RAMP1

gene
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Summary

RAMP1 (receptor activity modifying protein 1, HGNC:9843) is a protein-coding gene on chromosome 2q37.3, encoding Receptor activity-modifying protein 1 (O60894). Accessory protein that interacts with and modulates the function of G-protein coupled receptors including calcitonin gene-related peptide type 1 receptor (CALCRL) and calcitonin receptor (CALCR).

The protein encoded by this gene is a member of the RAMP family of single-transmembrane-domain proteins, called receptor (calcitonin) activity modifying proteins (RAMPs). RAMPs are type I transmembrane proteins with an extracellular N terminus and a cytoplasmic C terminus. RAMPs are required to transport calcitonin-receptor-like receptor (CRLR) to the plasma membrane. CRLR, a receptor with seven transmembrane domains, can function as either a calcitonin-gene-related peptide (CGRP) receptor or an adrenomedullin receptor, depending on which members of the RAMP family are expressed. In the presence of this (RAMP1) protein, CRLR functions as a CGRP receptor. The RAMP1 protein is involved in the terminal glycosylation, maturation, and presentation of the CGRP receptor to the cell surface. Alternative splicing results in multiple transcript variants encoding different isoforms.

Source: NCBI Gene 10267 — RefSeq curated summary.

At a glance

  • GWAS associations: 2
  • Clinical variants (ClinVar): 40 total
  • Druggable target: yes — 10 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_005855

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:9843
Approved symbolRAMP1
Namereceptor activity modifying protein 1
Location2q37.3
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000132329
Ensembl biotypeprotein_coding
OMIM605153
Entrez10267

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 protein_coding

ENST00000254661, ENST00000403885, ENST00000404910, ENST00000409726, ENST00000884470, ENST00000884471, ENST00000951440

RefSeq mRNA: 2 — MANE Select: NM_005855 NM_001308353, NM_005855

CCDS: CCDS2522, CCDS77546

Canonical transcript exons

ENST00000254661 — 3 exons

ExonStartEnd
ENSE00001073872237859623237859727
ENSE00001073873237911528237912106
ENSE00003594791237877224237877362

Expression profiles

Bgee: expression breadth ubiquitous, 269 present calls, max score 99.55.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.6863 / max 363.6931, expressed in 929 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter IDTPM avgSamples expressed
263068.5133885
263030.6372186
263050.3102130
263040.101938
263020.076120
263010.047621

Top tissues by expression

290 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
body of uterusUBERON:000985399.55gold quality
ascending aortaUBERON:000149699.31gold quality
thoracic aortaUBERON:000151599.30gold quality
endocervixUBERON:000045899.18gold quality
descending thoracic aortaUBERON:000234599.18gold quality
right coronary arteryUBERON:000162599.12gold quality
aortaUBERON:000094798.83gold quality
left uterine tubeUBERON:000130398.80gold quality
apex of heartUBERON:000209898.63gold quality
popliteal arteryUBERON:000225098.55gold quality
tibial arteryUBERON:000761098.55gold quality
lower esophagus muscularis layerUBERON:003583398.46gold quality
mucosa of stomachUBERON:000119998.44gold quality
lower esophagusUBERON:001347398.34gold quality
myometriumUBERON:000129698.31gold quality
esophagogastric junction muscularis propriaUBERON:003584198.19gold quality
muscle layer of sigmoid colonUBERON:003580598.18gold quality
body of pancreasUBERON:000115098.16gold quality
right atrium auricular regionUBERON:000663198.12gold quality
heart left ventricleUBERON:000208497.88gold quality
cardiac ventricleUBERON:000208297.67gold quality
nucleus accumbensUBERON:000188297.56gold quality
hindlimb stylopod muscleUBERON:000425297.49gold quality
left coronary arteryUBERON:000162697.38gold quality
cardiac atriumUBERON:000208197.22gold quality
amygdalaUBERON:000187697.17gold quality
coronary arteryUBERON:000162197.05gold quality
gastrocnemiusUBERON:000138896.97gold quality
right frontal lobeUBERON:000281096.92gold quality
caudate nucleusUBERON:000187396.87gold quality

Single-cell (SCXA)

Detected in 16 experiment(s), a significant marker in 16.

ExperimentMarker?Max mean expression
E-MTAB-10287yes2092.41
E-MTAB-6701yes1335.61
E-HCAD-24yes1059.36
E-HCAD-36yes993.18
E-MTAB-9906yes561.89
E-GEOD-125970yes296.81
E-CURD-84yes236.19
E-HCAD-1yes31.99
E-HCAD-6yes30.32
E-MTAB-6678yes29.91
E-MTAB-8142yes27.98
E-MTAB-5061yes18.83
E-HCAD-25yes17.29
E-CURD-112yes5.25
E-HCAD-10yes4.10

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): NKX3-1

miRNA regulators (miRDB)

15 targeting RAMP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-471999.7372.103329
HSA-MIR-6832-3P99.5270.441726
HSA-MIR-520A-5P99.3566.721632
HSA-MIR-525-5P99.3566.851615
HSA-MIR-450599.2767.812678
HSA-MIR-578799.2267.862628
HSA-MIR-328-5P99.0864.651000
HSA-MIR-6885-5P98.7164.33902
HSA-MIR-6881-5P98.1667.38665
HSA-MIR-6870-3P98.0865.10692
HSA-MIR-6842-3P98.0766.331325
HSA-MIR-365297.7165.431890
HSA-MIR-443097.4765.611813
HSA-MIR-4474-3P96.9765.87870
HSA-MIR-6890-5P92.8965.83442

Literature-anchored findings (GeneRIF, showing 40)

