RAPGEFL1
gene geneOn this page
Also known as Link-GEFII
Summary
RAPGEFL1 (Rap guanine nucleotide exchange factor like 1, HGNC:17428) is a protein-coding gene on chromosome 17q21.1, encoding Rap guanine nucleotide exchange factor-like 1 (Q9UHV5). Probable guanine nucleotide exchange factor (GEF).
Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in Ras protein signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Source: NCBI Gene 51195 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 61 total
- MANE Select transcript:
NM_016339
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17428 |
| Approved symbol | RAPGEFL1 |
| Name | Rap guanine nucleotide exchange factor like 1 |
| Location | 17q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Link-GEFII |
| Ensembl gene | ENSG00000108352 |
| Ensembl biotype | protein_coding |
| Entrez | 51195 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 8 protein_coding, 3 retained_intron
ENST00000264644, ENST00000456989, ENST00000469209, ENST00000496032, ENST00000538884, ENST00000538981, ENST00000541245, ENST00000543876, ENST00000544503, ENST00000545893, ENST00000620260
RefSeq mRNA: 3 — MANE Select: NM_016339
NM_001303533, NM_001303534, NM_016339
CCDS: CCDS11363, CCDS77022, CCDS77023
Canonical transcript exons
ENST00000620260 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003460448 | 40191582 | 40191672 |
| ENSE00003484278 | 40190434 | 40190531 |
| ENSE00003492420 | 40184214 | 40184349 |
| ENSE00003496506 | 40189208 | 40189375 |
| ENSE00003502801 | 40192926 | 40192990 |
| ENSE00003531857 | 40191316 | 40191494 |
| ENSE00003534737 | 40181616 | 40181694 |
| ENSE00003594024 | 40193363 | 40193417 |
| ENSE00003602587 | 40192606 | 40192693 |
| ENSE00003602915 | 40192213 | 40192263 |
| ENSE00003641961 | 40184581 | 40184678 |
| ENSE00003656787 | 40188866 | 40188978 |
| ENSE00003681424 | 40190640 | 40190762 |
| ENSE00003724554 | 40177470 | 40178381 |
| ENSE00003753411 | 40193664 | 40195650 |
Expression profiles
Bgee: expression breadth ubiquitous, 223 present calls, max score 99.20.
FANTOM5 (CAGE): breadth broad, TPM avg 2.1867 / max 84.9471, expressed in 551 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 160694 | 1.9628 | 527 |
| 160695 | 0.1419 | 80 |
| 160696 | 0.0820 | 42 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.20 | gold quality |
| skin of abdomen | UBERON:0001416 | 98.80 | gold quality |
| skin of leg | UBERON:0001511 | 98.77 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.81 | gold quality |
| zone of skin | UBERON:0000014 | 97.50 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 97.49 | gold quality |
| upper arm skin | UBERON:0004263 | 97.00 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.00 | gold quality |
| vagina | UBERON:0000996 | 94.82 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 94.65 | gold quality |
| nipple | UBERON:0002030 | 94.47 | gold quality |
| rectum | UBERON:0001052 | 94.35 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 94.18 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 93.91 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 93.82 | gold quality |
| cingulate cortex | UBERON:0003027 | 93.71 | gold quality |
| penis | UBERON:0000989 | 93.59 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 93.33 | gold quality |
| upper leg skin | UBERON:0004262 | 93.27 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.24 | gold quality |
| cerebellar cortex | UBERON:0002129 | 93.20 | gold quality |
| nucleus accumbens | UBERON:0001882 | 93.16 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.97 | gold quality |
| transverse colon | UBERON:0001157 | 92.85 | gold quality |
| mammalian vulva | UBERON:0000997 | 92.74 | gold quality |
