RALY-AS1

Summary

RALY-AS1 (RALY antisense RNA 1, HGNC:50743) is a long non-coding RNA gene on chromosome 20q11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50743
Approved symbol	RALY-AS1
Name	RALY antisense RNA 1
Location	20q11.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285230
Ensembl biotype	lncRNA
Entrez	101926888
RNAcentral	URS000075DEF7 — lncRNA, 672 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000419662, ENST00000432859, ENST00000440595, ENST00000618285, ENST00000645622, ENST00000663279, ENST00000668968, ENST00000669769, ENST00000791888, ENST00000791889, ENST00000791890, ENST00000791891

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419662 — 2 exons

Exon	Start	End
ENSE00004173354	33992488	33992905
ENSE00004173359	33994205	33994413

Expression profiles

Bgee: expression breadth ubiquitous, 165 present calls, max score 82.24.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.5968 / max 211.2762, expressed in 1628 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186977	2.5562	1306
186978	1.3980	878
186979	0.6426	239

Top tissues by expression

252 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	82.24	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.00	silver quality
left testis	UBERON:0004533	80.00	gold quality
right testis	UBERON:0004534	79.20	gold quality
testis	UBERON:0000473	77.86	gold quality
bone marrow cell	CL:0002092	77.65	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.25	gold quality
mucosa of transverse colon	UBERON:0004991	75.72	gold quality
rectum	UBERON:0001052	74.23	gold quality
right uterine tube	UBERON:0001302	73.49	gold quality
colonic epithelium	UBERON:0000397	73.42	gold quality
sural nerve	UBERON:0015488	72.28	gold quality
body of pancreas	UBERON:0001150	71.99	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	71.79	gold quality
right lobe of thyroid gland	UBERON:0001119	71.29	gold quality
monocyte	CL:0000576	71.24	gold quality
leukocyte	CL:0000738	70.87	gold quality
left lobe of thyroid gland	UBERON:0001120	70.69	gold quality
right lobe of liver	UBERON:0001114	70.39	gold quality
pancreas	UBERON:0001264	70.38	gold quality
right adrenal gland	UBERON:0001233	70.17	gold quality
islet of Langerhans	UBERON:0000006	70.04	gold quality
thyroid gland	UBERON:0002046	69.96	gold quality
right adrenal gland cortex	UBERON:0035827	69.89	gold quality
body of stomach	UBERON:0001161	69.76	gold quality
left adrenal gland	UBERON:0001234	69.34	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	69.24	gold quality
spinal cord	UBERON:0002240	68.97	gold quality
left adrenal gland cortex	UBERON:0035825	68.94	gold quality
granulocyte	CL:0000094	68.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.