  • Receptor activity modifying proteins interaction with human and porcine calcitonin receptor-like receptor (CRLR) in HEK-293 cells (PMID:11693189)
  • Co-expression of RAMP1 and CRLR reconstituted a CGRP receptor that was able to activate the pheromone-signaling pathway with pharmacological properties similar to those observed previously in mammalian cells. (PMID:11733510)
  • Receptor activity-modifying protein 1 determines the species selectivity of non-peptide CGRP receptor antagonists. (PMID:11847213)
  • The CGRP receptor components, RAMP1 and CRLR, are down-regulated during myeloid differentiation of CD34+ cells, and CGRP receptor selectively promotes the development of CFU-GM. (PMID:11937264)
  • results show the presence of calcitonin receptor-like receptor and receptor activity-modifying proteins in middle meningeal, middle cerebral, pial, and superficial temporal vessels (PMID:11973435)
  • Co-expression of calcitonin receptors (CT) lacking a portion of domain 1 with receptor activity-modifying protein (RAMP) 1, 2, or 3 appears to produce functional CT-(8-32)-sensitive adrenomedullin receptors. (PMID:12565884)
  • The extracellular domain of receptor activity-modifying protein 1 is sufficient for calcitonin receptor-like receptor function (PMID:12574158)
  • identification of domains responsible for agonist binding specificity (PMID:12684503)
  • TNF-alpha induced time- and dose-dependent decreases in the expression of RAMP1 mRNA in cultured human coronary artery smooth muscle cells, thereby diminishing AM-evoked cAMP production (PMID:15245870)
  • Data found that expressions of RAMP1, RAMP2 and RAMP3 mRNAs increased with the worsening of heart function, but the expressions of RAMP1 and RAMP2 mRNA decreased at level IV of heart failure. (PMID:15300632)
  • calcitonin receptor-like receptor heterodimer with RAMP1 yields a calcitonin gene-related peptide receptor (PMID:15613468)
  • This study reveals important functionality of the RAMP C-terminal domain and identifies key differences in the role of the RAMP C terminus for calcitonin receptor versus calcitonin receptor-like receptor-based receptors. (PMID:16912219)
  • CLR and RAMP1 traffic from endosomes to lysosomes by ubiquitin-independent mechanisms, where they are degraded at different rates (PMID:17310067)
  • RAMP1 interacts with tubulin. (PMID:17493758)
  • Functional calcitonin gene-related peptide receptors are formed by the asymmetric assembly of a calcitonin receptor-like receptor and RAMP1. (PMID:17785463)
  • We did not observe any difference in mRNA for CL-R and RAMPs in arteries from patients with hemorrhagic stroke, arteriosclerosis and acute myocardial infarction when compared to patients without these diagnoses (PMID:18198792)
  • RAMP1 may be strongly considered as a candidate gene for migraine. (PMID:18240900)
  • Identification of RAMP1 residues important for calcitonin gene-related peptide are reported. (PMID:18593822)
  • the crystal structure of the extracellular domain of human RAMP1 at 2.4 A resolution was determined. (PMID:18725456)
  • The T-A-C haplotype is a genetic marker for cerebral infarction, and RAMP1 is associated with increased susceptibility to cerebral infarction. (PMID:19710695)
  • RAMP1 overexpression attenuates Ang-II-induced hypertension and induces a protective change in cardiovascular autonomic regulation (PMID:20100989)
  • These data for the first time pinpoint a specific RAMP1 residue important for both antagonist and agonist potency and are consistent with the N-terminal domain of RAMP1 forming the binding pocket interface with calcitonin receptor-like receptor. (PMID:20188075)
  • lower expression in bronchial biopsies from subjects with asthma (PMID:20933260)
  • The present finding demonstrated that RAMP1 immunoreactivity was localized in many neurons and phenopalatine ganglion. (PMID:22208649)
  • CLR and RAMP1 co-localize in the enteric nervous system of human stomach, ileum, and colon, and are in close proximity to their ligands CGRP and IMD (PMID:22484227)
  • RAMP1 overexpression enhances the promoting effect that exogenous CGRP has on osteogenic differentiation (PMID:22949393)
  • No significant association of the tested SNPs of the RAMP1 gene were found with migraine susceptibility. (PMID:23237777)
  • multiple NKX3.1 binding sites were found in the RAMP1 locus in human prostate cancer cells and in the normal mouse prostate. (PMID:23867798)
  • A novel functional role for RAMP1 in regulation of CaSR signalling in addition to its known role in receptor trafficking, is reported. (PMID:24454825)
  • RAMP1 rs7590387 has a role in the transformation of episodic migraine into medication overuse headache. (PMID:25881990)
  • Data suggest that ligand binding of a G protein-coupled receptor (GPCR) may inform drug development targeting calcitonin receptor-like receptor (CLR):receptor activity-modifying proteins RAMP1/2 complexes. (PMID:25982113)
  • Evidence that DNA methylation at RAMP1 gene promoter plays a role in migraine was described. (PMID:26501962)
  • T-A-T RAMP1 gene haplotype might have utility as a genetic marker for Essential Hypertension and that the RAMP1 gene may be associated with increased susceptibility to Essential Hypertension in a Japanese population. (PMID:28181496)
  • Data suggest CGRP receptor (CGRPR) ECL2 (extracellular loop 2 domain) enables interaction with N-terminal residues of CGRP; this provides evidence for dual involvement of ECL2 in two-domain binding model of CGRP/CGRPR interaction; CGRPR is obligate heterodimer of CLR/RAMP1. (CGRP = calcitonin gene-related peptide; CLR = calcitonin receptor-like receptor; RAMP1 = receptor [calcitonin] activity modifying protein 1) (PMID:28691801)
  • in nestin/hRAMP1 transgenic mice, hypertension caused by Ang II or phenylephrine was greatly attenuated, and associated autonomic dysregulation and increased sympathetic vasomotor tone were diminished or abolished. (PMID:29297736)
  • structure of the human CGRP receptor in complex with CGRP and the Gs-protein heterotrimer at 3.3 A global resolution, determined by Volta phase-plate cryo-electron microscopy (PMID:30209400)
  • Based on the finding that an acylated chimeric ADM/ADM2 analog potently stimulates CLR/RAMP1 and 2 signaling, we hypothesized that the binding domain of this analog could have potent inhibitory activity on CLR/RAMP receptors. (PMID:31150417)
  • Structure and dynamics of the CGRP receptor in apo and peptide-bound forms. (PMID:33602864)
  • Peptide ligand interaction with maltose-binding protein tagged to the calcitonin gene-related peptide receptor: The inhibitory role of receptor N-glycosylation. (PMID:35007660)
  • Involvement of RAMP1/p38MAPK signaling pathway in osteoblast differentiation in response to mechanical stimulation: a preliminary study. (PMID:38825686)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerioramp1ENSDARG00000056704
mus_musculusRamp1ENSMUSG00000034353
rattus_norvegicusENSRNOG00000089232

Paralogs (2): RAMP3 (ENSG00000122679), RAMP2 (ENSG00000131477)

Protein

Protein identifiers

Receptor activity-modifying protein 1O60894 (reviewed: O60894)

Alternative names: Calcitonin-receptor-like receptor activity-modifying protein 1

All UniProt accessions (2): O60894, E9PC20

UniProt curated annotations — full annotation on UniProt →

Function. Accessory protein that interacts with and modulates the function of G-protein coupled receptors including calcitonin gene-related peptide type 1 receptor (CALCRL) and calcitonin receptor (CALCR). Required for the transport of CALCRL to the plasma membrane. Together with CALCRL, form the receptor complex for the calcitonin gene-related peptides CGRP1/CALCA and CGRP2/CALCB. Together with CALCR, form the AMYR1 receptor complex for amylin/IAPP and CGRP1/CALCA.

