RAD21
gene geneOn this page
Also known as KIAA0078hHR21SCC1
Summary
RAD21 (RAD21 cohesin complex component, HGNC:9811) is a protein-coding gene on chromosome 8q24.11, encoding Double-strand-break repair protein rad21 homolog (O60216). As a member of the cohesin complex, involved in sister chromatid cohesion from the time of DNA replication in S phase to their segregation in mitosis, a function that is essential for proper chromosome segregation, post-replicative DNA repair, and the prevention of inappropriate…. It is a common-essential gene (DepMap: required in 99.5% of cancer cell lines) and haploinsufficient (ClinGen: sufficient evidence).
The protein encoded by this gene is highly similar to the gene product of Schizosaccharomyces pombe rad21, a gene involved in the repair of DNA double-strand breaks, as well as in chromatid cohesion during mitosis. This protein is a nuclear phospho-protein, which becomes hyperphosphorylated in cell cycle M phase. The highly regulated association of this protein with mitotic chromatin specifically at the centromere region suggests its role in sister chromatid cohesion in mitotic cells.
Source: NCBI Gene 5885 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Cornelia de Lange syndrome (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 555 total — 40 pathogenic, 19 likely-pathogenic (top 6% of genes corpus-wide)
- Regional missense constraint (gnomAD): 2 of 5 regions constrained (≈34% of expected missense variation)
- GTEx eGene: eQTL in 27 tissues, sQTL in 3 (q < 0.05)
- Phenotypes (HPO): 160
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 2 cancer types (inferred from mutation patterns)
- Cancer dependency (DepMap): dependent in 99.5% of screened cell lines (common-essential)
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- Constraint (gnomAD): pLI 1.00 (loss-of-function intolerant), LOEUF 0.34 (highly constrained)
- MANE Select transcript:
NM_006265 - Interaction hub: 4,476 STRING partners (top 1% of genes corpus-wide)
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9811 |
| Approved symbol | RAD21 |
| Name | RAD21 cohesin complex component |
| Location | 8q24.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0078, hHR21, SCC1 |
| Ensembl gene | ENSG00000164754 |
| Ensembl biotype | protein_coding |
| OMIM | 606462 |
| Entrez | 5885 |
Gene structure
Transcript identifiers
Ensembl transcripts: 43 — 24 protein_coding, 12 retained_intron, 6 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
MANE Select: ENST00000297338
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 3, TSL 3: 3, TSL 4: 2
ENST00000297338, ENST00000517485, ENST00000517749, ENST00000518055, ENST00000519469, ENST00000519837, ENST00000520992, ENST00000522699, ENST00000523547, ENST00000523986, ENST00000685972, ENST00000686622, ENST00000687122, ENST00000687358, ENST00000687902, ENST00000688033, ENST00000689124, ENST00000689154, ENST00000689504, ENST00000690166, ENST00000690189, ENST00000900008, ENST00000900009, ENST00000900010, ENST00000900011, ENST00000927337, ENST00000927338, ENST00000927339, ENST00000927340, ENST00000927341, ENST00000958516, ENST00000958517, ENST00000958518, ENST00000958519, ENST00001006742, ENST00001011649, ENST00001011654, ENST00001074827, ENST00001074829, ENST00001109555, ENST00001129034, ENST00001129035, ENST00001135351
RefSeq mRNA: 1 — MANE Select: NM_006265
NM_006265
CCDS: CCDS6321
Canonical transcript exons
ENST00000297338 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001087180 | 116848946 | 116849029 |
| ENSE00001087181 | 116857267 | 116857473 |
| ENSE00001087182 | 116856646 | 116856771 |
| ENSE00001087184 | 116851948 | 116852096 |
| ENSE00001087186 | 116856166 | 116856288 |
| ENSE00001087189 | 116850618 | 116850767 |
| ENSE00001087190 | 116854245 | 116854468 |
| ENSE00001087191 | 116852549 | 116852708 |
| ENSE00001276365 | 116845934 | 116847691 |
| ENSE00001356828 | 116874611 | 116874776 |
| ENSE00003464321 | 116861841 | 116861940 |
| ENSE00003464650 | 116866586 | 116866761 |
| ENSE00003525419 | 116863130 | 116863259 |
| ENSE00003579379 | 116858352 | 116858458 |
Expression profiles
Bgee: expression breadth ubiquitous, 301 present calls, max score 99.47.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 84.2621 / max 1535.8367, expressed in 1822 samples.
Highest expression (Bgee): ventricular zone, ganglionic eminence, superficial temporal artery, endometrium epithelium, epithelium of nasopharynx.
Genetic regulation across tissues (GTEx eQTL / sQTL)
RAD21 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 27 tissues and its splicing (sQTL) in 3 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 30 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Thyroid | eqtl | 4.9e-26 | -0.49 | 8:116876671:T:A |
| Nerve Tibial | eqtl | 1.4e-21 | -0.17 | 8:116885085:C:T |
| Skin Sun Exposed Lower leg | eqtl | 4.5e-14 | -0.12 | 8:116896606:T:TC |
| Artery Tibial | eqtl | 1.1e-13 | -0.14 | 8:116885085:C:T |
| Skin Not Sun Exposed Suprapubic | eqtl | 4.4e-13 | -0.11 | 8:116846150:G:A |
| Muscle Skeletal | eqtl | 3.0e-12 | -0.19 | 8:116828792:T:A |
| Testis | sqtl | 2.8e-11 | +0.68 | 8:116882227:A:G |
| Breast Mammary Tissue | eqtl | 9.9e-11 | -0.14 | 8:116886972:A:G |
| Artery Aorta | eqtl | 2.5e-10 | -0.14 | 8:116885085:C:T |
| Pituitary | eqtl | 1.4e-08 | -0.21 | 8:116841534:G:C |
| Whole Blood | eqtl | 2.0e-08 | -0.09 | 8:116868416:C:T |
| Esophagus Mucosa | eqtl | 2.1e-07 | -0.08 | 8:116885085:C:T |
| Adipose Subcutaneous | eqtl | 6.4e-07 | -0.08 | 8:116885085:C:T |
| Cells Cultured fibroblasts | eqtl | 1.0e-06 | -0.08 | 8:116846367:C:CAT |
| Esophagus Muscularis | eqtl | 2.6e-06 | -0.10 | 8:116919448:T:C |
| Lung | eqtl | 6.3e-06 | -0.11 | 8:116885085:C:T |
| Colon Transverse | eqtl | 1.4e-05 | -0.11 | 8:116846367:C:CAT |
| Heart Atrial Appendage | eqtl | 5.4e-05 | -0.09 | 8:116846367:C:CAT |
| Heart Left Ventricle | eqtl | 9.5e-05 | -0.09 | 8:116891826:A:G |
| Testis | eqtl | 2.6e-04 | -0.11 | 8:116895581:G:A |
FANTOM5 promoters
showing 10 of 14 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 94550 | 84.2621 | 1822 |
| 94543 | 5.2653 | 1378 |
| 94549 | 3.1339 | 1109 |
| 94542 | 0.7315 | 177 |
| 94547 | 0.2810 | 112 |
| 94545 | 0.2576 | 132 |
| 94546 | 0.1360 | 41 |
| 94544 | 0.1335 | 36 |
| 94548 | 0.0770 | 25 |
| 94535 | 0.0534 | 2 |
Top tissues by expression
showing 100 of 301 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 99.47 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.04 | gold quality |
| superficial temporal artery | UBERON:0001614 | 98.85 | gold quality |
| endometrium epithelium | UBERON:0004811 | 98.81 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 98.79 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.76 | gold quality |
| cerebellar vermis | UBERON:0004720 | 98.76 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 98.69 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 98.66 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 98.66 | gold quality |
| embryo | UBERON:0000922 | 98.63 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 98.53 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 98.53 | gold quality |
| seminal vesicle | UBERON:0000998 | 98.51 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 98.47 | gold quality |
| corpus callosum | UBERON:0002336 | 98.44 | gold quality |
| adult organism | UBERON:0007023 | 98.44 | gold quality |
| lower lobe of lung | UBERON:0008949 | 98.38 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 98.34 | gold quality |
