RARRES1
gene geneOn this page
Also known as TIG1LXNL
Summary
RARRES1 (retinoic acid receptor responder 1, HGNC:9867) is a protein-coding gene on chromosome 3q25.32, encoding Retinoic acid receptor responder protein 1 (P49788). Inhibitor of the cytoplasmic carboxypeptidase AGBL2, may regulate the alpha-tubulin tyrosination cycle.
This gene was identified as a retinoid acid (RA) receptor-responsive gene. It encodes a type 1 membrane protein. The expression of this gene is upregulated by tazarotene as well as by retinoic acid receptors. The expression of this gene is found to be downregulated in prostate cancer, which is caused by the methylation of its promoter and CpG island. Alternatively spliced transcript variant encoding distinct isoforms have been observed.
Source: NCBI Gene 5918 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 51 total
- MANE Select transcript:
NM_206963
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9867 |
| Approved symbol | RARRES1 |
| Name | retinoic acid receptor responder 1 |
| Location | 3q25.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TIG1, LXNL |
| Ensembl gene | ENSG00000118849 |
| Ensembl biotype | protein_coding |
| OMIM | 605090 |
| Entrez | 5918 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 6 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000237696, ENST00000462663, ENST00000471444, ENST00000479756, ENST00000498640, ENST00000879325, ENST00000950251, ENST00000950252, ENST00000950253
RefSeq mRNA: 2 — MANE Select: NM_206963
NM_002888, NM_206963
CCDS: CCDS3184, CCDS54665
Canonical transcript exons
ENST00000237696 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000801677 | 158710738 | 158710933 |
| ENSE00001192529 | 158696892 | 158697827 |
| ENSE00001192534 | 158697908 | 158697970 |
| ENSE00001883911 | 158732140 | 158732457 |
| ENSE00003486303 | 158704791 | 158704927 |
| ENSE00003697725 | 158713797 | 158713859 |
Expression profiles
Bgee: expression breadth ubiquitous, 234 present calls, max score 99.74.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.0712 / max 1284.8399, expressed in 937 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 45333 | 15.8010 | 762 |
| 45338 | 1.0537 | 443 |
| 45331 | 0.4438 | 246 |
| 45335 | 0.3220 | 148 |
| 45332 | 0.2425 | 128 |
| 45336 | 0.1549 | 81 |
| 45337 | 0.0429 | 13 |
| 45334 | 0.0104 | 2 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pericardium | UBERON:0002407 | 99.74 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 99.45 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.14 | gold quality |
| left uterine tube | UBERON:0001303 | 98.51 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.42 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 97.98 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 97.70 | gold quality |
| omental fat pad | UBERON:0010414 | 97.49 | gold quality |
| peritoneum | UBERON:0002358 | 97.48 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.30 | gold quality |
| urethra | UBERON:0000057 | 96.82 | gold quality |
| parietal pleura | UBERON:0002400 | 96.81 | gold quality |
| cauda epididymis | UBERON:0004360 | 96.79 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 95.72 | gold quality |
| minor salivary gland | UBERON:0001830 | 95.59 | gold quality |
| right ovary | UBERON:0002118 | 95.43 | gold quality |
| right atrium auricular region | UBERON:0006631 | 95.14 | gold quality |
| caput epididymis | UBERON:0004358 | 95.13 | gold quality |
| left ovary | UBERON:0002119 | 94.50 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 94.19 | gold quality |
| rectum | UBERON:0001052 | 94.02 | gold quality |
| cardiac atrium | UBERON:0002081 | 93.92 | gold quality |
| corpus epididymis | UBERON:0004359 | 93.87 | gold quality |
| pleura | UBERON:0000977 | 93.63 | gold quality |