| prefrontal cortex | UBERON:0000451 | 92.35 | gold quality |
| frontal cortex | UBERON:0001870 | 92.10 | gold quality |
| neocortex | UBERON:0001950 | 91.79 | gold quality |
| cerebellum | UBERON:0002037 | 91.56 | gold quality |
| amygdala | UBERON:0001876 | 91.48 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 63.59 |
| E-ANND-3 | yes | 9.26 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): GLI2
miRNA regulators (miRDB)
116 targeting RAPGEFL1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rapgefl1 | ENSDARG00000079912 |
| mus_musculus | Rapgefl1 | ENSMUSG00000038020 |
| rattus_norvegicus | Rapgefl1 | ENSRNOG00000027871 |
Paralogs (24): RASGRF1 (ENSG00000058335), RASGRP2 (ENSG00000068831), RAPGEF3 (ENSG00000079337), RAPGEF4 (ENSG00000091428), SOS2 (ENSG00000100485), RAPGEF1 (ENSG00000107263), RAPGEF2 (ENSG00000109756), RASGRF2 (ENSG00000113319), SOS1 (ENSG00000115904), RALGPS2 (ENSG00000116191), RAPGEF5 (ENSG00000136237), RALGPS1 (ENSG00000136828), RASGEF1B (ENSG00000138670), RGL1 (ENSG00000143344), RASGEF1C (ENSG00000146090), RASGRP3 (ENSG00000152689), RAPGEF6 (ENSG00000158987), RGL4 (ENSG00000159496), RALGDS (ENSG00000160271), RASGRP4 (ENSG00000171777), RASGRP1 (ENSG00000172575), RASGEF1A (ENSG00000198915), RGL3 (ENSG00000205517), RGL2 (ENSG00000237441)
Protein
Protein identifiers
Rap guanine nucleotide exchange factor-like 1 — Q9UHV5 (reviewed: Q9UHV5)
Alternative names: Link guanine nucleotide exchange factor II
All UniProt accessions (7): Q9UHV5, A0A087WVW6, F5GXC6, F5GY17, F5GYJ3, F5H2D5, F5H582
UniProt curated annotations — full annotation on UniProt →
Function. Probable guanine nucleotide exchange factor (GEF).
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UHV5-1 | 1 | yes |
| Q9UHV5-2 | 2 | |
| Q9UHV5-3 | 3 |
RefSeq proteins (3): NP_001290462, NP_001290463, NP_057423* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001895 | RASGEF_cat_dom | Domain |
| IPR008937 | Ras-like_GEF | Family |
| IPR023578 | Ras_GEF_dom_sf | Homologous_superfamily |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR036964 | RASGEF_cat_dom_sf | Homologous_superfamily |
Pfam: PF00617
UniProt features (20 total): strand 6, compositionally biased region 4, splice variant 3, helix 2, chain 1, domain 1, sequence conflict 1, turn 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2DHZ | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UHV5-F1 | 77.54 | 0.55 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 168 (showing top):
TGGTGCT_MIR29A_MIR29B_MIR29C, JAEGER_METASTASIS_DN, LHX3_01, CHX10_01, GGGTGGRR_PAX4_03, CATRRAGC_UNKNOWN, EGR1_01, GATA4_Q3, CCCNNGGGAR_OLF1_01, GOBP_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, AP2_Q6_01, ATF_01, TTTGCAC_MIR19A_MIR19B, EVI1_04, TAATTA_CHX10_01
GO Biological Process (5): G protein-coupled receptor signaling pathway (GO:0007186), Ras protein signal transduction (GO:0007265), nervous system development (GO:0007399), signal transduction (GO:0007165), small GTPase-mediated signal transduction (GO:0007264)
GO Molecular Function (1): guanyl-nucleotide exchange factor activity (GO:0005085)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| G protein-coupled receptor activity | 1 |
| signal transduction | 1 |
| small GTPase-mediated signal transduction | 1 |
| system development | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| intracellular signaling cassette | 1 |
| GTP binding | 1 |
| GDP binding | 1 |
| GTPase regulator activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
486 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RAPGEFL1 | OGFOD3 | Q6PK18 | 560 |
| RAPGEFL1 | SERAC1 | Q96JX3 | 472 |
| RAPGEFL1 | LIN52 | Q52LA3 | 446 |
| RAPGEFL1 | AMZ1 | Q400G9 | 445 |
| RAPGEFL1 | GPRIN1 | Q7Z2K8 | 426 |