Subunit / interactions. Heterodimer of CALCRL and RAMP1; the interaction induces allosteric modulation of CALCRL function and CGRP1/CALCA and CGRP2/CALCB ligand specificity. Heterodimer of CALCR and RAMP1; interaction forms the AMYR1 receptor complex for amylin/IAPP and CGRP1/CALCA ligands.

Subcellular location. Cell membrane.

Tissue specificity. Expressed in many tissues including the uterus, bladder, brain, pancreas and gastro-intestinal tract.

Similarity. Belongs to the RAMP family.

RefSeq proteins (2): NP_001295282, NP_005846* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR006985RAMPFamily
IPR038126RAMP_sfHomologous_superfamily

Pfam: PF04901

UniProt features (19 total): helix 7, strand 3, disulfide bond 3, topological domain 2, signal peptide 1, chain 1, turn 1, transmembrane region 1

Structure

Experimental structures (PDB)

26 structures.

PDBMethodResolution (Å)
6ZHOX-RAY DIFFRACTION1.6
8AX7X-RAY DIFFRACTION1.65
6ZISX-RAY DIFFRACTION1.73
7P0FX-RAY DIFFRACTION1.85
8AX6X-RAY DIFFRACTION1.9
6D1UX-RAY DIFFRACTION2.05
3N7SX-RAY DIFFRACTION2.1
7TYFELECTRON MICROSCOPY2.2
9BP3ELECTRON MICROSCOPY2.2
7P0IX-RAY DIFFRACTION2.3
2YX8X-RAY DIFFRACTION2.4
9AUCELECTRON MICROSCOPY2.4
4RWGX-RAY DIFFRACTION2.44
6UMGX-RAY DIFFRACTION2.7
8AX5X-RAY DIFFRACTION2.75
3N7PX-RAY DIFFRACTION2.8
5V6YX-RAY DIFFRACTION2.8
3N7RX-RAY DIFFRACTION2.9
7TYWELECTRON MICROSCOPY3
9UWQELECTRON MICROSCOPY3.1
7KNTELECTRON MICROSCOPY3.15
9BLWELECTRON MICROSCOPY3.2
9MM5ELECTRON MICROSCOPY3.26
6E3YELECTRON MICROSCOPY3.3
7KNUELECTRON MICROSCOPY3.49
9MNIELECTRON MICROSCOPY4.06

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O60894-F189.950.75

Antibody-complex structures (SAbDab): 66E3Y, 6UMG, 7TYF, 7TYW, 9AUC, 9BLW

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Disulfide bonds (3): 27–82, 40–72, 57–104

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-418555G alpha (s) signalling events
R-HSA-419812Calcitonin-like ligand receptors

MSigDB gene sets: 362 (showing top): GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, VERHAAK_AML_WITH_NPM1_MUTATED_DN, BENPORATH_ES_WITH_H3K27ME3, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOCC_CELL_SURFACE, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_MONOATOMIC_CATION_TRANSPORT, PATIL_LIVER_CANCER, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_GLYCOPROTEIN_METABOLIC_PROCESS

GO Biological Process (15): angiogenesis (GO:0001525), calcium ion transport (GO:0006816), intracellular protein transport (GO:0006886), G protein-coupled receptor signaling pathway (GO:0007186), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), regulation of G protein-coupled receptor signaling pathway (GO:0008277), positive regulation of glycoprotein biosynthetic process (GO:0010560), protein transport (GO:0015031), receptor internalization (GO:0031623), cellular response to hormone stimulus (GO:0032870), protein localization to plasma membrane (GO:0072659), amylin receptor signaling pathway (GO:0097647), amylin receptor 1 signaling pathway (GO:0150059), calcitonin gene-related peptide receptor signaling pathway (GO:1990408), obsolete positive regulation of protein glycosylation (GO:0060050)

GO Molecular Function (5): calcitonin gene-related peptide receptor activity (GO:0001635), coreceptor activity (GO:0015026), amylin receptor activity (GO:0097643), calcitonin gene-related peptide binding (GO:1990407), protein binding (GO:0005515)

GO Cellular Component (5): plasma membrane (GO:0005886), cell surface (GO:0009986), signaling receptor complex (GO:0043235), CGRP receptor complex (GO:1990406), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-2 pathways:

CategoryPathways
GPCR downstream signalling1
Class B/2 (Secretin family receptors)1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
intracellular protein localization2
calcitonin family receptor signaling pathway2
calcitonin family receptor activity2
cellular anatomical structure2
blood vessel morphogenesis1
anatomical structure formation involved in morphogenesis1
metal ion transport1
protein transport1
intracellular transport1
G protein-coupled receptor activity1
signal transduction1
adenylate cyclase-modulating G protein-coupled receptor signaling pathway1
adenylate cyclase activator activity1
G protein-coupled receptor signaling pathway1
regulation of signal transduction1
glycoprotein biosynthetic process1
positive regulation of macromolecule biosynthetic process1
regulation of glycoprotein biosynthetic process1
positive regulation of glycoprotein metabolic process1
transport1
establishment of protein localization1
receptor-mediated endocytosis1
response to hormone1
cellular response to chemical stimulus1
cellular response to endogenous stimulus1
protein localization to membrane1
protein localization to cell periphery1
amylin receptor signaling pathway1
signaling receptor activity1
calcitonin family binding1
binding1
membrane1
cell periphery1
protein-containing complex1
calcitonin family receptor complex1

Protein interactions and networks

STRING

622 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
RAMP1CALCRP30988999
RAMP1CALCRLQ16602999
RAMP1CRCPO75575981
RAMP1IAPPP10997980
RAMP1ADMP35318976
RAMP1CALCBP10092965
RAMP1CALCAP01258929
RAMP1ADM2Q7Z4H4922
RAMP1VIPR1P32241766
RAMP1VIPR2P41587748
RAMP1TAC1P20366700
RAMP1CASRP41180696
RAMP1RAMP2O60895653
RAMP1RAMP3O60896651
RAMP1TACR1P25103618

IntAct

396 interactions, top by confidence:

ABTypeScore
CALCRLRAMP1psi-mi:“MI:0407”(direct interaction)0.810
RAMP1CALCRLpsi-mi:“MI:0407”(direct interaction)0.810
RAMP1CALCRLpsi-mi:“MI:0915”(physical association)0.810
CALCARAMP1psi-mi:“MI:0915”(physical association)0.610
NKG7RAMP1psi-mi:“MI:0915”(physical association)0.560
MALRAMP1psi-mi:“MI:0915”(physical association)0.560
MS4A13RAMP1psi-mi:“MI:0915”(physical association)0.560
RAMP1NKG7psi-mi:“MI:0915”(physical association)0.560
RAMP1MALpsi-mi:“MI:0915”(physical association)0.560
RAMP1MS4A13psi-mi:“MI:0915”(physical association)0.560
ACKR3RAMP1psi-mi:“MI:0915”(physical association)0.400
ADGRE5RAMP1psi-mi:“MI:0915”(physical association)0.400
ADGRG3RAMP1psi-mi:“MI:0915”(physical association)0.400
ADGRG5RAMP1psi-mi:“MI:0915”(physical association)0.400
ADORA1RAMP1psi-mi:“MI:0915”(physical association)0.400
RAMP1ADORA2Apsi-mi:“MI:0915”(physical association)0.400
ADORA2BRAMP1psi-mi:“MI:0915”(physical association)0.400
ADRB1RAMP1psi-mi:“MI:0915”(physical association)0.400
ADRB2RAMP1psi-mi:“MI:0915”(physical association)0.400
AVPR1ARAMP1psi-mi:“MI:0915”(physical association)0.400
AVPR1BRAMP1psi-mi:“MI:0915”(physical association)0.400
BDKRB1RAMP1psi-mi:“MI:0915”(physical association)0.400
BDKRB2RAMP1psi-mi:“MI:0915”(physical association)0.400

BioGRID (46): RAMP1 (Synthetic Growth Defect), RAMP1 (Synthetic Growth Defect), CALCRL (Affinity Capture-Luminescence), CALCRL (Reconstituted Complex), RAMP1 (Affinity Capture-RNA), RAMP1 (Reconstituted Complex), RAMP1 (Reconstituted Complex), RAMP1 (Reconstituted Complex), RAMP1 (Reconstituted Complex), RAMP1 (Affinity Capture-Western), RAMP1 (Two-hybrid), MAL (Two-hybrid), MS4A13 (Two-hybrid), RAMP1 (Reconstituted Complex), RAMP1 (Co-localization)

ESM2 similar proteins: A7MBM2, E9PY61, O00391, O08542, O60894, O60895, O76095, O77049, O88824, P52798, Q15904, Q16586, Q5Q0T9, Q5RJL6, Q641Q3, Q6IUU3, Q6P5F7, Q6PRD1, Q6UWJ8, Q6ZVN8, Q6ZVW7, Q7TQ32, Q80YF6, Q864V4, Q867C0, Q86WC4, Q8BGT0, Q8BH06, Q8BND5, Q8C1Q4, Q8K4C2, Q8N271, Q8N7M5, Q8NAC3, Q8R4C4, Q8R4C5, Q8R4C6, Q8VE43, Q91ZV8, Q96F46

Diamond homologs: O60894, O60896, Q7YS88, Q867C0, Q8R4C4, Q8R4C6, Q9JJ73, Q9JJ74, Q9WTJ5, Q9WUP1, Q8R4C5, Q9JHJ1, Q9WUP0, O60895

SIGNOR signaling

1 interactions.

AEffectBMechanism
RAMP1“form complex”“Amylin receptor 1 complex”binding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 165 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Amine ligand-binding receptors2050.1×1e-29
Class A/1 (Rhodopsin-like receptors)5831.2×6e-73
GPCR ligand binding5525.6×2e-63
Peptide ligand-binding receptors4423.6×2e-48
G alpha (q) signalling events5020.8×4e-52
G alpha (s) signalling events3217.0×1e-29
GPCR downstream signalling5316.7×2e-50
Chemokine receptors bind chemokines1216.3×1e-10

GO biological processes:

GO termPartnersFoldFDR
activation of adenylate cyclase activity855.1×3e-11
complement receptor mediated signaling pathway748.2×2e-09
G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger2242.1×1e-28
adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway3040.3×7e-39
dendritic cell chemotaxis636.5×4e-07
phospholipase C-activating G protein-coupled receptor signaling pathway4334.7×3e-53
vasoconstriction632.6×7e-07
positive regulation of cytosolic calcium ion concentration4532.3×4e-54

Disease & clinical

Clinical variants and AI predictions

ClinVar

40 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance27
Likely benign6
Benign2

Top pathogenic / likely-pathogenic (0)

SpliceAI

898 predictions. Top by Δscore:

VariantEffectΔscore
2:237859725:TGGG:Tdonor_loss1.0000
2:237859726:GG:Gdonor_gain1.0000
2:237859726:GGGT:Gdonor_loss1.0000
2:237859727:GG:Gdonor_gain1.0000
2:237859728:G:GAdonor_loss1.0000
2:237859728:G:GGdonor_gain1.0000
2:237859729:T:Gdonor_loss1.0000
2:237859732:G:GGdonor_gain1.0000
2:237859723:CCTGG:Cdonor_gain0.9900
2:237859725:TGG:Tdonor_gain0.9900
2:237859726:GGG:Gdonor_gain0.9900
2:237877222:A:AGacceptor_gain0.9900
2:237877223:G:GGacceptor_gain0.9900
2:237877359:TCAGG:Tdonor_loss0.9900
2:237877363:G:Tdonor_loss0.9900
2:237877364:T:Adonor_loss0.9900
2:237911523:CGCA:Cacceptor_loss0.9900
2:237911524:GCA:Gacceptor_loss0.9900
2:237911525:CA:Cacceptor_loss0.9900
2:237911526:A:AGacceptor_gain0.9900
2:237911526:AG:Aacceptor_gain0.9900
2:237911527:G:GGacceptor_gain0.9900
2:237911527:G:GTacceptor_loss0.9900
2:237911527:GG:Gacceptor_gain0.9900
2:237911527:GGA:Gacceptor_gain0.9900
2:237859724:CTGG:Cdonor_gain0.9800
2:237859730:GA:Gdonor_gain0.9800
2:237877223:GCCC:Gacceptor_gain0.9800
2:237911525:CAGG:Cacceptor_gain0.9800
2:237911526:AGGA:Aacceptor_gain0.9800