| retina | UBERON:0000966 | 98.31 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.29 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 98.20 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.19 | gold quality |
| medulla oblongata | UBERON:0001896 | 98.16 | gold quality |
| thymus | UBERON:0002370 | 98.15 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.13 | gold quality |
| bone marrow | UBERON:0002371 | 98.11 | gold quality |
| bone element | UBERON:0001474 | 98.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 98.10 | gold quality |
| paraflocculus | UBERON:0005351 | 98.06 | gold quality |
| caput epididymis | UBERON:0004358 | 97.99 | gold quality |
| cortical plate | UBERON:0005343 | 97.99 | gold quality |
| frontal pole | UBERON:0002795 | 97.98 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.95 | gold quality |
| corpus epididymis | UBERON:0004359 | 97.93 | gold quality |
| lymph node | UBERON:0000029 | 97.92 | gold quality |
| pons | UBERON:0000988 | 97.92 | gold quality |
| oocyte | CL:0000023 | 97.91 | gold quality |
| parietal pleura | UBERON:0002400 | 97.90 | gold quality |
| oral cavity | UBERON:0000167 | 97.85 | gold quality |
| heart right ventricle | UBERON:0002080 | 97.85 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 97.82 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 97.81 | gold quality |
| ventral tegmental area | UBERON:0002691 | 97.76 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 97.75 | gold quality |
| jejunum | UBERON:0002115 | 97.74 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 97.74 | gold quality |
| renal medulla | UBERON:0000362 | 97.73 | gold quality |
| cauda epididymis | UBERON:0004360 | 97.73 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 97.69 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.68 | gold quality |
| penis | UBERON:0000989 | 97.68 | gold quality |
| colonic mucosa | UBERON:0000317 | 97.66 | gold quality |
| secondary oocyte | CL:0000655 | 97.65 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 97.62 | gold quality |
| bone marrow cell | CL:0002092 | 97.60 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 97.60 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.57 | gold quality |
| visceral pleura | UBERON:0002401 | 97.57 | gold quality |
| superior surface of tongue | UBERON:0007371 | 97.56 | gold quality |
| urethra | UBERON:0000057 | 97.53 | gold quality |
| pleura | UBERON:0000977 | 97.53 | gold quality |
| mammary duct | UBERON:0001765 | 97.51 | gold quality |
| synovial joint | UBERON:0002217 | 97.48 | gold quality |
| pylorus | UBERON:0001166 | 97.47 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 97.43 | gold quality |
| rectum | UBERON:0001052 | 97.41 | gold quality |
| tonsil | UBERON:0002372 | 97.39 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 97.39 | gold quality |
| caecum | UBERON:0001153 | 97.34 | gold quality |
| midbrain | UBERON:0001891 | 97.33 | gold quality |
| myocardium | UBERON:0002349 | 97.33 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.30 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.30 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 97.29 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 97.28 | gold quality |
| endometrium | UBERON:0001295 | 97.25 | gold quality |
| skin of hip | UBERON:0001554 | 97.25 | gold quality |
| substantia nigra | UBERON:0002038 | 97.25 | gold quality |
| globus pallidus | UBERON:0001875 | 97.22 | gold quality |
| spinal cord | UBERON:0002240 | 97.21 | gold quality |
| pericardium | UBERON:0002407 | 97.21 | gold quality |
| cardia of stomach | UBERON:0001162 | 97.20 | gold quality |
| upper leg skin | UBERON:0004262 | 97.20 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 97.19 | gold quality |
| mammary gland | UBERON:0001911 | 97.17 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 97.16 | gold quality |
| parietal lobe | UBERON:0001872 | 97.15 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 97.15 | gold quality |
| vermiform appendix | UBERON:0001154 | 97.12 | gold quality |
| postcentral gyrus | UBERON:0002581 | 97.10 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 97.07 | gold quality |
| urinary bladder | UBERON:0001255 | 97.02 | gold quality |
| vastus lateralis | UBERON:0001379 | 97.00 | gold quality |
| right lung | UBERON:0002167 | 97.00 | gold quality |
| tongue | UBERON:0001723 | 96.97 | gold quality |
| gingiva | UBERON:0001828 | 96.97 | gold quality |
| placenta | UBERON:0001987 | 96.93 | gold quality |
| medial globus pallidus | UBERON:0002477 | 96.93 | gold quality |
| hypothalamus | UBERON:0001898 | 96.92 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 37.08 |
| E-CURD-122 | yes | 23.02 |
| E-GEOD-125970 | yes | 16.52 |
| E-MTAB-6678 | yes | 8.21 |
| E-MTAB-10553 | yes | 7.48 |
| E-GEOD-106540 | no | 818.43 |
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Low tissue specificity
showing 60 of 80 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Thymus | tissue | 151.4 | |
| Corpus callosum | tissue | 140.5 | |
| Hippocampal formation | tissue | 138.8 | |
| Thalamus | tissue | 135.3 | |
| Superior colliculi | tissue | 128.7 | |
| Midbrain | tissue | 126.3 | |
| Cerebral cortex | tissue | 124.1 | high |
| Motor cortex | tissue | 124.1 | |
| Prefrontal cortex | tissue | 115.8 | |
| Bone marrow | tissue | 115.5 | high |
| Retrosplenial cortex | tissue | 111.7 | |
| Amygdala | tissue | 111.3 | |
| Hypothalamus | tissue | 110.9 | |
| Pons | tissue | 110.0 | |
| Entorhinal cortex | tissue | 107.8 | |
| Retrosplenial and cingulate cortex | tissue | 106.4 | |
| Cerebellum | tissue | 105.6 | high |
| Insular cortex | tissue | 104.1 | |
| Occipital cortex | tissue | 103.8 | |
| Somatosensory cortex | tissue | 102.7 | |
| Tonsil | tissue | 102.2 | high |
| Lymph node | tissue | 101.7 | high |
| Septum | tissue | 97.2 | |
| Substantia nigra | tissue | 97.0 | |
| Temporal cortex | tissue | 95.6 | |
| Periaqueductal gray | tissue | 94.6 | |
| Medulla oblongata | tissue | 93.3 | |
| Putamen | tissue | 92.1 | |
| Olfactory bulb | tissue | 90.2 | |
| Ventral forebrain | tissue | 89.6 | |
| Spinal cord | tissue | 87.8 | |
| Tongue | tissue | 86.9 | |
| Retina | tissue | 84.9 | |
| Heart muscle | tissue | 80.8 | medium |
| Nucleus accumbens | tissue | 77.5 | |
| Locus coeruleus | tissue | 77.1 | |
| Placenta | tissue | 76.3 | high |
| Frontal cortex | tissue | 75.2 | |
| Caudate putamen | tissue | 73.7 | |
| Parathyroid gland | tissue | 73.5 | high |
| Testis | tissue | 73.4 | high |
| Basal ganglia | tissue | 72.0 | high |
| Adrenal gland | tissue | 70.7 | high |
| Rectum | tissue | 69.6 | high |
| Thyroid gland | tissue | 69.3 | high |
| Hippocampus | tissue | 68.1 | high |
| Skeletal muscle | tissue | 66.7 | high |
| Adipose tissue | tissue | 65.2 | high |
| Choroid plexus | tissue | 64.9 | |
| Colon | tissue | 62.9 | high |
| Ovary | tissue | 62.2 | high |
| Appendix | tissue | 62.1 | high |
| Kidney | tissue | 61.7 | high |
| Esophagus | tissue | 61.3 | high |
| Spleen | tissue | 60.8 | high |
| Postcentral gyrus | tissue | 60.1 | |
| Breast | tissue | 59.7 | high |
| Liver | tissue | 58.1 | low |
| Lung | tissue | 56.1 | high |
| Seminal vesicle | tissue | 55.8 | high |
Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — White matter (140.5), Subiculum (138.8), Corpus callosum, genu (white matter) (131.6), Parieto-temporal junction (white matter) (126.2), Cerebellar white matter (122.8).
