RABGAP1L-IT1

Summary

RABGAP1L-IT1 (RABGAP1L intronic transcript 1, HGNC:41471) is a long non-coding RNA gene on chromosome 1q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41471
Approved symbol	RABGAP1L-IT1
Name	RABGAP1L intronic transcript 1
Location	1q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223525
Ensembl biotype	lncRNA
Entrez	106480742
RNAcentral	URS000046F499 — lncRNA, 737 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000414890

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414890 — 2 exons

Exon	Start	End
ENSE00001441049	174897777	174897996
ENSE00001669114	174896958	174897474

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 90.20.

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.20	gold quality
colonic epithelium	UBERON:0000397	81.12	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.98	silver quality
testis	UBERON:0000473	75.03	gold quality
tonsil	UBERON:0002372	74.83	gold quality
bone marrow cell	CL:0002092	72.84	gold quality
skeletal muscle tissue	UBERON:0001134	70.52	gold quality
muscle tissue	UBERON:0002385	68.46	silver quality
bone marrow	UBERON:0002371	63.99	silver quality
stromal cell of endometrium	CL:0002255	60.92	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.48	gold quality
thoracic mammary gland	UBERON:0005200	57.30	gold quality
liver	UBERON:0002107	56.70	gold quality
gall bladder	UBERON:0002110	55.77	gold quality
endometrium	UBERON:0001295	55.60	gold quality
monocyte	CL:0000576	55.42	gold quality
blood	UBERON:0000178	55.38	gold quality
myometrium	UBERON:0001296	54.45	gold quality
urinary bladder	UBERON:0001255	54.16	gold quality
primary visual cortex	UBERON:0002436	54.09	gold quality
kidney	UBERON:0002113	53.97	gold quality
lymph node	UBERON:0000029	52.56	gold quality
islet of Langerhans	UBERON:0000006	52.54	gold quality
cortex of kidney	UBERON:0001225	52.49	gold quality
prefrontal cortex	UBERON:0000451	51.99	gold quality
duodenum	UBERON:0002114	51.79	gold quality
calcaneal tendon	UBERON:0003701	51.22	silver quality
uterine cervix	UBERON:0000002	50.94	silver quality
adrenal gland	UBERON:0002369	50.07	gold quality
pancreas	UBERON:0001264	50.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.24

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.