| endocervix | UBERON:0000458 | 93.25 | gold quality |
| tibial nerve | UBERON:0001323 | 93.22 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 93.04 | gold quality |
| left coronary artery | UBERON:0001626 | 92.90 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 92.32 | gold quality |
| coronary artery | UBERON:0001621 | 92.26 | gold quality |
Single-cell (SCXA)
Detected in 9 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 4836.65 |
| E-GEOD-135922 | yes | 3665.96 |
| E-HCAD-15 | yes | 2423.28 |
| E-CURD-126 | yes | 2374.72 |
| E-MTAB-8559 | yes | 2177.06 |
| E-MTAB-10662 | yes | 1906.31 |
| E-MTAB-10885 | yes | 359.20 |
| E-HCAD-1 | yes | 82.37 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CTCF, RARA
miRNA regulators (miRDB)
6 targeting RARRES1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3688-5P | 99.12 | 69.67 | 1091 |
| HSA-MIR-8070 | 99.07 | 69.30 | 1303 |
| HSA-MIR-8066 | 99.05 | 68.66 | 1532 |
| HSA-MIR-508-3P | 98.66 | 69.62 | 887 |
| HSA-MIR-891A-3P | 98.05 | 67.99 | 970 |
| HSA-MIR-6750-3P | 96.79 | 67.50 | 740 |
Literature-anchored findings (GeneRIF, showing 35)
- Silencing of TIG1 promoter by hypermethylation is common in human cancers and may contribute to the loss of retinoic acid responsiveness in some neoplastic cells. (PMID:15059893)
- results show that inactivation of the retinoic acid signaling-associated genes RAR-beta, CRBP1, and TIG1 by DNA methylation occurs frequently in esophageal squamous cell carcinoma (PMID:16128742)
- Hypermethylation of tazarotene-induced gene 1 is associated with gastric carcinogenesis (PMID:16134180)
- TIG1 overexpression in SASC inhibited their differentiation into osteocytes and the expression of osteocalcin (PMID:19250291)
- Findings suggest that TIG1 may play a role in cellular proliferation and invasion in NPC cells and that its function may be dependent on the EBV status. (PMID:19737656)
- TIG1 undergoes frequent epigenetic inactivation due to aberrant DNA hypermethylation in gastric cancers. (PMID:19806788)
- The results of this study suggested that short RAI1 alleles might be releated to schizophreina disease. (PMID:21168224)
- RARRES1, its interacting partners AGBL2, Eg5/KIF11, another EEY-bearing protein (EB1), and the microtubule tyrosination cycle are important in tumorigenesis. (PMID:21303978)
- GRK5 mediates cell growth suppression by TIG1A. Thus, TIG1 may participate in the downregulation of G-protein coupled signaling by upregulating GRK5 expression. (PMID:21575264)
- TIG1 suppressed PGE2-stimulated Wnt and cAMP signaling pathways in colon cancer cells through GRK5. (PMID:22126303)
- genotype-associated hypermethylation of the ETS-family target gene RARRES1 influences methylation at its neighbor gene LXN and could be useful as a prognostic biomarker. (PMID:22573467)
- Knocking-down CTCF expression hampered RARRES1 expression. (PMID:22615834)
- Analysis of a standard liver fibrosis model (CCl(4)) demonstrated an early induction of RARRES1 mRNA and protein expression. (PMID:22669512)
- All-trans retinoic acid modulated secretion of RARRES1 in a dose dependent manner. (PMID:22942771)
- our data suggested that epigenetic silencing of TIG1 gene expression by promoter hypermethylation may play an important role in hepatocellular carcinoma . (PMID:24006221)
- High TIG1 expression is associated with inflammatory breast cancer through activation of Axl kinase. (PMID:24014597)
- Data show that retinoic acid receptor responder 1 (RARRES1) expression is subtype-dependent and regulated by DNA methylation and the expression of aldehyde dehydrogenase 1A3 (ALDH1A3). (PMID:27286452)