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
2 targets:
| Target | Regulation |
|---|---|
| APOB | Repression |
| RUNX1 | Repression |
Upstream regulators (CollecTRI, top): CTCF, ESR1, MYC, NR5A1, TFAP2A, TFAP2C
miRNA regulators (miRDB)
Targeting RAD21 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 153 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
Functional genomics
gnomAD constraint: pLI 1, LOEUF 0.341, missense Z 3.65 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000297338 splits into 5 regions with different missense tolerance; 2 are missense-constrained (≈34% of the expected missense variation). Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 8:116,847,503–116,847,645 | 34 / 59.9 | 0.57 | no |
| 8:116,847,646–116,852,659 | 225 / 218.3 | 1.03 | no |
| 8:116,852,660–116,856,197 | 42 / 117.2 | 0.36 | yes (p 3.7e-12) |
| 8:116,856,198–116,861,863 | 165 / 229.6 | 0.72 | no |
| 8:116,861,864–116,866,729 | 27 / 144.1 | 0.19 | yes (p 1.8e-22) |
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map | |||
| DepMap (CRISPR cell-line fitness): dependent in 99.5% of screened cell lines, common-essential. |
Most-dependent cell lines (DepMap gene-effect, lower = stronger; ≤ −0.5 shown): KLE (-2.844), NMC-G1 (-2.453), NCI-H226 (-2.367), RERF-GC-1B (-2.358), JM1 (-2.267), VCaP (-2.244), K-562 (-2.222), KP-N-YN (-2.217), ONCO-DG-1 (-2.204), KU812 (-2.2), NCI-H1092 (-2.191), TUHR10TKB (-2.174), SK-N-BE(2) (-2.16), SNU-449 (-2.125), IMR-32 (-2.109).
Literature-anchored findings (GeneRIF, showing 40)
- Caspase proteolysis of the cohesin component RAD21 promotes apoptosis (PMID:11875078)
- RAD21 subunit of the cohesin complex directly interacts with ATPase subunit SNF2; mapping of RAD21, SNF2 and Mi2 binding sites reveals specific association of these three proteins with DNA elements containing Alu sequences (PMID:12198550)
- Scc1 is essential for the association of kinetochores with microtubules. (PMID:12200439)
- plays a role in apoptosis, and its cleavage during apoptosis may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (PMID:12417729)
- RAD21 shows increased expression in clinical prostate carcinomas and is also amplified in 30-40% of xenografts and hormone-refractory tumors. (PMID:14603436)
- Phosphorylation of SA2 is essential for cohesin dissociation during prophase and prometaphase, but is not required for cohesin cleavage by separase. (PMID:15737063)
- RAD21 suppression enhances the antitumor activity of chemotherapeutic agents acting via induction of DNA damage (PMID:15767545)
- The RAD21 gene was closely related to the invasion and metastasis of cancer cells. (PMID:16416296)
- As compared to the telomerase group, the alternative lengthening of telomeres group presents higher expression of hRad21, thinner tumor invasion depth, and higher survival rate. (PMID:18197499)
- These data argue that the regulation of the IL-3 and the GM-CSF promoters depends on the positions of their enhancers relative to the conserved CTCF/cohesin-binding sites. (PMID:19158269)
- The depletion of either CTCF or RAD21 disrupts the chromatin loop structure, together with significant changes in the APO expression. (PMID:19322193)
- Ectopic expression of Rad21 repressed CTCF-regulated transcription of KSHV lytic genes. (PMID:19369356)
- hRAD21 was significantly differently expressed in cells maintaining telomere length through a telomerase-independent mechanism, termed the alternative lengthening of telomeres (ALT). (PMID:20364118)
- Rad21 protein depletion causes centrosome defects in interphase and prophase of mitosis. (PMID:20404533)
- Rad21 protein are cleaved by separase are required for the localization of Rad21 to the centrosome. (PMID:20404544)
- RAD21 expression confers poor prognosis and resistance to chemotherapy in high grade luminal, basal and HER2 breast cancers. (PMID:21255398)
- Rad21 cleavage by calpain-1 promotes separation of chromosome arms, which coincides with a calcium-induced partial loss of cohesin at several chromosomal loci. (PMID:21876002)
- RAD21 expression is associated with a poorer prognosis in BRCA2, but not in BRCA1 breast cancers. (PMID:22537934)
- RAD21 mutations cause a human cohesinopathy (PMID:22633399)
- show that the Smc5/6 subunit Mms21 sumoylates multiple lysines of the cohesin subunit Scc1 (PMID:22751501)
- ASURA specifically binds to chromatin when Scc1 is associated with chromatin. (PMID:23548868)
- Rad21 binds to SA proteins through two SA-binding motifs on Rad21. (PMID:23874961)
- -RAD21 and EIF3H, both on chromosome 8q23, CHRAC1 on chromosome 8q24.3 and TANC2 on chromosome 17q23-were confirmed to be driver genes regulating the proliferation/survival of clonogenic breast cancer cells (PMID:24148822)
- This study reports the first intragenic deletion and frameshift mutations identified in RAD21 in two patients presenting with atypical Cornelia de Lange syndrome. (PMID:24378232)
- CTCF and Rad21 act as host cell restriction factors for Kaposi’s sarcoma-associated herpesvirus (KSHV) lytic replication by modulating viral gene transcription. (PMID:24415941)
- RAD21 expression in CRC is associated with aggressive disease especially in KRAS mutant tumours and resistance to chemoradiotherapy. (PMID:24548858)
- Cross-sectional deep-sequencing analysis for clonal hierarchy demonstrated STAG2, SMC3, and RAD21 mutations to be ancestral in 18%, 18%, and 47% of cases, respectively, and each expanded to clonal dominance concordant with disease transformation (PMID:25006131)
- Studied the role of looping in large-scale (supra Mb) folding of human chromosomes by knocking down the gene that codes for CTCF and the one coding for Rad21, an essential subunit of cohesin. (PMID:25299688)
- cohesin’s proposed DNA exit gate is formed by interactions between Scc1 and the coiled-coil region of Smc3. (PMID:25414306)
- Elevated RAD21 expression tracks with reactivation of L1 expression in human sporadic colorectal cancer. (PMID:25464844)
- Some patients with chronic intestinal pseudo-obstruction carry mutations in RAD21 that disrupt the ability of its product to regulate genes such as RUNX1 and APOB. (PMID:25575569)
- found well-positioned CTCF and RAD21 peaks approximately 60-80 bp upstream of the TSS in the unidirectional genes. The peak heights were related to the amount of antisense transcription. Results provide insights into the distribution of histone modifications at promoters and suggest a novel role of CTCF and cohesin as regulators of transcriptional direction. (PMID:25881024)
- Reduced RAD21 destabilizes high-level gene amplification by disrupting pre-replication complex bindings in human cancers with chromosomal instability. (PMID:26420833)
- Data indicate that RAD21 plays an important role in cellular senescence breast cancer cells, mainly through RB1 pathway activation via c-Myc downregulation. (PMID:26529363)
- This study together with previous reports suggests incomplete penetrance associated with RAD21 variants and these individuals may therefore be underdiagnosed. (PMID:27882533)
- With tissue microarrays of hepatocellular carcinoma (HCC) patients, we determined the prognostic values of the core genes in the network and found that RAD21, CDK1, and HDAC2 expression levels were negatively associated with overall survival for HCC patients. (PMID:28434945)
- evidence for a possible pathogenetic role of RAD21 promoter methylation in the development of chronic lymphocytic leukemia. (PMID:29587287)
- depletion of Rad21 in a Pds5-deficient background rescues the phenotype observed upon Pds5 depletion alone. These findings support a model where loss of either component of the cohesin releasin complex perturbs cohesin dynamics on replication forks, hindering fork progression and promoting MRE11-dependent fork slowing (PMID:29917110)