AlphaMissense

958 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
2:237877302:T:GF44C0.984
2:237877301:T:CF44L0.983
2:237877303:C:AF44L0.983
2:237877303:C:GF44L0.983
2:237877348:G:CW59C0.980
2:237877348:G:TW59C0.980
2:237911637:T:CF101L0.980
2:237911638:T:GF101C0.980
2:237911639:C:AF101L0.980
2:237911639:C:GF101L0.980
2:237911588:G:CW84C0.970
2:237911588:G:TW84C0.970
2:237911638:T:CF101S0.962
2:237877302:T:CF44S0.958
2:237877340:T:AC57S0.957
2:237877341:G:CC57S0.957
2:237911637:T:AF101I0.950
2:237911647:G:AC104Y0.939
2:237877339:G:CW56C0.933
2:237877339:G:TW56C0.933
2:237911583:T:CF83L0.932
2:237911585:C:AF83L0.932
2:237911585:C:GF83L0.932
2:237911614:T:GF93C0.930
2:237911637:T:GF101V0.930
2:237911613:T:CF93L0.926
2:237911615:C:AF93L0.926
2:237911615:C:GF93L0.926
2:237877341:G:AC57Y0.925
2:237911552:C:GC72W0.924

dbSNP variants (sampled 300 via entrez): RS1000069537 (2:237860308 A>G), RS1000092442 (2:237865938 G>A), RS1000126621 (2:237903059 A>C), RS1000155108 (2:237876597 G>A), RS1000213712 (2:237884991 C>T), RS1000270684 (2:237879250 G>A), RS1000300869 (2:237895615 G>A), RS1000321310 (2:237881750 G>A,C), RS1000322604 (2:237879455 G>T), RS1000346965 (2:237871280 G>A,T), RS1000415620 (2:237912388 C>T), RS1000471340 (2:237897732 C>G,T), RS1000488882 (2:237893478 T>C), RS1000495195 (2:237885718 C>G,T), RS1000565652 (2:237884844 G>C)

Disease associations

OMIM: gene MIM:605153 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

2 associations (top):

StudyTraitp-value
GCST001762_366Obesity-related traits8.000000e-06
GCST004523_9Resting metabolic rate8.000000e-06

EFO canonical traits (2, from GWAS)

EFO IDTrait name
EFO:0006336diastolic blood pressure
EFO:0008004resting metabolic rate measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2107838 (PROTEIN COMPLEX), CHEMBL2111189 (PROTEIN COMPLEX)

Molecules with ChEMBL bioactivity

10 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 3,069 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL2103758PRAMLINTIDE4883
CHEMBL2364638UBROGEPANT4428
CHEMBL3989767CALCITONIN SALMON4666
CHEMBL3991065ATOGEPANT4251
CHEMBL236593TELCAGEPANT3254
CHEMBL4802169CAGRILINTIDE3
CHEMBL1910936MK32072163
CHEMBL207197OLCEGEPANT2347
CHEMBL3334624BI-44370262
CHEMBL4635331HTL-0022562115

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

3 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs6431564RAMP10.000
rs13386048RAMP10.000
rs12465864RAMP10.000

Binding affinities (BindingDB)

14 measured of 14 human assays (14 total across all organisms); most potent 14 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamideKI0.02 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-1-[[(2S)-3-[1-[2-(dimethylamino)ethyl]piperidin-4-yl]-1-oxo-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]-3-(7-methyl-2,3,3a,4,5,6,7,7a-octahydro-1H-indazol-5-yl)-1-oxopropan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamideKI0.025 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(7-methyl-2,3,3a,4,5,6,7,7a-octahydro-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-2-oxospiro[1H-pyrido[2,3-d][1,3]oxazine-4,4’-piperidine]-1’-carboxamideKI0.032 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-(1-propylpiperidin-4-yl)-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxoquinolin-3-ylidene)piperidine-1-carboxamideKI0.04 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-1-[[(2S)-3-(1-ethylpiperidin-4-yl)-1-oxo-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]-3-(7-methyl-1H-indazol-5-yl)-1-oxopropan-2-yl]-4-(2-oxoquinolin-3-ylidene)piperidine-1-carboxamideKI0.04 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamideKI0.04 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxoquinolin-3-ylidene)piperidine-1-carboxamideKI0.063 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-1,4-dihydroquinazolin-3-yl)piperidine-1-carboxamideKI0.063 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxoquinolin-3-ylidene)piperidine-1-carboxamideKI0.079 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-1,4-dihydroquinazolin-3-yl)piperidine-1-carboxamideKI0.079 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-2-oxospiro[1H-pyrido[2,3-d][1,3]oxazine-4,4’-piperidine]-1’-carboxamideKI0.079 nMUS-10300056: CGRP receptor antagonists
tert-butyl 4-[(2S)-2-[[(2R)-3-(7-methyl-1H-indazol-5-yl)-2-[[4-(2-oxoquinolin-3-ylidene)piperidine-1-carbonyl]amino]propanoyl]amino]-3-oxo-3-(4-pyridin-4-ylpiperazin-1-yl)propyl]piperidine-1-carboxylateKI0.1 nMUS-10300056: CGRP receptor antagonists
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-(1-pentanoylpiperidin-4-yl)-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxoquinolin-3-ylidene)piperidine-1-carboxamideKI0.1 nMUS-10300056: CGRP receptor antagonists
3-[4-[(2S)-2-[[(2R)-3-(7-methyl-2,3,3a,4,5,6,7,7a-octahydro-1H-indazol-5-yl)-2-[[4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carbonyl]amino]propanoyl]amino]-3-oxo-3-(4-pyridin-4-ylpiperazin-1-yl)propyl]piperidin-1-yl]-3-oxopropanoateKI0.1 nMUS-10300056: CGRP receptor antagonists

