R3HDM2-DT

Summary

R3HDM2-DT (R3HDM2 divergent transcript, HGNC:55457) is a long non-coding RNA gene on chromosome 12q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55457
Approved symbol	R3HDM2-DT
Name	R3HDM2 divergent transcript
Location	12q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258001
Ensembl biotype	lncRNA
Entrez	120766140
RNAcentral	URS00003B718F — lncRNA, 548 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000547552, ENST00000727995

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547552 — 2 exons

Exon	Start	End
ENSE00002375010	57431116	57431430
ENSE00002380130	57433703	57433935

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 88.95.

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.40	gold quality
bone marrow cell	CL:0002092	66.90	silver quality
liver	UBERON:0002107	65.84	gold quality
ventricular zone	UBERON:0003053	65.57	gold quality
stromal cell of endometrium	CL:0002255	63.47	gold quality
ganglionic eminence	UBERON:0004023	63.06	gold quality
right lobe of liver	UBERON:0001114	61.50	gold quality
granulocyte	CL:0000094	60.33	gold quality
bone marrow	UBERON:0002371	59.90	gold quality
islet of Langerhans	UBERON:0000006	57.05	gold quality
leukocyte	CL:0000738	54.18	gold quality
lymph node	UBERON:0000029	53.42	gold quality
adrenal tissue	UBERON:0018303	53.08	gold quality
monocyte	CL:0000576	52.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.82	gold quality
blood	UBERON:0000178	52.34	silver quality
prefrontal cortex	UBERON:0000451	51.70	gold quality
calcaneal tendon	UBERON:0003701	50.73	silver quality
gall bladder	UBERON:0002110	50.28	gold quality
endometrium	UBERON:0001295	49.99	gold quality
muscle of leg	UBERON:0001383	49.77	gold quality
gastrocnemius	UBERON:0001388	49.33	gold quality
body of pancreas	UBERON:0001150	48.65	gold quality
fundus of stomach	UBERON:0001160	48.65	gold quality
primary visual cortex	UBERON:0002436	48.43	gold quality
tonsil	UBERON:0002372	48.39	gold quality
testis	UBERON:0000473	48.03	gold quality
right coronary artery	UBERON:0001625	47.91	gold quality
lower esophagus mucosa	UBERON:0035834	47.46	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.