- Authors found that transmembrane protein 192 (TMEM192) interacted with TIG1. Authors also found that both TIG1A and TIG1B isoforms interacted and co-localized with TMEM192 in HtTA cervical cancer cells. The expression of TIG1 induced the expression of autophagy-related proteins. (PMID:27989102)
- Data suggest that Retinoic Acid Receptor Responder (RARRES1)/ Tazarotene-induced gene-1 (TIG-1) may serve as a target for therapeutic intervention both in cancer and in angiogenesis-related disorders. (PMID:28678839)
- Data demonstrated that RARRES1 expression is lost in choriocarcinoma tumors due to promotor hypermethylation. Also, further results hypothesized that RARRES1 might be a negative regulator of EMT through induction of contact inhibition. (PMID:29169400)
- TIG1 interacted with DNAJC8 in the cytosol, and this interaction completely blocked DNAJC8-mediated PKM2 translocation and inhibited glucose uptake. Furthermore, increased glycose uptake was observed in cells in which TIG1 was silenced. (PMID:29902837)
- Study demonstrates that RARRES1 depletion in epithelial cells caused a global increase in lipid synthesis. RARRES1-depleted cells rewire glucose metabolism by switching from aerobic glycolysis to glucose-dependent de novo lipogenesis. Treatment with fatty acid synthase inhibitor reversed the effects of RARRES1 depletion. (PMID:30557378)
- Investigated whether tazarotene-induced gene 1 protein (TIG1) affects the activity of urokinase plasminogen-type activator, which is negatively regulated by serine peptidase inhibitor Kazal type 2 (SPINK2), potentially preventing epithelial mesenchymal transition and suppressing cell migration and invasion. (PMID:31886233)
- Expression of RARRES1 and AGBL2 and progression of conventional renal cell carcinoma. (PMID:32307444)
- Soluble RARRES1 induces podocyte apoptosis to promote glomerular disease progression. (PMID:32634130)
- Cathepsin V Mediates the Tazarotene-induced Gene 1-induced Reduction in Invasion in Colorectal Cancer Cells. (PMID:32918681)
- Tazarotene-induced gene 1 interacts with Polo-like kinase 2 and inhibits cell proliferation in HCT116 colorectal cancer cells. (PMID:34314079)
- Autocrine and paracrine effects of a novel podocyte gene, RARRES1. (PMID:34556297)
- Involvement of miR-769-5p/Retinoic Acid Receptor Responder 1 Axis in the Progression of Osteosarcoma: Characterization of Potential Therapeutic Targets. (PMID:35152215)
- Interaction of RARRES1 with ICAM1 modulates macrophages to suppress the progression of kidney renal clear cell carcinoma. (PMID:36353618)
- GDF15 Mediates the Effect of Skeletal Muscle Contraction on Glucose-Stimulated Insulin Secretion. (PMID:37224335)
- TIG1 Inhibits the mTOR Signaling Pathway in Malignant Melanoma Through the VAC14 Protein. (PMID:37247911)
- Podocyte-derived soluble RARRES1 drives kidney disease progression through direct podocyte and proximal tubular injury. (PMID:38697478)
- RARRES1 identified by comprehensive bioinformatic analysis and experimental validation as a promising biomarker in Skin Cutaneous Melanoma. (PMID:38898266)
- Tazarotene-induced Gene 1 Induces Melanoma Cell Death by Triggering Endoplasmic Reticulum Stress Response. (PMID:38940043)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Rarres1 | ENSMUSG00000049404 |
| rattus_norvegicus | Rarres1 | ENSRNOG00000037853 |
Paralogs (1): LXN (ENSG00000079257)
Protein
Protein identifiers
Retinoic acid receptor responder protein 1 — P49788 (reviewed: P49788)
Alternative names: Phorbol ester-induced gene 1 protein, RAR-responsive protein TIG1, Tazarotene-induced gene 1 protein
All UniProt accessions (1): P49788
UniProt curated annotations — full annotation on UniProt →
Function. Inhibitor of the cytoplasmic carboxypeptidase AGBL2, may regulate the alpha-tubulin tyrosination cycle.
Subunit / interactions. Interacts with AGBL2, KIF11 and MAPRE1.
Subcellular location. Membrane. Secreted.