| RAPGEFL1 | SIRAL2 | Q9NWS6 | 424 |
| RAPGEFL1 | RNFT2 | Q96EX2 | 421 |
| RAPGEFL1 | MAP6D1 | Q9H9H5 | 417 |
| RAPGEFL1 | LAPTM4A | Q15012 | 402 |
| RAPGEFL1 | PLCE1 | Q9P212 | 401 |
| RAPGEFL1 | RAPGEF5 | Q92565 | 382 |
| RAPGEFL1 | ATP8B2 | P98198 | 367 |
| RAPGEFL1 | ARHGEF4 | Q9NR80 | 366 |
| RAPGEFL1 | WIPF2 | Q8TF74 | 359 |
| RAPGEFL1 | GOLGA8O | A6NCC3 | 357 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RAPGEFL1 | LRPAP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RAPGEFL1 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MLH1 | RAPGEFL1 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (7): RAPGEFL1 (Affinity Capture-RNA), RAPGEFL1 (Proximity Label-MS), RAPGEFL1 (Proximity Label-MS), RAPGEFL1 (Affinity Capture-RNA), RAPGEFL1 (Cross-Linking-MS (XL-MS)), APP (Reconstituted Complex), RAPGEFL1 (Two-hybrid)
ESM2 similar proteins: A0A140LI67, A0JMF6, A1L3T7, A2BGG1, A4FU01, A6NE52, D4A929, O15287, O35827, O75064, O95398, O95704, P58660, P97680, Q13671, Q3U1Y4, Q3V1L6, Q400C9, Q562E7, Q58EX7, Q5ND34, Q5PQS0, Q5RA67, Q5XIS1, Q68EF8, Q6IRN0, Q6P4K6, Q6ZNJ1, Q6ZQA0, Q76MJ5, Q7TSI1, Q80VA5, Q8CFK6, Q8IV53, Q8K330, Q8NCE2, Q8R2S1, Q8R5G7, Q8TE77, Q8VCC8
Diamond homologs: A0JM95, A4IFE4, F1M386, F1MSG6, F1PBJ0, O95398, P28818, P83900, Q02342, Q0VAM2, Q28EC1, Q5RC04, Q6DBW1, Q6DHR3, Q8C0Q9, Q8CHG7, Q8IS19, Q8JZL7, Q8MVR1, Q8N431, Q8N9B8, Q8VCC8, Q8WZA2, Q92565, Q95KH6, Q9D300, Q9EQZ6, Q9UHV5, Q9Y4G8, Q9Z1C7, Q9Z1C8, A2AR50, A2CEA7, A7A0P0, B0M0P8, B3LTF3, B5VMS9, C8ZCV7, E9Q9W7, G5EDB9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
61 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 48 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3108 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:40177926:G:GT | donor_gain | 1.0000 |
| 17:40177926:G:T | donor_gain | 1.0000 |
| 17:40178379:CAGG:C | donor_loss | 1.0000 |
| 17:40178381:GGT:G | donor_loss | 1.0000 |
| 17:40178382:G:A | donor_loss | 1.0000 |
| 17:40178383:T:A | donor_loss | 1.0000 |
| 17:40184679:G:GG | donor_gain | 1.0000 |
| 17:40188974:TGAGA:T | donor_gain | 1.0000 |
| 17:40188975:GAGA:G | donor_gain | 1.0000 |
| 17:40188975:GAGAG:G | donor_gain | 1.0000 |
| 17:40188977:GA:G | donor_gain | 1.0000 |
| 17:40188978:AGT:A | donor_loss | 1.0000 |
| 17:40188979:G:GG | donor_gain | 1.0000 |
| 17:40188979:G:T | donor_loss | 1.0000 |
| 17:40188983:GT:G | donor_gain | 1.0000 |
| 17:40189206:A:AG | acceptor_gain | 1.0000 |
| 17:40189207:G:GA | acceptor_gain | 1.0000 |
| 17:40190528:TCTGG:T | donor_loss | 1.0000 |
| 17:40190529:CTGG:C | donor_loss | 1.0000 |
| 17:40190530:TGG:T | donor_loss | 1.0000 |
| 17:40190532:G:GC | donor_loss | 1.0000 |
| 17:40190533:T:G | donor_loss | 1.0000 |
| 17:40191279:T:TA | acceptor_gain | 1.0000 |
| 17:40191471:G:GT | donor_gain | 1.0000 |
| 17:40191490:GCCCT:G | donor_gain | 1.0000 |
| 17:40191493:CT:C | donor_gain | 1.0000 |
| 17:40191493:CTGT:C | donor_loss | 1.0000 |
| 17:40191494:TGTG:T | donor_loss | 1.0000 |
| 17:40191495:G:GG | donor_gain | 1.0000 |
| 17:40191495:GT:G | donor_loss | 1.0000 |
AlphaMissense
4246 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:40189250:T:A | I330K | 1.000 |
| 17:40190500:T:C | F394S | 1.000 |
| 17:40192634:G:C | R562P | 1.000 |
| 17:40192691:A:T | K581I | 1.000 |
| 17:40192692:A:C | K581N | 1.000 |
| 17:40192692:A:T | K581N | 1.000 |
| 17:40192929:T:C | L583P | 1.000 |
| 17:40192934:T:C | F585L | 1.000 |
| 17:40192936:C:A | F585L | 1.000 |
| 17:40192936:C:G | F585L | 1.000 |
| 17:40193373:C:A | A607D | 1.000 |
| 17:40181637:T:A | V181D | 0.999 |
| 17:40188921:T:C | F297L | 0.999 |
| 17:40188922:T:C | F297S | 0.999 |
| 17:40188923:C:A | F297L | 0.999 |
| 17:40188923:C:G | F297L | 0.999 |
| 17:40188973:A:T | D314V | 0.999 |