- A subset of PGP9.5- and HuC/D-IR neuronal cell bodies and nerve fibers in the myenteric plexus of human and mouse small intestine also displayed cytoplasmic RAD21 (PMID:30069982)
- We demonstrate that infection of hepatoma cells with HCV leads to up regulation of the expression of the RAD21 cohesin subunit and changes cohesin residency on the chromatin. (PMID:30698808)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rad21a | ENSDARG00000006092 |
| danio_rerio | rad21b | ENSDARG00000035655 |
| mus_musculus | Rad21 | ENSMUSG00000022314 |
| rattus_norvegicus | Rad21 | ENSRNOG00000004420 |
| drosophila_melanogaster | vtd | FBGN0260987 |
| caenorhabditis_elegans | WBGENE00004737 |
Paralogs (2): REC8 (ENSG00000100918), RAD21L1 (ENSG00000244588)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:108016) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 9 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| reduced male fertility | 1 |
| abnormal T cell differentiation | 1 |
| abnormal CD4-positive, alpha beta T cell morphology | 1 |
| decreased double-positive T cell number | 1 |
| abnormal female meiosis | 1 |
| abnormal CD4-positive, alpha-beta T cell physiology | 1 |
| decreased CD4-positive, alpha-beta T cell number | 1 |
| decreased CD8-positive, alpha-beta T cell number | 1 |
| prenatal lethality, incomplete penetrance | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Bos taurus | Q3SWX9 | 98.3% | Diamond |
| Ailuropoda melanoleuca | D2HSB3 | 84.9% | Diamond |
| Xenopus laevis | O93310 | 83.6% | Diamond |
| Schizosaccharomyces pombe 972h- | P30776 | 49.3% | Diamond |
| Arabidopsis thaliana | Q9FQ19 | 49.3% | Diamond |
| Saccharomyces cerevisiae S288C | Q12158 | 35.9% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| AARD | protein-coding | 441376 |
| RAD21-AS1 | ncRNA | 644660 |
| UTP23 | protein-coding | 84294 |
| MIR3610 | ncRNA | 100500914 |
| SLC30A8 | protein-coding | 169026 |
| EIF3H | protein-coding | 8667 |
Protein
Protein identifiers
Double-strand-break repair protein rad21 homolog — O60216 (reviewed: O60216)
Alternative names: Nuclear matrix protein 1, SCC1 homolog
All UniProt accessions (7): A0A8I5KWV3, E5RFV8, E5RG18, E5RIN7, E5RJK5, E5RJW1, O60216
UniProt curated annotations — full annotation on UniProt →
Function. As a member of the cohesin complex, involved in sister chromatid cohesion from the time of DNA replication in S phase to their segregation in mitosis, a function that is essential for proper chromosome segregation, post-replicative DNA repair, and the prevention of inappropriate recombination between repetitive regions. The cohesin complex may also play a role in spindle pole assembly during mitosis. In interphase, cohesins may function in the control of gene expression by binding to numerous sites within the genome. May control RUNX1 gene expression. Binds to and represses APOB gene promoter. May play a role in embryonic gut development, possibly through the regulation of enteric neuron development. May promote apoptosis.
Subunit / interactions. Component of the cohesin complex, which consists of an SMC1A/B and SMC3 heterodimer core and 2 non-Smc subunits RAD21 and STAG1/SA1, STAG2/SA2 or STAG3/SA3. Interacts (via C-terminus) with SMC1A and (via N-terminus) with SMC3; these interactions are direct. The cohesin complex interacts with NUMA1. The cohesin complex also interacts with CDCA5, PDS5A and PDS5B; this interaction might regulate the ability of the cohesin complex to mediate sister chromatid cohesion. The interaction with PDS5B is direct and is stimulated by STAG1/SA1. The cohesin complex interacts with the cohesin loading complex subunits NIPBL/Scc2 (via HEAT repeats) and MAU2/Scc4. NIPBL directly contacts all members of the complex, RAD21, SMC1A/B, SMC3 and STAG1. The cohesin complex interacts with DDX11/ChIR1. Directly interacts with WAPL; this interaction is stimulated by STAG1/SA1. Interacts with the ISWI chromatin remodeling complex component SMARCA5/SNF2h; the interaction is direct. Interacts with the NuRD complex component CHD4; the interaction is direct.
Subcellular location. Nucleus. Nucleus matrix. Chromosome. Centromere. Cytoplasm. Cytoskeleton. Spindle pole Cytoplasm. Cytosol.
Tissue specificity. Expressed in the gut (at protein level).
Post-translational modifications. Cleaved by separase/ESPL1 at the onset of anaphase; this cleavage is required for sister chromatid separation and cytokinesis. Cleaved by caspase-3/CASP3 or caspase-7/CASP7 at the beginning of apoptosis. Phosphorylated; becomes hyperphosphorylated in M phase of cell cycle. The large dissociation of cohesin from chromosome arms during prophase may be partly due to its phosphorylation by PLK1.
Disease relevance. Cornelia de Lange syndrome 4 with or without midline brain defects (CDLS4) [MIM:614701] A form of Cornelia de Lange syndrome, a clinically heterogeneous developmental disorder associated with malformations affecting multiple systems. It is characterized by facial dysmorphisms, abnormal hands and feet, growth delay, cognitive retardation, hirsutism, gastroesophageal dysfunction and cardiac, ophthalmologic and genitourinary anomalies. The disease is caused by variants affecting the gene represented in this entry. Mungan syndrome (MGS) [MIM:611376] An autosomal recessive disease characterized by visceral neuromyopathy, intestinal dysmotility and chronic intestinal pseudoobstruction, megaduodenum, long-segment Barrett esophagus, and a variety of cardiac valve or septal defects such as membranous ventricular septal defect, pulmonary and tricuspid valve regurgitation. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The C-terminal part associates with the ATPase head of SMC1A, while the N-terminal part binds to the ATPase head of SMC3.
Similarity. Belongs to the rad21 family.
RefSeq proteins (1): NP_006256* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006909 | Rad21/Rec8_C_eu | Domain |
| IPR006910 | Rad21_Rec8_N | Domain |
| IPR023093 | ScpA-like_C | Homologous_superfamily |
| IPR036390 | WH_DNA-bd_sf | Homologous_superfamily |
| IPR039781 | Rad21/Rec8-like | Family |
| IPR049589 | NXP1_M-like | Domain |
Pfam: PF04824, PF04825
UniProt features (66 total): helix 19, modified residue 8, region of interest 7, mutagenesis site 7, sequence variant 5, compositionally biased region 4, strand 4, site 3, cross-link 3, turn 3, chain 2, sequence conflict 1
Structure
Experimental structures (PDB)
showing 30 of 37 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 8ROE | Human cohesin SMC1A-HD(shortCC-EQ)/RAD21-C complex - ADP-bound conformation | X-RAY DIFFRACTION | 1.36 |
| 8ROD | Human cohesin SMC1A-HD(shortCC-EQ)/RAD21-C complex - Open/closed P-loop conformation | X-RAY DIFFRACTION | 1.5 |
| 8ROF | Human cohesin SMC1A-HD(shortCC-EQ)/RAD21-C complex - ADP-Mg-bound conformation | X-RAY DIFFRACTION | 1.65 |
| 8RO9 | Human cohesin SMC1A-HD(longCC-EQ)/RAD21-C complex - Open/closed P-loop conformation | X-RAY DIFFRACTION | 1.77 |
| 8ROC | Human cohesin SMC1A-HD(shortCC-EQ)/RAD21-C complex - Apo closed P-loop conformation | X-RAY DIFFRACTION | 1.85 |
| 8RO8 | Human cohesin SMC1A-HD(longCC-EQ)/RAD21-C complex - Apo closed P-loop conformation | X-RAY DIFFRACTION | 1.9 |
| 8ROG | Human cohesin SMC1A-HD(shortCC-EQ)/RAD21-C complex - ATPgS-Mg-bound conformation | X-RAY DIFFRACTION | 1.94 |
| 8RO7 | Human cohesin SMC1A-HD(longCC)/RAD21-C complex - Open/closed P-loop conformation | X-RAY DIFFRACTION | 2.09 |
| 8RO6 | Human cohesin SMC1A-HD(longCC)/RAD21-C complex - Apo closed P-loop conformation | X-RAY DIFFRACTION | 2.2 |
| 8ROK | Human cohesin SMC3-HD(EQ)/RAD21-N complex - ATP-Mg-bound conformation - Form 1 | X-RAY DIFFRACTION | 2.25 |
| 6RRC | Crystal structure of the N-terminal region of human cohesin subunit STAG1 in complex with … | X-RAY DIFFRACTION | 2.37 |
