RABGAP1L-DT

Summary

RABGAP1L-DT (RABGAP1L divergent transcript, HGNC:54296) is a long non-coding RNA gene on chromosome 1q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54296
Approved symbol	RABGAP1L-DT
Name	RABGAP1L divergent transcript
Location	1q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227373
Ensembl biotype	lncRNA
Entrez	102724601
RNAcentral	URS000029FF6C — lncRNA, 448 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 47 — 47 lncRNA

ENST00000419983, ENST00000426899, ENST00000430592, ENST00000454467, ENST00000656058, ENST00000659243, ENST00000665650, ENST00000791903, ENST00000791904, ENST00000791905, ENST00000791906, ENST00000791907, ENST00000791908, ENST00000791909, ENST00000791910, ENST00000791911, ENST00000791912, ENST00000791913, ENST00000791914, ENST00000791915, ENST00000791916, ENST00000791917, ENST00000791918, ENST00000791919, ENST00000791920, ENST00000791921, ENST00000791922, ENST00000791923, ENST00000791924, ENST00000791925, ENST00000791926, ENST00000791927, ENST00000791928, ENST00000791929, ENST00000791930, ENST00000791931, ENST00000791932, ENST00000791933, ENST00000791934, ENST00000791935, ENST00000791936, ENST00000791937, ENST00000791938, ENST00000791939, ENST00000791940, ENST00000791941, ENST00000791942

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419983 — 4 exons

Exon	Start	End
ENSE00001591475	174122084	174122192
ENSE00001657562	174159917	174160004
ENSE00001730425	174155627	174155697
ENSE00001801752	174115383	174115649

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 84.40.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.40	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.13	gold quality
testis	UBERON:0000473	69.29	gold quality
right testis	UBERON:0004534	68.26	gold quality
bone marrow	UBERON:0002371	67.63	gold quality
left testis	UBERON:0004533	67.29	gold quality
bone marrow cell	CL:0002092	66.72	silver quality
hindlimb stylopod muscle	UBERON:0004252	66.45	gold quality
ventricular zone	UBERON:0003053	64.88	gold quality
sural nerve	UBERON:0015488	64.60	silver quality
granulocyte	CL:0000094	63.77	gold quality
heart left ventricle	UBERON:0002084	62.73	gold quality
duodenum	UBERON:0002114	62.40	gold quality
tonsil	UBERON:0002372	62.31	gold quality
apex of heart	UBERON:0002098	62.22	gold quality
right atrium auricular region	UBERON:0006631	61.61	gold quality
mucosa of transverse colon	UBERON:0004991	61.07	gold quality
cortical plate	UBERON:0005343	61.04	gold quality
heart	UBERON:0000948	60.94	gold quality
ganglionic eminence	UBERON:0004023	60.53	gold quality
blood	UBERON:0000178	60.51	gold quality
cortex of kidney	UBERON:0001225	60.12	gold quality
lymph node	UBERON:0000029	59.89	gold quality
muscle tissue	UBERON:0002385	59.59	gold quality
skeletal muscle tissue	UBERON:0001134	59.43	gold quality
leukocyte	CL:0000738	59.24	gold quality
kidney	UBERON:0002113	59.14	gold quality
stromal cell of endometrium	CL:0002255	59.12	gold quality
monocyte	CL:0000576	58.87	gold quality
adult mammalian kidney	UBERON:0000082	58.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.20

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.