ChEMBL bioactivities

234 potent at pChembl≥5 of 237 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
11.00IC500.01nMCHEMBL4643006
10.96Ki0.011nMCHEMBL3893283
10.85Ki0.014nMCHEMBL2035984
10.82Ki0.015nMCHEMBL3981883
10.82Ki0.015nMATOGEPANT
10.80Ki0.016nMCHEMBL2035985
10.77Ki0.017nMCHEMBL3914484
10.73EC500.01862nMCAGRILINTIDE
10.70Ki0.02nMCHEMBL264010
10.70Ki0.02nMCHEMBL2371890
10.70Ki0.01995nMCHEMBL4638112
10.70Ki0.02nMCHEMBL4638635
10.70Ki0.02nMCHEMBL4638112
10.66Ki0.022nMMK3207
10.66EC500.02188nMPRAMLINTIDE
10.60Ki0.02512nMCHEMBL4638938
10.60Ki0.025nMCHEMBL5813875
10.55Ki0.028nMCHEMBL2035982
10.52IC500.03nMOLCEGEPANT
10.50Ki0.03162nMOLCEGEPANT
10.50Ki0.03162nMHTL-0022562
10.49Ki0.032nMHTL-0022562
10.40Ki0.04nMCHEMBL2035981
10.40Ki0.04nMCHEMBL3099918
10.40Ki0.03981nMCHEMBL4635521
10.40Ki0.04nMHTL-0022562
10.40Ki0.04nMCHEMBL5997296
10.40Ki0.04nMCHEMBL5747971
10.40Ki0.04nMCHEMBL4635521
10.35IC500.045nMCHEMBL4647045
10.33Ki0.047nMCHEMBL2035983
10.30Ki0.05nMCHEMBL3099931
10.30Ki0.05nMCHEMBL3099925
10.26Ki0.055nMCHEMBL3968568
10.24EC500.05754nMCHEMBL5567377
10.20Ki0.0631nMCHEMBL4640887
10.20Ki0.063nMCHEMBL5907647
10.20Ki0.063nMCHEMBL4640887
10.18Ki0.066nMCHEMBL3890519
10.17Ki0.067nMCHEMBL3944519
10.17Ki0.067nMUBROGEPANT
10.10Ki0.08nMCHEMBL3099920
10.10Ki0.07943nMCHEMBL4642755
10.10Ki0.07943nMCHEMBL4649523
10.10Ki0.079nMCHEMBL4642755
10.10Ki0.079nMCHEMBL4649523
10.10Ki0.079nMCHEMBL5916604
10.05Ki0.09nMCHEMBL3099916
10.03Ki0.093nMCHEMBL3971313
10.00IC500.1nMOLCEGEPANT