Tissue specificity. Detected in urine (at protein level).
Post-translational modifications. Not N-glycosylated. O-glycosylated; contains chondroitin sulfate.
Induction. By tazarotene and by all the retinoic acid receptors tested.
Similarity. Belongs to the protease inhibitor I47 (latexin) family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P49788-1 | 2 | yes |
| P49788-2 | 1 |
RefSeq proteins (2): NP_002879, NP_996846* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR009684 | Latexin | Family |
| IPR027261 | TIG1 | Family |
| IPR046350 | Cystatin_sf | Homologous_superfamily |
| IPR049897 | CYSTATIN_LXN | Domain |
Pfam: PF06907
UniProt features (13 total): topological domain 2, sequence variant 2, domain 2, splice variant 2, chain 1, sequence conflict 1, transmembrane region 1, region of interest 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49788-F1 | 79.64 | 0.60 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (1): 40
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 156 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_UP, LI_PROSTATE_CANCER_EPIGENETIC, RIZKI_TUMOR_INVASIVENESS_3D_DN, SARRIO_EPITHELIAL_MESENCHYMAL_TRANSITION_DN, CHANDRAN_METASTASIS_DN, HINATA_NFKB_TARGETS_KERATINOCYTE_UP, MISSIAGLIA_REGULATED_BY_METHYLATION_UP, RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP, YANG_BREAST_CANCER_ESR1_DN, RIGGI_EWING_SARCOMA_PROGENITOR_DN, SCHLOSSER_SERUM_RESPONSE_DN, TURASHVILI_BREAST_DUCTAL_CARCINOMA_VS_DUCTAL_NORMAL_DN, NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN, SMID_BREAST_CANCER_RELAPSE_IN_BRAIN_UP, MODULE_6
GO Biological Process (1): negative regulation of cell population proliferation (GO:0008285)
GO Molecular Function (3): metalloendopeptidase inhibitor activity (GO:0008191), protein binding (GO:0005515), peptidase inhibitor activity (GO:0030414)
GO Cellular Component (4): obsolete extracellular space (GO:0005615), membrane (GO:0016020), extracellular exosome (GO:0070062), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| metalloendopeptidase activity | 1 |
| endopeptidase inhibitor activity | 1 |
| binding | 1 |
| enzyme inhibitor activity | 1 |
| peptidase activity | 1 |
| peptidase regulator activity | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
718 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RARRES1 | AGBL2 | Q5U5Z8 | 697 |
| RARRES1 | CD38 | P28907 | 636 |
| RARRES1 | CRABP2 | P29373 | 617 |
| RARRES1 | RARA | P10276 | 613 |
| RARRES1 | TMEM192 | Q8IY95 | 604 |
| RARRES1 | RARB | P10826 | 570 |
| RARRES1 | RARG | P13631 | 533 |
| RARRES1 | DHRS3 | O75911 | 519 |
| RARRES1 | PLAAT4 | Q9UL19 | 415 |
| RARRES1 | SNAPC4 | Q5SXM2 | 400 |
| RARRES1 | SMYD5 | Q6GMV2 | 384 |
| RARRES1 | EXOC1L | A0A1B0GW35 | 379 |
| RARRES1 | MEPE | Q9NQ76 | 352 |
| RARRES1 | BPIFB4 | P59827 | 348 |
| RARRES1 | NREP | Q16612 | 347 |
IntAct
10 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SPINK2 | RARRES1 | psi-mi:“MI:0915”(physical association) | 0.460 |
| RARRES1 | SPINK2 | psi-mi:“MI:0915”(physical association) | 0.460 |
| SPINK2 | RARRES1 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| GJB5 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| METAP2 | LAD1 | psi-mi:“MI:0914”(association) | 0.350 |