| 17:40189210:T:C | F317L | 0.999 |
| 17:40189211:T:C | F317S | 0.999 |
| 17:40189212:C:A | F317L | 0.999 |
| 17:40189212:C:G | F317L | 0.999 |
| 17:40189213:T:C | C318R | 0.999 |
| 17:40189220:T:A | V320E | 0.999 |
| 17:40189222:T:G | Y321D | 0.999 |
| 17:40189237:T:C | S326P | 0.999 |
| 17:40189240:T:G | Y327D | 0.999 |
| 17:40189250:T:G | I330R | 0.999 |
| 17:40189352:T:A | L364Q | 0.999 |
| 17:40189352:T:C | L364P | 0.999 |
| 17:40190467:T:A | V383D | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000002518 (17:40175807 C>T), RS1000202385 (17:40195833 G>C), RS1000212969 (17:40179255 CAG>C), RS1000245370 (17:40179573 G>T), RS1000416605 (17:40185555 G>A), RS1000627615 (17:40193709 A>G), RS1000788987 (17:40185304 A>T), RS1000864634 (17:40191021 G>A,T), RS1000962265 (17:40181688 A>C), RS1001225420 (17:40187375 C>T), RS1001385000 (17:40192210 C>T), RS1001468104 (17:40175069 G>A), RS1001752723 (17:40191865 A>G), RS1001794343 (17:40177406 G>A), RS1001836173 (17:40176984 G>A,T)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:611762
GenCC curated gene-disease
Mondo (2): prostate cancer (MONDO:0008315), familial cold autoinflammatory syndrome 2 (MONDO:0012724)
Orphanet (2): Familial prostate cancer (Orphanet:1331), NLRP12-associated hereditary periodic fever syndrome (Orphanet:247868)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008916_85 | Asthma | 2.000000e-12 |
| GCST010242_333 | HDL cholesterol levels | 3.000000e-13 |
| GCST90002394_400 | Monocyte percentage of white cells | 2.000000e-10 |
| GCST90002407_135 | White blood cell count | 5.000000e-15 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0007989 | monocyte percentage of leukocytes |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| C567090 | Familial Cold Autoinflammatory Syndrome 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | affects cotreatment, decreases expression, increases expression | 7 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, affects expression | 4 |
| Arsenic | decreases expression, increases abundance, affects cotreatment | 3 |
| bisphenol A | decreases methylation, increases expression | 2 |
| sodium arsenate | decreases expression, increases abundance | 2 |
| Decitabine | affects reaction, affects expression, decreases expression | 2 |
| Air Pollutants | affects expression, increases abundance, increases expression | 2 |
| Ozone | affects cotreatment, increases expression, affects expression, increases abundance | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| Genistein | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| arsenite | decreases expression, increases abundance | 1 |
| butyraldehyde | decreases expression | 1 |
| monomethylarsonic acid | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| arsenic acid | decreases expression, increases abundance | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases expression | 1 |
| pentanal | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| mono-benzyl phthalate | increases methylation | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| clothianidin | decreases expression | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | increases expression | 1 |
| dimethylmonothioarsinic acid | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
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| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
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| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
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| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
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Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial cold autoinflammatory syndrome 2