PubChem BioAssay actives

141 with measured affinity, of 168 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(3S)-3-[[(2S,3R)-2-[[(3S)-2-[(2S)-2-[[(2S)-2-amino-3-phenylpropanoyl]amino]-3-methylbutanoyl]-3,4-dihydro-1H-isoquinoline-3-carbonyl]amino]-3-hydroxybutanoyl]amino]-4-[[(2S)-1-[[2-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-1-oxopropan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]carbamoyl]pyrrolidin-1-yl]-2-oxoethyl]amino]-3-methyl-1-oxobutan-2-yl]amino]-4-oxobutanoic acid257877: Displacement of [3H-propionyl-K24] from halphaCGRP expressed in human neuroblastoma SK-N-MC cellski<0.0001uM
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki<0.0001uM
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-2-oxospiro[1H-pyrido[2,3-d][1,3]oxazine-4,4’-piperidine]-1’-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki<0.0001uM
N-[(2R)-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki<0.0001uM
N-[(2S,5R,8R)-5-(2-cyanopropan-2-yl)-8-(4-fluoro-2-methylphenyl)-3-oxo-2,5,6,7-tetrahydro-1H-pyrrolizin-2-yl]-3-fluoro-5-methyl-4-[(3-methyl-6-oxo-1H-pyridazin-5-yl)oxy]benzamide1657084: Inhibition of human CLR/RAMP1ki<0.0001uM
N-[2-[(2S,5R)-2-(2-cyanopropan-2-yl)-5-(3-methylphenyl)pyrrolidin-1-yl]-2-oxoethyl]-3-methyl-4-[(3-methyl-6-oxo-1H-pyridazin-5-yl)methyl]benzamide1657084: Inhibition of human CLR/RAMP1ki<0.0001uM
N-[(2R)-1-[[(2S)-6-amino-1-oxo-1-(4-pyridin-4-ylpiperazin-1-yl)hexan-2-yl]amino]-3-(7-methyl-1H-indazol-5-yl)-1-oxopropan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki<0.0001uM
4-[1-[5-[(2,6-dimethyl-4-pyridinyl)-methylamino]-4-[2-(2-methoxypropan-2-yl)-4-pyridinyl]-2-pyridinyl]piperidin-4-yl]-3,5-dihydro-1H-1,4-benzodiazepin-2-one1657093: Inhibition of human CLR/RAMP1 by cAMP assayic50<0.0001uM
N-[(2-cyclobutyl-6-methyl-4-pyridinyl)methyl]-5-[(1R)-1-[(3R)-3-methyl-2-oxo-1H-pyrrolo[2,3-b]pyridin-3-yl]ethyl]pyridine-2-carboxamide1657084: Inhibition of human CLR/RAMP1ki<0.0001uM
(4S)-4-[[(2S)-5-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[[2-[[(2S)-2-[[(2S)-2-[[(4R,7S,10S,13S,16S,19S,22R)-22-amino-16-(2-amino-2-oxoethyl)-7-[(1R)-1-hydroxyethyl]-10,19-bis(hydroxymethyl)-13-(2-methylpropyl)-6,9,12,15,18,21-hexaoxo-1,2-dithia-5,8,11,14,17,20-hexazacyclotricosane-4-carbonyl]amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]acetyl]amino]hexanoyl]amino]-4-methylpentanoyl]amino]-3-hydroxypropanoyl]amino]-5-oxopentanoyl]amino]-5-[[(2S)-1-[[(2S)-1-[[(2S)-6-amino-1-[[(2S)-1-[[(2S)-5-amino-1-[[(2S,3R)-1-[[(2S)-1-[(2S)-2-[[(2S)-1-[[(2S,3R)-1-[[(2S)-4-amino-1-[[(2S,3R)-1-[[2-[[(2S)-1-[[2-[[(2S,3R)-1-[(2S)-2-carbamoylpyrrolidin-1-yl]-3-hydroxy-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-2-oxoethyl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-1,4-dioxobutan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxohexan-2-yl]amino]-3-(1H-imidazol-4-yl)-1-oxopropan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-5-oxopentanoic acid2085717: Agonist activity at human AMY1R complex of CTR/RAMP1 transduced in human HeLa cells by cAMP assayec50<0.0001uM
2-[(8R)-8-(3,5-difluorophenyl)-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(2R)-2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski<0.0001uM
(3S)-3-[[(2S,3R)-2-[[(2S)-1-[(2S)-2-[[(2S)-2-amino-3-phenylpropanoyl]amino]-3-methylbutanoyl]pyrrolidine-2-carbonyl]amino]-3-hydroxybutanoyl]amino]-4-[[(2S)-1-[[2-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-1-oxopropan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]carbamoyl]pyrrolidin-1-yl]-2-oxoethyl]amino]-3-methyl-1-oxobutan-2-yl]amino]-4-oxobutanoic acid257877: Displacement of [3H-propionyl-K24] from halphaCGRP expressed in human neuroblastoma SK-N-MC cellski<0.0001uM
(3S)-3-[[(2S,3R)-2-[[2-[[(2S)-2-[[(2S)-2-amino-3-phenylpropanoyl]amino]-3-methylbutanoyl]amino]-2-methylpropanoyl]amino]-3-hydroxybutanoyl]amino]-4-[[(2S)-1-[[2-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-1-oxopropan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]carbamoyl]pyrrolidin-1-yl]-2-oxoethyl]amino]-3-methyl-1-oxobutan-2-yl]amino]-4-oxobutanoic acid257877: Displacement of [3H-propionyl-K24] from halphaCGRP expressed in human neuroblastoma SK-N-MC cellski<0.0001uM
2-[(8R)-8-(3,5-difluorophenyl)-8-methyl-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski<0.0001uM
2-[(8R)-8-(3,5-difluorophenyl)-8-methyl-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(2R)-2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski<0.0001uM
N-[(2R)-1-[[(2S)-6-amino-1-oxo-1-(4-pyridin-4-ylpiperazin-1-yl)hexan-2-yl]amino]-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxopropan-2-yl]-4-(2-oxo-1,4-dihydroquinazolin-3-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki<0.0001uM
2-[(8R)-8-(4-chloro-3,5-difluorophenyl)-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski<0.0001uM
2-[(8R)-8-(4-chloro-3,5-difluorophenyl)-8-methyl-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski<0.0001uM
Pramlintide2085717: Agonist activity at human AMY1R complex of CTR/RAMP1 transduced in human HeLa cells by cAMP assayec50<0.0001uM
2-[(8R)-8-(3,5-difluorophenyl)-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski<0.0001uM
Atogepant1657091: Antagonist activity at human CLR/RAMP1ki<0.0001uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-2,2-dimethyl-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski<0.0001uM
(3S)-3-[[(2S,3R)-2-[[(2S,4R)-1-[(2S)-2-[[(2S)-2-amino-3-phenylpropanoyl]amino]-3-methylbutanoyl]-4-hydroxypyrrolidine-2-carbonyl]amino]-3-hydroxybutanoyl]amino]-4-[[(2S)-1-[[2-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-1-oxopropan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]carbamoyl]pyrrolidin-1-yl]-2-oxoethyl]amino]-3-methyl-1-oxobutan-2-yl]amino]-4-oxobutanoic acid257877: Displacement of [3H-propionyl-K24] from halphaCGRP expressed in human neuroblastoma SK-N-MC cellski<0.0001uM
N-[(3S,4R)-3-fluoro-1-(oxan-4-yl)piperidin-4-yl]-4-[[(4S)-4-methyl-2-oxopyrrolidin-1-yl]methyl]-3-[4-(6-propan-2-ylpyridazin-3-yl)phenoxy]benzamide1657093: Inhibition of human CLR/RAMP1 by cAMP assayic50<0.0001uM
(2S)-2-[[4-amino-3-chloro-5-(trifluoromethyl)phenyl]methyl]-1-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]-4-[4-(2-oxo-4,5-dihydro-1H-1,3-benzodiazepin-3-yl)piperidin-1-yl]butane-1,4-dione1657084: Inhibition of human CLR/RAMP1ic500.0001uM
N-[(2-cyclobutyl-6-methyl-4-pyridinyl)methyl]-4-[(1R)-1-[(3S)-3-methyl-2,5-dioxopyrrolidin-3-yl]ethyl]benzamide1657084: Inhibition of human CLR/RAMP1ki0.0001uM
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-1,4-dihydroquinazolin-3-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki0.0001uM
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-1H-quinolin-3-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki0.0001uM
N-[(2R)-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxo-1-[[(2S)-1-oxo-3-piperidin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-1,4-dihydroquinazolin-3-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki0.0001uM
2-[(2S,6R)-2-(3-chlorophenyl)-6-fluoro-4-oxo-1,8-dioxa-3-azaspiro[4.5]decan-3-yl]-N-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[c]pyridine]-3’-yl]acetamide1657084: Inhibition of human CLR/RAMP1ki0.0001uM
N-[(2R)-3-(7-methyl-1H-indazol-5-yl)-1-oxo-1-[[(2S)-1-oxo-3-pyridin-4-yl-1-(4-pyridin-4-ylpiperazin-1-yl)propan-2-yl]amino]propan-2-yl]-4-(2-oxo-3H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamide1652728: Displacement of [3H]telcagepant from recombinant human CLR/RAMP1 expressed in Sf21 insect cell membranes measured after 60 mins by microbeta scintillation counting methodki0.0001uM
(3S)-4-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-[[(2S)-4-amino-1-[[(2S)-1-[[2-[[(2S)-1-[[(2S,3S)-1-[(2S)-2-[[(2S)-1-[[(2S)-1-[[(2S,3R)-1-[[(2S)-4-amino-1-[[(2S)-1-[[2-[[(2S)-1-[[(2S)-1-[[(2S,3R)-1-[[(2S)-1-amino-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-2-oxoethyl]amino]-3-methyl-1-oxobutan-2-yl]amino]-1,4-dioxobutan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-2-oxoethyl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-1,4-dioxobutan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-hydroxy-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-3-(1H-imidazol-4-yl)-1-oxopropan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-5-amino-2-[[(2S,3R)-2-[[(2S)-2-[[(4R,7S,10S,13S,16S,19R)-16-(2-amino-2-oxoethyl)-19-[[(2S)-2,6-diaminohexanoyl]amino]-7,13-bis[(1R)-1-hydroxyethyl]-10-methyl-6,9,12,15,18-pentaoxo-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carbonyl]amino]propanoyl]amino]-3-hydroxybutanoyl]amino]-5-oxopentanoyl]amino]-5-carbamimidamidopentanoyl]amino]-4-methylpentanoyl]amino]propanoyl]amino]-4-oxobutanoic acid2085717: Agonist activity at human AMY1R complex of CTR/RAMP1 transduced in human HeLa cells by cAMP assayec500.0001uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]-1-(trifluoromethyl)cyclopropane-1-carboxamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
N-[(1R)-1-(3-fluoro-4-methylphenyl)ethyl]-2,2-dimethyl-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
Ubrogepant1657091: Antagonist activity at human CLR/RAMP1ki0.0001uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-N-[(E)-3-[(2R)-2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl]prop-2-enyl]oxane-4-carboxamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
N-[(1R)-2,3-dihydro-1H-inden-1-yl]-2,2-dimethyl-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
N-[(1R)-2,3-dihydro-1H-inden-1-yl]-2,2-dimethyl-N-[3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-ynyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
2,2-dimethyl-N-[3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-ynyl]-N-[(1R)-1-phenylethyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-3-methyl-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]thiophene-2-carboxamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0001uM
N-[(1R)-2,3-dihydro-1H-inden-1-yl]-2,2-dimethyl-N-[(E)-3-[(2R)-2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl]prop-2-enyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0002uM
2,2-dimethyl-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]-N-[(1R)-1-phenylethyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0002uM
N-[(1R)-2,3-dihydro-1H-inden-1-yl]-2,2-dimethyl-N-[3-[(2R)-2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl]prop-2-ynyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0002uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-2,2-dimethyl-N-[3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]propyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0002uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-2,2-dimethyl-N-[(E)-3-[(2R)-2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl]prop-2-enyl]propanamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0002uM
N-[(1R)-1-(3,5-difluorophenyl)ethyl]-1-methyl-N-[(E)-3-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]prop-2-enyl]imidazole-2-carboxamide1061708: Displacement of [125I]-hCGRP from human CALCRL/RAMP1 expressed in HEK293 cell membraneski0.0002uM
N-[(2R)-1-[[(2S)-6-amino-1-oxo-1-(4-pyridin-4-ylpiperazin-1-yl)hexan-2-yl]amino]-3-(3,5-dibromo-4-hydroxyphenyl)-1-oxopropan-2-yl]-4-(2-oxo-3H-benzimidazol-1-yl)piperidine-1-carboxamide1657084: Inhibition of human CLR/RAMP1ic500.0002uM
(1S,10R,20E)-12-methyl-10-[(7-methyl-1H-indazol-5-yl)methyl]-15,18-dioxa-5,9,12,24,26-pentazapentacyclo[20.5.2.11,4.13,7.025,28]hentriaconta-3,5,7(30),20,22(29),23,25(28)-heptaene-8,11,27-trione1657084: Inhibition of human CLR/RAMP1ki0.0003uM
[(2R)-3-(4-hydroxy-3,5-dimethylphenyl)-1-(4-morpholin-4-ylpiperidin-1-yl)-1-oxopropan-2-yl] 4-(2-oxo-4,5-dihydro-1H-1,3-benzodiazepin-3-yl)piperidine-1-carboxylate1657084: Inhibition of human CLR/RAMP1ic500.0003uM
2-[(8R)-8-(3,5-difluorophenyl)-8-ethyl-10-oxo-6,9-diazaspiro[4.5]decan-9-yl]-N-[(3S)-2-oxospiro[1H-pyrrolo[2,3-b]pyridine-3,6’-5,7-dihydrocyclopenta[b]pyridine]-3’-yl]acetamide665599: Displacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrski0.0003uM

