glycogen Storage Disease and Associated Disorders
NCT00566878Not specifiedCOMPLETEDPompe Lactation Sub-Registry
NCT01461304Not specifiedNO_LONGER_AVAILABLECompassionate Use of Triheptanoin (C7) for Inherited Disorders of Energy Metabolism
NCT01793168Not specifiedRECRUITINGRare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford
NCT02057731Not specifiedCOMPLETEDStudy of Glycogen Storage Disease Expression in Carriers
NCT02176096Not specifiedCOMPLETEDComparison of the Effect of a Novel Starch (Glycosade) Versus Gastrostomy Tube-Dextrose Infusion on Overnight Euglycaemia Control in Children With Glycogen Storage Disease Type I: Open Label Demonstration Trial
NCT02318966Not specifiedCOMPLETEDGlycosade v UCCS in the Dietary Management of Hepatic GSD
NCT02338817Not specifiedTERMINATEDClinical Evaluation of a Non-Invasive Hypoglycemia Detector in a Glycogen Storage Disease Population
NCT03255213Not specifiedCOMPLETEDLingual Muscle Training in Late-Onset Pompe Disease (LOPD)
NCT03564561Not specifiedRECRUITINGNatural History of Pompe Disease
NCT03655223Not specifiedENROLLING_BY_INVITATIONEarly Check: Expanded Screening in Newborns
NCT04292938Not specifiedCOMPLETEDMcArdle Disease Treatment by Ketogenic Diet
NCT04399694Not specifiedCOMPLETEDIdentification and Characterization of Novel Non-Coding Variants That Contribute to Genetic Disorders
NCT04929002Not specifiedACTIVE_NOT_RECRUITINGCarbon-13 Magnetic Resonance Spectroscopy in Glycogen Storage Diseases
NCT05199246Not specifiedCOMPLETEDAssessment of Safety and Acute Effects of a Lower-limb Powered Dermoskeleton in Patients With Neuromuscular Disorders
NCT05200702Not specifiedCOMPLETEDAssessment of Safety and Acute Effects of a Knee-hip Powered Soft Exoskeleton in Patients With Neuromuscular Disorders
NCT05687474Not specifiedCOMPLETEDBaby Detect : Genomic Newborn Screening
NCT06396546Not specifiedRECRUITING‘Glycogen Storage Diseases (GSDs) in Indian Children- Establishing an Indian GSD (I-GSD) Registry’
NCT06795152Not specifiedRECRUITINGRare Glycogen Storage Diseases Natural History Study
NCT06813443Not specifiedRECRUITINGCharacterization of Patients With Cardiomyopathy to Identify Critical Patients Candidates for Cardiac Transplantation
NCT07136844Not specifiedRECRUITINGGait Analysis Parameter and Upper Limb Evaluation in Adult Patients With Neurological or Metabolic Pathology
NCT07336394Not specifiedRECRUITINGPrecision Diagnosis and Risk Stratification of Rare Cardiomyopathies Based on Novel Cardiac Magnetic Resonance Techniques
NCT07614139Not specifiedCOMPLETEDContinuous Glucose Monitoring Alerts, Accuracy, and Patient Outcomes in Adults With Inherited Metabolic Disorders