| DAPP1 | GAK | psi-mi:“MI:0914”(association) | 0.350 |
| RARRES1 | ZNF609 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (23): RARRES1 (Affinity Capture-MS), ZNF318 (Affinity Capture-MS), SULF2 (Affinity Capture-MS), RARRES1 (Affinity Capture-MS), RARRES1 (Affinity Capture-MS), WIZ (Affinity Capture-MS), EPS15 (Affinity Capture-MS), RAPGEF6 (Affinity Capture-MS), KHDRBS3 (Affinity Capture-MS), ZNF644 (Affinity Capture-MS), TPX2 (Affinity Capture-MS), ITPKC (Affinity Capture-MS), LRIG3 (Affinity Capture-MS), KHDRBS1 (Affinity Capture-MS), ZNF609 (Affinity Capture-MS)
ESM2 similar proteins: O19131, O70280, O95998, P19438, P29590, P49788, P50555, Q06VW1, Q0ZFW8, Q13477, Q27967, Q29108, Q29RH0, Q29RS5, Q2IAL6, Q2IAL7, Q2NKZ5, Q5DRQ8, Q5R551, Q5W186, Q62522, Q62740, Q68US5, Q6AZ51, Q6BAA4, Q6QLQ5, Q6UWN0, Q6WN34, Q6ZVW7, Q70TH4, Q711S8, Q76LW6, Q8BH06, Q8HDG8, Q8IZI9, Q8K1I3, Q8N1F8, Q8N907, Q8NAC3, Q8NFR9
Diamond homologs: P49788, P70202, Q64361, Q90YI1, Q9BS40
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CTCF | “up-regulates quantity by expression” | RARRES1 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
51 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 40 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1287 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:158704790:CCCA:C | donor_gain | 1.0000 |
| 3:158697796:C:CT | acceptor_gain | 0.9900 |
| 3:158697824:TTTC:T | acceptor_gain | 0.9900 |
| 3:158697825:TTCC:T | acceptor_loss | 0.9900 |
| 3:158697826:TCCTA:T | acceptor_loss | 0.9900 |
| 3:158697827:CCTAG:C | acceptor_loss | 0.9900 |
| 3:158697828:C:CC | acceptor_gain | 0.9900 |
| 3:158697828:C:G | acceptor_loss | 0.9900 |
| 3:158697829:T:C | acceptor_loss | 0.9900 |
| 3:158698056:G:A | donor_gain | 0.9900 |
| 3:158698070:ACTG:A | donor_gain | 0.9900 |
| 3:158698071:CTGC:C | donor_gain | 0.9900 |
| 3:158698073:G:GA | donor_gain | 0.9900 |
| 3:158699464:C:A | donor_gain | 0.9900 |
| 3:158708220:T:TA | donor_gain | 0.9900 |
| 3:158708244:T:TA | donor_gain | 0.9900 |
| 3:158713790:AGCTT:A | donor_loss | 0.9900 |
| 3:158713792:CTTA:C | donor_loss | 0.9900 |
| 3:158713793:TTACC:T | donor_loss | 0.9900 |
| 3:158713794:T:TA | donor_loss | 0.9900 |
| 3:158713795:A:AG | donor_loss | 0.9900 |
| 3:158713796:CCT:C | donor_gain | 0.9900 |
| 3:158732031:C:A | donor_gain | 0.9900 |
| 3:158732623:A:AC | donor_gain | 0.9900 |
| 3:158697825:TTC:T | acceptor_gain | 0.9800 |
| 3:158697971:C:CC | acceptor_gain | 0.9800 |
| 3:158698070:A:AC | donor_gain | 0.9800 |
| 3:158698071:C:CC | donor_gain | 0.9800 |
| 3:158699463:C:CA | donor_gain | 0.9800 |
| 3:158704789:AC:A | donor_gain | 0.9800 |
AlphaMissense
1897 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:158713821:G:C | F105L | 0.986 |
| 3:158713821:G:T | F105L | 0.986 |
| 3:158713823:A:G | F105L | 0.986 |
| 3:158697797:A:G | W256R | 0.985 |
| 3:158697797:A:T | W256R | 0.985 |
| 3:158704866:G:C | S199R | 0.979 |
| 3:158704866:G:T | S199R | 0.979 |
| 3:158704868:T:G | S199R | 0.979 |
| 3:158732203:G:C | N71K | 0.975 |
| 3:158732203:G:T | N71K | 0.975 |
| 3:158697795:C:A | W256C | 0.972 |
| 3:158697795:C:G | W256C | 0.972 |
| 3:158713822:A:C | F105C | 0.969 |
| 3:158713822:A:G | F105S | 0.969 |
| 3:158704853:A:G | W204R | 0.968 |
| 3:158704853:A:T | W204R | 0.968 |