| 8ROA | Human cohesin SMC1A-HD(longCC-EQ)/RAD21-C complex - ADP-bound conformation | X-RAY DIFFRACTION | 2.44 |
| 8ROI | Human cohesin SMC3-HD(EQ)/RAD21-N complex - ADP-bound conformation | X-RAY DIFFRACTION | 2.45 |
| 8ROB | Human cohesin SMC1A-HD(longCC-EQ)/RAD21-C complex - ATPgS-Mg-bound conformation | X-RAY DIFFRACTION | 2.5 |
| 8ROH | Human cohesin SMC3-HD(EQ)/RAD21-N complex - Apo conformation | X-RAY DIFFRACTION | 2.6 |
| 6QNX | Structure of the SA2/SCC1/CTCF complex | X-RAY DIFFRACTION | 2.7 |
| 9HN0 | Cryo-EM structure of human separase bound to SCC1 (310-550 aa) | ELECTRON MICROSCOPY | 2.8 |
| 4PJW | crystal structure of human Stromal Antigen 2 (SA2) in complex with Sister Chromatid … | X-RAY DIFFRACTION | 2.85 |
| 9HMV | Cryo-EM structure of SA2-SCC1 complex at 2.9 angstrom | ELECTRON MICROSCOPY | 2.9 |
| 9HN4 | Cryo-EM structure of human separase bound to phosphorylated SCC1 (310-550 aa) | ELECTRON MICROSCOPY | 2.93 |
| 4PK7 | crystal structure of human Stromal Antigen 2 (SA2) in complex with Sister Chromatid … | X-RAY DIFFRACTION | 2.95 |
| 9HN5 | Cryo-EM structure of human separase bound to phosphorylated SCC1 (100-320 aa) | ELECTRON MICROSCOPY | 2.96 |
| 8ROJ | Human cohesin SMC3-HD/RAD21-N complex - ADP-Mg-bound conformation | X-RAY DIFFRACTION | 3 |
| 4PJU | crystal structure of human Stromal Antigen 2 (SA2) in complex with Sister Chromatid … | X-RAY DIFFRACTION | 3.05 |
| 9HX9 | Structure of the SA2/SCC1/MCM3 complex | X-RAY DIFFRACTION | 3.07 |
| 9EP3 | Structure of the SA2/SCC1/WAPL complex | X-RAY DIFFRACTION | 3.08 |
| 8ROL | Human cohesin SMC3-HD(EQ)/RAD21-N complex - ATP-Mg-bound conformation - Form 2 | X-RAY DIFFRACTION | 3.11 |
| 6RRK | Crystal structure of the central region of human cohesin subunit STAG1 in complex with … | X-RAY DIFFRACTION | 3.17 |
| 7ZJS | Structural basis of centromeric cohesion protection by SGO1 | X-RAY DIFFRACTION | 3.24 |
| 9HMS | Cryo-EM structure of human separase bound to SCC1 (310-550 aa) and SA2 | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O60216-F1 | 61.49 | 0.20 |
Human Protein Atlas
Protein class: Predicted intracellular proteins, Cancer-related genes, Mutated cancer genes, Mutational cancer driver genes, Disease related genes, Human disease related genes, Congenital malformations, Other congenital malformations, Essential proteins
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): nucleoplasm
Antibody reliability (HPA): IH supported · IF enhanced
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3)
| Position | Role |
|---|---|
| 172–173 | cleavage; by espl1 |
| 279–280 | cleavage; by caspase-3 or caspase-7 |
| 450–451 | cleavage; by espl1 |
Post-translational modifications (11)
| Type | Positions |
|---|---|
| Phosphoserine | 46, 153, 175, 249, 454, 545 |
| Phosphothreonine | 394, 623 |
| Glycyl lysine isopeptide (lys-gly) (interchain with g-cter in sumo2) | 48, 216, 418 |
Mutagenesis-validated functional residues (7)
| Position | Phenotype |
|---|---|
| 1–126 | abolishes interaction with smc1. |
| 126–282 | abolishes binding to smarca5. |
| 172 | abolishes first cleavage by espl1, no effect on nuclear localization. |
| 276–280 | loss of cleavage by caspase-3 or caspase-7. |
| 279 | loss of cleavage by caspase-3 or caspase-7. |
| 282 | no effect on cleavage by caspase-3 or caspase-7. |
| 450 | abolishes second cleavage by espl1, no effect on nuclear localization. |
Function
Pathways and Gene Ontology
Reactome pathways
6 curated (TAS) of 24; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
24 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-2470946 | Cohesin Loading onto Chromatin | curated |
| R-HSA-2468052 | Establishment of Sister Chromatid Cohesion | curated |
| R-HSA-9018519 | Estrogen-dependent gene expression | curated |
| R-HSA-2500257 | Resolution of Sister Chromatid Cohesion | curated |
| R-HSA-3108214 | SUMOylation of DNA damage response and repair proteins | curated |
| R-HSA-2467813 | Separation of Sister Chromatids | curated |
| R-HSA-1640170 | Cell Cycle | — |
| R-HSA-69278 | Cell Cycle, Mitotic | — |
| R-HSA-8939211 | ESR-mediated signaling | — |
| R-HSA-68886 | M Phase | — |
| R-HSA-1500620 | Meiosis | — |
| R-HSA-1221632 | Meiotic synapsis | electronic |
| R-HSA-392499 | Metabolism of proteins | — |
| R-HSA-68882 | Mitotic Anaphase | — |
| R-HSA-2555396 | Mitotic Metaphase and Anaphase | — |
| R-HSA-68877 | Mitotic Prometaphase | — |
| R-HSA-68884 | Mitotic Telophase/Cytokinesis | — |
| R-HSA-597592 | Post-translational protein modification | — |
| R-HSA-1474165 | Reproduction | — |
| R-HSA-69242 | S Phase | — |
| R-HSA-3108232 | SUMO E3 ligases SUMOylate target proteins | — |
| R-HSA-2990846 | SUMOylation | — |
| R-HSA-162582 | Signal Transduction | — |
| R-HSA-9006931 | Signaling by Nuclear Receptors | — |
MSigDB gene sets: 742 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, MORF_MTA1, GOBP_CHROMOSOME_ORGANIZATION, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, FREAC2_01, MORF_MBD4, TGCGCANK_UNKNOWN, REACTOME_MEIOTIC_SYNAPSIS, GOBP_REGULATION_OF_NUCLEAR_DIVISION, GOBP_CELL_CYCLE_PHASE_TRANSITION, GEORGES_CELL_CYCLE_MIR192_TARGETS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, MORF_RAD21
GO Biological Process (26): response to hypoxia (GO:0001666), double-strand break repair (GO:0006302), DNA recombination (GO:0006310), DNA-templated transcription (GO:0006351), regulation of transcription by RNA polymerase II (GO:0006357), apoptotic process (GO:0006915), chromosome segregation (GO:0007059), sister chromatid cohesion (GO:0007062), reciprocal meiotic recombination (GO:0007131), negative regulation of G2/M transition of mitotic cell cycle (GO:0010972), negative regulation of interleukin-1 beta production (GO:0032691), negative regulation of tumor necrosis factor production (GO:0032720), positive regulation of interleukin-10 production (GO:0032733), establishment of mitotic sister chromatid cohesion (GO:0034087), establishment of meiotic sister chromatid cohesion (GO:0034089), negative regulation of glial cell apoptotic process (GO:0034351), negative regulation of neuron apoptotic process (GO:0043524), negative regulation of mitotic metaphase/anaphase transition (GO:0045841), positive regulation of sister chromatid cohesion (GO:0045876), cell division (GO:0051301), protein localization to chromatin (GO:0071168), replication-born double-strand break repair via sister chromatid exchange (GO:1990414), DNA repair (GO:0006281), DNA damage response (GO:0006974), positive regulation of gene expression (GO:0010628), negative regulation of gene expression (GO:0010629)
GO Molecular Function (6): cis-regulatory region sequence-specific DNA binding (GO:0000987), chromatin binding (GO:0003682), lncRNA binding (GO:0106222), DNA-binding transcription factor binding (GO:0140297), DNA binding (GO:0003677), protein binding (GO:0005515)
GO Cellular Component (12): chromosome, centromeric region (GO:0000775), chromatin (GO:0000785), condensed nuclear chromosome (GO:0000794), spindle pole (GO:0000922), nucleus (GO:0005634), nucleoplasm (GO:0005654), chromosome (GO:0005694), cytosol (GO:0005829), cohesin complex (GO:0008278), membrane (GO:0016020), nuclear matrix (GO:0016363), meiotic cohesin complex (GO:0030893)
Reactome top-level categories
15 top-level categories:
| Category | Pathways |
|---|---|
| M Phase | 3 |
| Meiosis | 1 |
| Mitotic Anaphase | 1 |
| S Phase | 1 |
| Mitotic Telophase/Cytokinesis | 1 |
| Mitotic Prometaphase | 1 |
| SUMO E3 ligases SUMOylate target proteins | 1 |
| ESR-mediated signaling | 1 |
| Reproduction | 1 |
| Cell Cycle | 1 |
| Post-translational protein modification | 1 |
| SUMOylation | 1 |
| Metabolism of proteins | 1 |
| Mitotic Metaphase and Anaphase | 1 |