CTD chemical–gene interactions

56 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Adecreases expression, decreases methylation, affects cotreatment4
Benzo(a)pyrenedecreases methylation, increases expression2
Cyclophosphamideincreases expression, affects cotreatment, affects response to substance2
Dexamethasoneincreases expression, affects cotreatment, decreases expression2
Doxorubicinincreases expression, affects cotreatment, affects response to substance2
Fluorouracilaffects cotreatment, affects response to substance, decreases expression2
Tetrachlorodibenzodioxinincreases expression2
Valproic Acidaffects cotreatment, increases expression, decreases expression2
pirinixic acidaffects binding, decreases expression, increases activity1
deoxynivalenoldecreases expression1
terbufosincreases methylation1
trimellitic anhydridedecreases expression1
sodium arsenitedecreases expression1
benzo(e)pyreneincreases methylation1
aflatoxin B2increases methylation1
nickel sulfateincreases expression1
1-nitropyrenedecreases expression1
CGP 52608affects binding, increases reaction1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideincreases expression, affects cotreatment1
dorsomorphinaffects cotreatment, increases expression1
bisphenol Saffects cotreatment, decreases expression1
NSC 689534affects binding, decreases expression1
MT19c compounddecreases expression1
Temozolomideincreases expression1
Sunitinibdecreases expression1
Air Pollutantsdecreases expression, increases abundance1
Arsenicaffects methylation1
Atrazinedecreases expression1
Cadmiumincreases expression1
Calcitriolincreases expression, affects cotreatment1

ChEMBL screening assays

43 unique, capped per target: 32 binding, 11 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL2040005BindingDisplacement of [125I]CGRP from human recombinant CALCRL/RAMP1 receptor expressed in HEK293 cells after 3 hrsMK-8825: a potent and selective CGRP receptor antagonist with good oral activity in rats. — Bioorg Med Chem Lett
CHEMBL4612975FunctionalAntagonist activity at human CGRP receptor in human SK-N-MC cells assessed as inhibition of CGRP-induced cAMP production preincubated for 30 mins followed by CGRP addition and measured after 30 mins by HTRF assayStructure-Based Drug Discovery of N-((R)-3-(7-Methyl-1H-indazol-5-yl)-1-oxo-1-(((S)-1-oxo-3-(piperidin-4-yl)-1-(4-(pyridin-4-yl)piperazin-1-yl)propan-2-yl)amino)propan-2-yl)-2’-oxo-1’,2’-dihydrospiro[piperidine-4,4’-pyrido[2,3-d][1,3]oxazine]-1-carboxamide (HTL22562): A Calcitonin Gene-Related Peptide Receptor Antagonist for Acute Treatment of Migraine. — J Med Chem

Cellosaurus cell lines

11 cell lines: 5 spontaneously immortalized cell line, 4 transformed cell line, 2 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_E4J2Genomeditech HEK-293 H_CALCRL+RAMP1 ReporterTransformed cell lineFemale
CVCL_H398CHO-K1/AMY1/CRE-LucSpontaneously immortalized cell lineFemale
CVCL_H399CHO-K1/AMY1/Galpha15Spontaneously immortalized cell lineFemale
CVCL_KA08CHO-K1/Galpha15/AMY1Spontaneously immortalized cell lineFemale
CVCL_KU85cAMP Hunter CHO-K1 CALCRL-RAMP1 GsSpontaneously immortalized cell lineFemale
CVCL_KW48PathHunter CHO-K1 CALCR-RAMP1 beta-arrestinSpontaneously immortalized cell lineFemale
CVCL_TI43HAP1 RAMP1 (-) 1Cancer cell lineMale
CVCL_TI44HAP1 RAMP1 (-) 2Cancer cell lineMale
CVCL_ZK45GeneBLAzer CALCRL:RAMP1-CRE-bla FreeStyle 293FTransformed cell lineFemale
CVCL_ZK46GeneBLAzer CALCRL:RAMP2-CRE-bla FreeStyle 293FTransformed cell lineFemale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.