RALGPS2-AS1

Summary

RALGPS2-AS1 (RALGPS2 antisense RNA 1, HGNC:55163) is a long non-coding RNA gene on chromosome 1q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55163
Approved symbol	RALGPS2-AS1
Name	RALGPS2 antisense RNA 1
Location	1q25.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	lnc-ANGPTL1-3
Ensembl gene	ENSG00000273062
Ensembl biotype	lncRNA
Entrez	646976
RNAcentral	URS00026A2414 — lncRNA, 3276 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000608517

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000608517 — 1 exons

Exon	Start	End
ENSE00003703266	178724306	178726285

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 84.16.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.16	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.91	gold quality
bone marrow cell	CL:0002092	69.18	silver quality
bone marrow	UBERON:0002371	67.09	gold quality
tonsil	UBERON:0002372	60.66	gold quality
liver	UBERON:0002107	59.97	gold quality
ganglionic eminence	UBERON:0004023	59.17	silver quality
testis	UBERON:0000473	57.59	gold quality
left testis	UBERON:0004533	57.54	gold quality
lymph node	UBERON:0000029	57.53	gold quality
right testis	UBERON:0004534	56.83	gold quality
right lobe of liver	UBERON:0001114	55.32	gold quality
cortical plate	UBERON:0005343	55.06	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	54.15	gold quality
blood	UBERON:0000178	53.80	silver quality
leukocyte	CL:0000738	53.53	gold quality
monocyte	CL:0000576	53.19	gold quality
spleen	UBERON:0002106	52.06	gold quality
duodenum	UBERON:0002114	50.46	gold quality
urinary bladder	UBERON:0001255	50.41	gold quality
left uterine tube	UBERON:0001303	50.39	gold quality
prefrontal cortex	UBERON:0000451	49.81	silver quality
small intestine	UBERON:0002108	49.56	gold quality
vermiform appendix	UBERON:0001154	49.55	gold quality
right uterine tube	UBERON:0001302	49.46	gold quality
kidney	UBERON:0002113	49.40	gold quality
left ovary	UBERON:0002119	49.31	gold quality
muscle tissue	UBERON:0002385	49.23	silver quality
fallopian tube	UBERON:0003889	49.07	gold quality
islet of Langerhans	UBERON:0000006	48.96	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	22.27
E-ANND-3	no	1.55

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.