| Cell Cycle, Mitotic | 1 |
GO top-level categories
showing 60 of 67 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| cell cycle process | 2 |
| negative regulation of mitotic cell cycle phase transition | 2 |
| establishment of sister chromatid cohesion | 2 |
| negative regulation of apoptotic process | 2 |
| binding | 2 |
| chromosome | 2 |
| nuclear lumen | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| DNA repair | 1 |
| DNA metabolic process | 1 |
| gene expression | 1 |
| RNA biosynthetic process | 1 |
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| chromosome organization | 1 |
| meiosis I | 1 |
| reciprocal homologous recombination | 1 |
| meiotic cell cycle process | 1 |
| G2/M transition of mitotic cell cycle | 1 |
| regulation of G2/M transition of mitotic cell cycle | 1 |
| negative regulation of cell cycle G2/M phase transition | 1 |
| interleukin-1 beta production | 1 |
| regulation of interleukin-1 beta production | 1 |
| negative regulation of interleukin-1 production | 1 |
| tumor necrosis factor production | 1 |
| regulation of tumor necrosis factor production | 1 |
| negative regulation of tumor necrosis factor superfamily cytokine production | 1 |
| positive regulation of cytokine production | 1 |
| interleukin-10 production | 1 |
| regulation of interleukin-10 production | 1 |
| mitotic cell cycle | 1 |
| mitotic sister chromatid cohesion | 1 |
| mitotic cell cycle process | 1 |
| meiotic sister chromatid cohesion | 1 |
| glial cell apoptotic process | 1 |
| regulation of glial cell apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| metaphase/anaphase transition of mitotic cell cycle | 1 |
| regulation of mitotic metaphase/anaphase transition | 1 |
| negative regulation of mitotic nuclear division | 1 |
| negative regulation of metaphase/anaphase transition of cell cycle | 1 |
| negative regulation of mitotic sister chromatid separation | 1 |
| sister chromatid cohesion | 1 |
| regulation of sister chromatid cohesion | 1 |
| positive regulation of cell cycle process | 1 |
| positive regulation of chromosome organization | 1 |
| cellular process | 1 |
| transcription cis-regulatory region binding | 1 |
| RNA binding | 1 |
| transcription factor binding | 1 |
| nucleic acid binding | 1 |
| chromosomal region | 1 |
| nuclear chromosome | 1 |
| condensed chromosome | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 7 of 44 annotations. The rest are phylogenetic / computational / electronic (IEA).
7 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| positive regulation of sister chromatid cohesion | BP | mutant phenotype |
| protein localization to chromatin | BP | mutant phenotype |
| regulation of transcription by RNA polymerase II | BP | direct assay |
| cohesin complex | CC | direct assay |
| membrane | CC | high-throughput assay |
| nuclear matrix | CC | direct assay |
| nucleoplasm | CC | direct assay |
Protein interactions and networks
STRING
showing 15 of 4,476 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RAD21 | SMC3 | Q9UQE7 | 993 |
| RAD21 | ESPL1 | Q14674 | 982 |
| RAD21 | SMC1A | Q14683 | 971 |
| RAD21 | NIPBL | Q6KC79 | 970 |
| RAD21 | STAG2 | Q8N3U4 | 966 |
| RAD21 | STAG1 | Q8WVM7 | 958 |
| RAD21 | PDS5A | Q29RF7 | 953 |
| RAD21 | WAPL | Q7Z5K2 | 937 |
| RAD21 | SMC4 | Q9NTJ3 | 884 |
| RAD21 | CTCF | P49711 | 875 |
| RAD21 | ESCO1 | Q5FWF5 | 872 |
| RAD21 | SGO1 | Q5FBB7 | 851 |
| RAD21 | ESCO2 | Q56NI9 | 826 |
| RAD21 | SGO2 | Q562F6 | 807 |
| RAD21 | CHTF18 | Q8WVB6 | 806 |
IntAct
Human interaction partners of RAD21 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
showing 30 of 38 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| STAG2 | association | 0.970 | 15 |
| SMC3 | physical association | 0.960 | 10 |
| SMC1A | physical association | 0.930 | 15 |
| STAG1 | association | 0.930 | 7 |
| WAPL | colocalization | 0.910 | 14 |
| PDS5B | association | 0.860 | 6 |
| PDS5A | association | 0.860 | 3 |
| SGO1 | physical association | 0.740 | 6 |
| SSU72 | physical association | 0.670 | 7 |
| FHL3 | physical association | 0.670 | 4 |
| CDCA5 | association | 0.640 | 3 |
| ESPL1 | direct interaction | 0.620 | 3 |
| CPNE5 | association | 0.530 | 1 |
| NIPBL | physical association | 0.490 | 2 |
| AIRE | physical association | 0.400 | 1 |
| CTCF | physical association | 0.400 | 1 |
| HAND2 | physical association | 0.400 | 1 |
| ARL5B | association | 0.350 | 2 |
| REC8 | association | 0.350 | 2 |
| BRCA2 | association | 0.350 | 1 |
| CITED1 | association | 0.350 | 1 |
| CPNE9 | association | 0.350 | 1 |
| GOLGA7 | association | 0.350 | 1 |
| HSD17B1 | association | 0.350 | 1 |
| KLHL20 | association | 0.350 | 1 |
| RABIF | association | 0.350 | 1 |
| SMC2 | association | 0.350 | 1 |
| FBXW7 | proximity | 0.270 | 4 |
| SMARCA4 | proximity | 0.270 | 4 |
| SPOP | proximity | 0.270 | 4 |
BioGRID (616 interactions; top human partners by supporting records in a sample of 600 records): SMC3 (Co-fractionation; 28 records), SMC1A (Co-fractionation; 24 records), STAG2 (Co-fractionation; 21 records), STAG1 (Co-fractionation; 18 records), WAPAL (Affinity Capture-MS; 13 records), CDCA5 (Affinity Capture-MS; 9 records), PDS5A (Affinity Capture-MS; 9 records), PDS5B (Affinity Capture-Western; 9 records), USP13 (Affinity Capture-MS; 5 records), CCAR2 (Affinity Capture-MS; 3 records), CDC34 (Affinity Capture-MS; 3 records), FHL3 (Two-hybrid; 3 records), HIST1H4A (Affinity Capture-MS; 3 records), MCM7 (Co-fractionation; 3 records), NSMCE2 (Biochemical Activity; 3 records)
SIGNOR signaling
showing 12 of 13 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRSS21 | up-regulates | RAD21 | cleavage |
| RAD21 | “down-regulates quantity by repression” | RUNX1 | “transcriptional regulation” |
| RAD21 | “down-regulates quantity” | APOB | “transcriptional regulation” |
| STAG2 | “up-regulates quantity by stabilization” | RAD21 | binding |
| RAD21 | “down-regulates activity” | GATA2 | relocalization |
| RAD21 | “down-regulates activity” | RUNX1 | relocalization |
| RAD21 | “down-regulates activity” | ERG | relocalization |
| PLK1 | “down-regulates quantity by destabilization” | RAD21 | dephosphorylation |
| ESPL1 | “down-regulates quantity by destabilization” | RAD21 | cleavage |
| RAD21 | “up-regulates activity” | DNA_repair | |
| RAD21 | “form complex” | “Cohesin complex” | binding |
| CC2D1A | “up-regulates activity” | RAD21 | binding |
Protein complexes (CORUM) (6)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
6 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| ★ SNF2h-cohesin-NuRD complex | 16 | MBD2, MTA2, RBBP7, SMARCA5, MTA1, RBBP4, HDAC2, RAD21, SMC3, STAG1, STAG2, BAZ1A, HDAC1, MBD3, SMC1A, CHD3 |
| Sororin-cohesin complex | 6 | SMC1A, SMC3, CDCA5, PDS5A, PDS5B, RAD21 |
| Cohesin-SA1 complex | 4 | SMC3, STAG1, RAD21, SMC1A |
| Cohesin-SA2 complex | 4 | SMC3, STAG2, RAD21, SMC1A |
| DDX11-RAD21-SMC1A-SMC3 complex | 4 | SMC1A, SMC3, DDX11, RAD21 |
| NIPBL-RAD21-SMC1A complex | 3 | NIPBL, RAD21, SMC1A |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 38 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Meiosis | 5 | 46.0× | 2e-06 |
| S Phase | 6 | 35.1× | 5e-07 |
| Reproduction | 5 | 30.7× | 1e-05 |
| Resolution of Sister Chromatid Cohesion | 10 | 27.9× | 1e-10 |
| Meiotic synapsis | 5 | 22.7× | 6e-05 |
| Mitotic Metaphase and Anaphase | 7 | 21.9× | 7e-07 |
| Mitotic Anaphase | 7 | 21.9× | 7e-07 |
| Separation of Sister Chromatids | 11 | 21.6× | 1e-10 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitotic sister chromatid cohesion | 6 | 177.4× | 3e-10 |
| sister chromatid cohesion | 6 | 121.0× | 1e-09 |
| cell division | 11 | 13.4× | 5e-08 |
| positive regulation of ERK1 and ERK2 cascade | 5 | 11.2× | 3e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 2 cancer types — AML, LUSC.