| 3:158704851:C:A | W204C | 0.967 |
| 3:158704851:C:G | W204C | 0.967 |
| 3:158710877:G:C | F132L | 0.962 |
| 3:158710877:G:T | F132L | 0.962 |
| 3:158710879:A:G | F132L | 0.962 |
| 3:158697815:A:G | C250R | 0.960 |
| 3:158710890:G:T | A128D | 0.960 |
| 3:158710896:C:G | C126S | 0.960 |
| 3:158710897:A:T | C126S | 0.960 |
| 3:158710878:A:C | F132C | 0.958 |
| 3:158710897:A:G | C126R | 0.955 |
| 3:158732200:G:C | F72L | 0.954 |
| 3:158732200:G:T | F72L | 0.954 |
| 3:158732202:A:G | F72L | 0.954 |
dbSNP variants (sampled 300 via entrez): RS1000002439 (3:158713531 CTCCCAGGGGTCCCAAGGAAGAGGGAGG>C), RS1000041900 (3:158719365 G>A), RS1000088176 (3:158697939 T>C,G), RS1000300190 (3:158701186 A>G), RS1000301221 (3:158729394 A>G), RS1000309893 (3:158715766 C>T), RS1000409050 (3:158707162 A>G), RS1000455646 (3:158722725 A>G), RS1000591663 (3:158730593 C>T), RS1000818676 (3:158702639 C>T), RS1000948684 (3:158716583 A>C,G,T), RS1000956645 (3:158711335 C>T), RS1000994098 (3:158723567 G>A), RS1001218072 (3:158726838 G>A), RS1001302579 (3:158711647 G>A)
Disease associations
OMIM: gene MIM:605090 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006479_44 | Diverticular disease | 4.000000e-06 |
| GCST006585_498 | Blood protein levels | 0.000000e+00 |
| GCST007267_184 | Systolic blood pressure | 2.000000e-09 |
| GCST007611_15 | Chronic obstructive pulmonary disease or high blood pressure (pleiotropy) | 1.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009959 | diverticular disease |
| EFO:0006335 | systolic blood pressure |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
72 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, affects expression, increases expression, affects cotreatment | 6 |
| sodium arsenite | decreases expression, increases expression | 4 |
| bisphenol A | increases expression, affects cotreatment, decreases expression | 3 |
| trichostatin A | increases expression, affects cotreatment, affects expression, affects methylation, decreases expression | 2 |
| Decitabine | affects cotreatment, affects expression, affects methylation, decreases expression, decreases reaction | 2 |
| Acetaminophen | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 2 |
| Calcitriol | increases expression | 2 |
| Dexamethasone | increases expression, decreases expression, affects cotreatment | 2 |
| Progesterone | affects cotreatment, decreases expression, increases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| Aflatoxin B1 | decreases expression, increases methylation, decreases reaction | 2 |
| aristolochic acid I | increases expression | 1 |
| 4-oxoretinoic acid | increases expression | 1 |
| urushiol | increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| apocarotenal | increases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| 3,4-dichloroaniline | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| 16 alpha-ethyl-21-hydroxy-19-nor-4-pregnene-3,20-dione | increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| potassium chromate(VI) | decreases expression, affects cotreatment | 1 |
| aflatoxin B2 | increases methylation | 1 |
| cupric chloride | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| 4-oxoretinol | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.