RAET1E-AS1

Summary

RAET1E-AS1 (RAET1E antisense RNA 1, HGNC:48994) is a long non-coding RNA gene on chromosome 6q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48994
Approved symbol	RAET1E-AS1
Name	RAET1E antisense RNA 1
Location	6q25.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RAET1G-AS1
Ensembl gene	ENSG00000223701
Ensembl biotype	lncRNA
Entrez	100652739
RNAcentral	URS000075DCB9 — lncRNA, 1209 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000446954, ENST00000605899

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446954 — 3 exons

Exon	Start	End
ENSE00001637832	149896133	149896239
ENSE00001682266	149919187	149919508
ENSE00001788922	149890103	149890164

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 77.72.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	77.72	gold quality
esophagus mucosa	UBERON:0002469	77.00	gold quality
colonic epithelium	UBERON:0000397	76.16	gold quality
lower esophagus mucosa	UBERON:0035834	75.68	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	71.99	gold quality
prefrontal cortex	UBERON:0000451	71.56	gold quality
vagina	UBERON:0000996	70.71	gold quality
primary visual cortex	UBERON:0002436	70.14	gold quality
ventricular zone	UBERON:0003053	69.41	gold quality
frontal cortex	UBERON:0001870	69.29	gold quality
cortical plate	UBERON:0005343	69.23	gold quality
ganglionic eminence	UBERON:0004023	68.81	gold quality
stromal cell of endometrium	CL:0002255	68.57	gold quality
amygdala	UBERON:0001876	68.21	gold quality
skeletal muscle tissue	UBERON:0001134	67.95	gold quality
esophagus	UBERON:0001043	67.57	gold quality
cerebral cortex	UBERON:0000956	67.46	gold quality
substantia nigra	UBERON:0002038	67.32	gold quality
sural nerve	UBERON:0015488	66.96	gold quality
right frontal lobe	UBERON:0002810	66.72	gold quality
hypothalamus	UBERON:0001898	66.63	gold quality
anterior cingulate cortex	UBERON:0009835	66.53	gold quality
skin of leg	UBERON:0001511	66.41	gold quality
Ammon’s horn	UBERON:0001954	66.27	gold quality
zone of skin	UBERON:0000014	66.19	gold quality
superior frontal gyrus	UBERON:0002661	66.16	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.98	gold quality
skin of abdomen	UBERON:0001416	65.57	gold quality
nucleus accumbens	UBERON:0001882	65.47	gold quality
brain	UBERON:0000955	65.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.68

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.