intOGen’s role is a computational inference from cohort mutation patterns and may diverge from the gene’s curated/literature role; read it alongside the evidence above.
Genetic variants
Variant evidence for RAD21: 555 ClinVar records (59 pathogenic / likely pathogenic); 2 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
555 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 40 |
| Likely pathogenic | 19 |
| Uncertain significance | 213 |
| Likely benign | 170 |
| Benign | 50 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 59 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 802434 | NM_006265.3(RAD21):c.144+1G>A | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 985588 | NM_006265.3(RAD21):c.1222G>T (p.Gly408Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 1805433 | NM_006265.3(RAD21):c.1635del (p.Gly547fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2631614 | NM_006265.3(RAD21):c.160C>T (p.Arg54Trp) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 998067 | NM_006265.3(RAD21):c.9C>A (p.Tyr3Ter) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 560415 | NM_006265.3(RAD21):c.1864G>A (p.Ala622Thr) | Pathogenic | criteria provided, single submitter | 2 |
| 864835 | NM_006265.3(RAD21):c.589C>T (p.Gln197Ter) | Pathogenic | criteria provided, single submitter | 2 |
| 864836 | NM_006265.3(RAD21):c.1217_1224del (p.Lys406fs) | Pathogenic | criteria provided, single submitter | 2 |
| 1185049 | NM_006265.3(RAD21):c.943_946del (p.Glu315fs) | Pathogenic | criteria provided, single submitter | 2 |
| 211993 | NM_006265.3(RAD21):c.56_62del (p.Leu19fs) | Pathogenic | criteria provided, single submitter | 1 |
| 211994 | NM_006265.3(RAD21):c.579dup (p.Glu194fs) | Pathogenic | criteria provided, single submitter | 1 |
| 211995 | NM_006265.3(RAD21):c.592_593dup (p.Ser198fs) | Pathogenic | criteria provided, single submitter | 1 |
| 280268 | NM_006265.3(RAD21):c.578T>A (p.Leu193Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 418706 | NM_006265.3(RAD21):c.1651del (p.Gln551fs) | Pathogenic | criteria provided, single submitter | 1 |
| 436481 | NM_006265.3(RAD21):c.181_182dup (p.Gly62fs) | Pathogenic | criteria provided, single submitter | 1 |
Per-variant reference — Sugi Variant
Explore RAD21’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 28 predictions of 1,123):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 8:116847692–116847693 | acceptor_loss | 1.0000 | 2 |
| 8:116850768–116850769 | acceptor_loss | 1.0000 | 5 |
| 8:116850769 | acceptor_gain | 1.0000 | |
| 8:116850776–116850777 | acceptor_gain | 1.0000 | 2 |
| 8:116851946–116851947 | donor_loss | 1.0000 | 5 |
| 8:116852097 | acceptor_loss | 1.0000 | |
| 8:116852101–116852103 | acceptor_gain | 1.0000 | 2 |
| 8:116852109–116852111 | acceptor_gain | 1.0000 | 3 |
| 8:116852511 | donor_gain | 1.0000 | |
| 8:116852709–116852710 | acceptor_loss | 1.0000 | 6 |
AlphaMissense
2,123 missense substitutions predicted likely pathogenic (of 4,235 scored), across 406 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M361 | 9 | 0.996 | 1.000 |
| M87 | 9 | 0.949 | 0.999 |
| M51 | 9 | 0.926 | 1.000 |
| H22 | 8 | 1.000 | 1.000 |
| H58 | 8 | 1.000 | 1.000 |
| D77 | 8 | 1.000 | 1.000 |
| D327 | 8 | 1.000 | 1.000 |
| F89 | 8 | 0.999 | 1.000 |
| F2 | 8 | 0.998 | 1.000 |
| D95 | 8 | 0.998 | 1.000 |
| D346 | 8 | 0.997 | 0.999 |
| D352 | 8 | 0.995 | 0.998 |
| F117 | 8 | 0.994 | 1.000 |
| F304 | 8 | 0.994 | 1.000 |
| H31 | 8 | 0.991 | 0.999 |
| F114 | 8 | 0.987 | 1.000 |
| D24 | 8 | 0.986 | 1.000 |
| D116 | 8 | 0.986 | 0.998 |
| F33 | 8 | 0.985 | 1.000 |
| F597 | 8 | 0.984 | 1.000 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
4 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 2.87e-05 |
| Kidney Chromophobe (TCGA) | unfavorable | 3.58e-05 |
| Liver Hepatocellular Carcinoma (validation) | unfavorable | 0.000622 |
| Lung Adenocarcinoma (TCGA) | unfavorable | 0.000923 |
Disease associations
OMIM: gene MIM:606462 | disease phenotypes: MIM:614701, MIM:122470, MIM:611376
GenCC curated gene-disease
3 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| Cornelia de Lange syndrome 4 | Definitive | Autosomal dominant | 4 |
| Cornelia de Lange syndrome | Definitive | Autosomal dominant | 2 |
| Mungan syndrome | Strong | Autosomal recessive | 2 |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| Cornelia de Lange syndrome | Definitive | AD |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (15 panels, 11 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
15 panels:
| Panel | Rating |
|---|---|
| Cerebral malformation | green |
| Clefting | green |
| DDG2P | green |
| Fetal anomalies | green |
| Haematological malignancies cancer susceptibility | green |
| Holoprosencephaly | green |
| Hypotonic infant | green |
| IUGR and IGF abnormalities | green |
| Intellectual disability | green |
| Leukodystrophy, childhood onset | green |
| Severe microcephaly | green |
| Paediatric disorders | amber |
| Paediatric pseudo-obstruction syndrome | amber |
| Radial dysplasia | amber |
| Skeletal dysplasia | amber |
Mondo (5): Cornelia de Lange syndrome 4 (MONDO:0013864), Cornelia de Lange syndrome (MONDO:0016033), Cornelia de Lange syndrome 1 (MONDO:0007387), Mungan syndrome (MONDO:0012657), acute megakaryoblastic leukemia in down syndrome (MONDO:0020526)
Orphanet (2): Cornelia de Lange syndrome (Orphanet:199), Acute megakaryoblastic leukemia in children with Down syndrome (Orphanet:99887)
HPO phenotypes
showing 60 of 160 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000010 | Recurrent urinary tract infections |
| HP:0000028 | Cryptorchidism |
| HP:0000047 | Hypospadias |
| HP:0000059 | Hypoplastic labia majora |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000083 | Renal insufficiency |
| HP:0000089 | Renal hypoplasia |
| HP:0000130 | Abnormality of the uterus |
| HP:0000164 | Abnormality of the dentition |
| HP:0000174 | Abnormal palate morphology |
| HP:0000175 | Cleft palate |
| HP:0000176 | Submucous cleft hard palate |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000220 | Velopharyngeal insufficiency |
| HP:0000233 | Thin vermilion border |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000381 | Stapes ankylosis |
| HP:0000400 | Macrotia |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000411 | Protruding ear |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000414 | Bulbous nose |
| HP:0000431 | Wide nasal bridge |
| HP:0000453 | Choanal atresia |
| HP:0000463 | Anteverted nares |
| HP:0000470 | Short neck |
| HP:0000482 | Microcornea |
| HP:0000486 | Strabismus |
| HP:0000498 | Blepharitis |
| HP:0000501 | Glaucoma |
| HP:0000508 | Ptosis |
| HP:0000518 | Cataract |
| HP:0000527 | Long eyelashes |
| HP:0000545 | Myopia |
| HP:0000574 | Thick eyebrow |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000601 | Hypotelorism |
| HP:0000639 | Nystagmus |
| HP:0000664 | Synophrys |
| HP:0000667 | Phthisis bulbi |
| HP:0000684 | Delayed eruption of teeth |
