RANBP3-DT

Summary

RANBP3-DT (RANBP3 divergent transcript, HGNC:55312) is a long non-coding RNA gene on chromosome 19p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55312
Approved symbol	RANBP3-DT
Name	RANBP3 divergent transcript
Location	19p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266983
Ensembl biotype	lncRNA
Entrez	100128568
RNAcentral	URS00000FBDF8 — lncRNA, 639 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000587836, ENST00000685063, ENST00000692109, ENST00000836840, ENST00000836841, ENST00000836842, ENST00000836843, ENST00000836844, ENST00000836845, ENST00000836846, ENST00000836847, ENST00000836848, ENST00000836849, ENST00000836850, ENST00000836851, ENST00000836852, ENST00000836853

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587836 — 4 exons

Exon	Start	End
ENSE00002944838	6019836	6019943
ENSE00002954424	6012120	6012224
ENSE00002956101	6020050	6020363
ENSE00002957065	5978403	5978514

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 84.60.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.1522 / max 32.9622, expressed in 1091 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
173442	2.1522	1091

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.60	gold quality
bone marrow cell	CL:0002092	70.80	silver quality
right uterine tube	UBERON:0001302	68.73	gold quality
ventricular zone	UBERON:0003053	66.56	gold quality
ganglionic eminence	UBERON:0004023	66.19	gold quality
sural nerve	UBERON:0015488	66.06	silver quality
bone marrow	UBERON:0002371	64.03	gold quality
ascending aorta	UBERON:0001496	62.33	gold quality
thoracic aorta	UBERON:0001515	62.29	gold quality
monocyte	CL:0000576	62.10	gold quality
descending thoracic aorta	UBERON:0002345	62.06	gold quality
skeletal muscle tissue	UBERON:0001134	61.89	gold quality
leukocyte	CL:0000738	61.79	gold quality
blood	UBERON:0000178	61.44	gold quality
left uterine tube	UBERON:0001303	61.07	gold quality
lower esophagus	UBERON:0013473	61.01	gold quality
lower esophagus muscularis layer	UBERON:0035833	61.01	gold quality
lymph node	UBERON:0000029	60.68	gold quality
mucosa of stomach	UBERON:0001199	60.58	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	60.58	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.41	gold quality
fallopian tube	UBERON:0003889	60.31	gold quality
colonic epithelium	UBERON:0000397	60.24	silver quality
smooth muscle tissue	UBERON:0001135	60.20	gold quality
liver	UBERON:0002107	60.11	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	59.86	gold quality
right frontal lobe	UBERON:0002810	59.71	gold quality
duodenum	UBERON:0002114	59.47	gold quality
endometrium	UBERON:0001295	59.36	gold quality
muscle layer of sigmoid colon	UBERON:0035805	58.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.83

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.