RAI1-AS1

Summary

RAI1-AS1 (RAI1 antisense RNA 1, HGNC:40496) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40496
Approved symbol	RAI1-AS1
Name	RAI1 antisense RNA 1
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237328
Ensembl biotype	lncRNA
Entrez	100861516
RNAcentral	URS000081211B — lncRNA, 718 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000443696, ENST00000798447, ENST00000798448

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000443696 — 3 exons

Exon	Start	End
ENSE00001796140	17759154	17759386
ENSE00001801576	17765818	17766302
ENSE00002340266	17770816	17770821

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 90.56.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.56	gold quality
colonic epithelium	UBERON:0000397	69.31	gold quality
gastrocnemius	UBERON:0001388	66.58	gold quality
muscle of leg	UBERON:0001383	66.50	gold quality
skeletal muscle tissue	UBERON:0001134	64.72	gold quality
bone marrow cell	CL:0002092	62.59	silver quality
uterine cervix	UBERON:0000002	62.00	gold quality
liver	UBERON:0002107	61.32	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.47	gold quality
adrenal tissue	UBERON:0018303	59.12	gold quality
tonsil	UBERON:0002372	58.33	silver quality
lymph node	UBERON:0000029	56.16	gold quality
blood	UBERON:0000178	54.51	silver quality
thoracic mammary gland	UBERON:0005200	54.34	silver quality
urinary bladder	UBERON:0001255	54.04	gold quality
sural nerve	UBERON:0015488	53.67	silver quality
monocyte	CL:0000576	53.45	silver quality
stromal cell of endometrium	CL:0002255	52.56	silver quality
myometrium	UBERON:0001296	51.72	gold quality
calcaneal tendon	UBERON:0003701	51.64	silver quality
corpus callosum	UBERON:0002336	51.51	gold quality
islet of Langerhans	UBERON:0000006	51.36	gold quality
kidney	UBERON:0002113	51.27	gold quality
lung	UBERON:0002048	49.28	gold quality
adult mammalian kidney	UBERON:0000082	49.14	gold quality
adrenal gland	UBERON:0002369	49.08	gold quality
pancreas	UBERON:0001264	48.54	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.49	gold quality
primary visual cortex	UBERON:0002436	47.87	silver quality
multicellular organism	UBERON:0000468	47.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.99

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.