RAP2C-AS1

Summary

RAP2C-AS1 (RAP2C antisense RNA 1, HGNC:40957) is a long non-coding RNA gene on chromosome Xq26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40957
Approved symbol	RAP2C-AS1
Name	RAP2C antisense RNA 1
Location	Xq26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232160
Ensembl biotype	lncRNA
Entrez	101928578
RNAcentral	URS000075C71E — lncRNA, 3422 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000421483, ENST00000441399, ENST00000656464, ENST00000669125, ENST00000803261, ENST00000803262, ENST00000803263, ENST00000803264

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421483 — 3 exons

Exon	Start	End
ENSE00001660319	132239620	132239711
ENSE00001739377	132429813	132430162
ENSE00001774651	132217147	132217209

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 77.00.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.3677 / max 34.9405, expressed in 1478 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
197579	3.3677	1478

Top tissues by expression

251 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.00	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.64	gold quality
body of uterus	UBERON:0009853	75.48	gold quality
smooth muscle tissue	UBERON:0001135	73.01	gold quality
islet of Langerhans	UBERON:0000006	72.15	gold quality
sural nerve	UBERON:0015488	72.13	gold quality
colonic epithelium	UBERON:0000397	71.57	gold quality
calcaneal tendon	UBERON:0003701	71.06	gold quality
cortical plate	UBERON:0005343	70.92	gold quality
stromal cell of endometrium	CL:0002255	70.37	gold quality
ventricular zone	UBERON:0003053	69.97	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.87	gold quality
muscle of leg	UBERON:0001383	68.84	gold quality
mucosa of stomach	UBERON:0001199	68.30	gold quality
bone marrow cell	CL:0002092	68.01	silver quality
gastrocnemius	UBERON:0001388	67.96	gold quality
tibial artery	UBERON:0007610	67.63	gold quality
popliteal artery	UBERON:0002250	67.60	gold quality
pancreas	UBERON:0001264	67.07	gold quality
ganglionic eminence	UBERON:0004023	66.85	gold quality
gall bladder	UBERON:0002110	66.49	gold quality
buccal mucosa cell	CL:0002336	66.20	gold quality
tibial nerve	UBERON:0001323	66.16	gold quality
aorta	UBERON:0000947	65.85	gold quality
right atrium auricular region	UBERON:0006631	65.56	gold quality
monocyte	CL:0000576	65.11	gold quality
lower esophagus muscularis layer	UBERON:0035833	65.06	gold quality
right coronary artery	UBERON:0001625	65.01	gold quality
descending thoracic aorta	UBERON:0002345	65.00	gold quality
lower esophagus	UBERON:0013473	64.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.