| HP:0000687 | Widely spaced teeth |
| HP:0000717 | Autism |
| HP:0000722 | Compulsive behaviors |
| HP:0000739 | Anxiety |
| HP:0000767 | Pectus excavatum |
| HP:0000768 | Pectus carinatum |
GWAS associations
2 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST005863_11 | Menopause (age at onset) | 2e-8 |
| GCST005863_29 | Menopause (age at onset) | 3e-7 |
EFO canonical traits (from GWAS)
1 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004704 | age at menopause |
MeSH disease descriptors
1 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| C548078 | Mungan Syndrome *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | increases abundance, increases expression, decreases expression | 3 |
| Particulate Matter | increases abundance, affects expression, decreases expression | 3 |
| bisphenol A | decreases expression, affects cotreatment, increases expression | 2 |
| trichostatin A | affects cotreatment, decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| echimidine | increases metabolic processing, decreases expression | 1 |
| TAK-243 | decreases sumoylation | 1 |
| pradimicin-IRD | decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| lasiocarpine | decreases expression, increases metabolic processing | 1 |
| triphenyl phosphate | affects expression | 1 |
| riddelliine | decreases expression, increases metabolic processing | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| afimoxifene | affects response to substance | 1 |
| sodium arsenite | decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | increases expression, affects cotreatment | 1 |
| coumarin | decreases phosphorylation | 1 |
| beta-methylcholine | affects expression | 1 |
| deguelin | increases expression | 1 |
| nickel acetate | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| torcetrapib | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
Cellosaurus cell lines
32 cell lines: 29 cancer cell line, 3 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0393 | LN-229 | Cancer cell line | Female |
| CVCL_0589 | Kasumi-1 | Cancer cell line | Male |
| CVCL_1632 | P31/FUJ | Cancer cell line | Male |
| CVCL_A5S0 | SEES3-1V human RAD21, clone1 | Embryonic stem cell | Male |
| CVCL_A5S1 | SEES3-1V human RAD21, clone2 | Embryonic stem cell | Male |
| CVCL_A5S2 | SEES3-1V human RAD21, clone3 | Embryonic stem cell | Male |
| CVCL_A602 | CMY | Cancer cell line | Male |
| CVCL_A8V5 | LN229/CD20 | Cancer cell line | Female |
| CVCL_D2R8 | LN229/mCCR3 | Cancer cell line | Female |
| CVCL_D2RM | LN229/mCD39 | Cancer cell line | Female |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 252 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | Phase 4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | Phase 4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | Phase 4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | Phase 4 | RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | Phase 3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT04381897 | Phase 2 | NOT_YET_RECRUITING | Use of N-Acetylcysteine in the Treatment of Repetitive and Self-Injurious Behaviors in Cornelia de Lange Syndrome |
| NCT02304302 | Phase 2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | Phase 2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | Phase 2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | Phase 2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT01773278 | Phase 2 | UNKNOWN | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT05273320 | Phase 1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | Phase 1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | Phase 1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | Phase 1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | Phase 1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT06789783 | Phase 2/3 | RECRUITING | Cornelia De Lange Syndrome: Assessing Positive Effects of Lithium Treatment |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT03113877 | Not specified | TERMINATED | Evaluation of Autonomic Function in Individuals With Cornelia de Lange Syndrome (CdLS) |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT05829668 | Not specified | RECRUITING | Behavioral Assessment and Treatment of Problem Behavior in Children With Cornelia de Lange Syndrome |
| NCT03479476 | Phase 2/3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | Phase 1/2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | Early Phase 1 | TERMINATED | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
| NCT02714868 | Not specified | COMPLETED | Evaluation of Project TEAM (Teens Making Environmental and Activity Modifications) |
| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
| NCT02746614 | Not specified | COMPLETED | Psychomotor Therapy Effects in Adaptive Behavior and Motor Proficiency in Intellectual Disability |
| NCT02836405 | Not specified | COMPLETED | TMS for the Investigation of Brain Plasticity in Autism Spectrum Disorders |
| NCT02862808 | Not specified | COMPLETED | Molecular Diagnosis of Syndromic or Isolated Severe Intellectual Disability Using Whole Exome Sequencing : a Pilot Study |
| NCT02881333 | Not specified | UNKNOWN | Various Type of Genetic Events in Patients With Intellectual Disability |
| NCT02889068 | Not specified | COMPLETED | Targeted Next Generation Sequencing and Intellectual Disability |
| NCT02914951 | Not specified | ENROLLING_BY_INVITATION | Cognitive-Behavioral Therapy for Irritability in Children With Autism Spectrum Disorder and Intellectual Disability |
| NCT02919826 | Not specified | COMPLETED | Dialectical Behaviour Group Therapy for Adults With Intellectual Disabilities |
| NCT02934854 | Not specified | WITHDRAWN | Biomarker for Creatine Deficiency Syndromes (BioCDS) |
| NCT03033797 | Not specified | UNKNOWN | Augmentative and Alternative Communication in Games With Virtual Reality in Intellectual Disabilities |
| NCT03135236 | Not specified | COMPLETED | Parents as the Primary Sexuality Educators for Their Young Adults With Down Syndrome |
| NCT03139760 | Not specified | COMPLETED | POWERSforID: A Telehealth Weight Management System for Adults With Intellectual Disability |
| NCT03203226 | Not specified | COMPLETED | The Feldenkrais Method for People With Intellectual Disability |
| NCT03212092 | Not specified | COMPLETED | Reducing Aggression Among People With an Intellectual Disability |
| NCT03218462 | Not specified | COMPLETED | Effect of Sensory Adapted Dental Environment on Dental Anxiety of Children With Intellectual and Developmental Disabilities |
| NCT03234231 | Not specified | UNKNOWN | Supervised Brushing Programme for Intellectual Disabled Students |
Related Atlas pages
- Associated diseases: Cornelia de Lange syndrome 4, Cornelia de Lange syndrome, Mungan syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute megakaryoblastic leukemia in down syndrome, Cornelia de Lange syndrome, Cornelia de Lange syndrome 1, Cornelia de Lange syndrome 4, Mungan syndrome