RASA1
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Also known as GAPCM-AVMp120GAPp120RASGAPp120
Summary
RASA1 (RAS p21 protein activator 1, HGNC:9871) is a protein-coding gene on chromosome 5q14.3, encoding Ras GTPase-activating protein 1 (P20936). GTPase-activating protein (GAP) that stimulates the intrinsic GTPase activity of Ras proteins, such as NRAS, facilitating their transition from the active GTP-bound state to the inactive GDP-bound state, thereby terminating Ras signaling. In precision oncology, RASA1 Loss-of-function confers sensitivity to Trametinib in Lung Non-small Cell Carcinoma (CIViC Level D). It is haploinsufficient (ClinGen: sufficient evidence).
The protein encoded by this gene is located in the cytoplasm and is part of the GAP1 family of GTPase-activating proteins. The gene product stimulates the GTPase activity of normal RAS p21 but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Mutations also have been associated with hereditary capillary malformations (CM) with or without arteriovenous malformations (AVM) and Parkes Weber syndrome. Alternative splicing results in two isoforms where the shorter isoform, lacking the N-terminal hydrophobic region but retaining the same activity, appears to be abundantly expressed in placental but not adult tissues.
Source: NCBI Gene 5921 — RefSeq curated summary.
At a glance
- Gene–disease (curated): capillary malformation-arteriovenous malformation 1 (Definitive, GenCC) — +4 more curated relationships
- GWAS associations: 7
- Clinical variants (ClinVar): 400 total — 32 pathogenic, 7 likely-pathogenic
- Phenotypes (HPO): 47
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 2 cancer types
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_002890
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9871 |
| Approved symbol | RASA1 |
| Name | RAS p21 protein activator 1 |
| Location | 5q14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GAP, CM-AVM, p120GAP, p120RASGAP, p120 |
| Ensembl gene | ENSG00000145715 |
| Ensembl biotype | protein_coding |
| OMIM | 139150 |
| Entrez | 5921 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 1 retained_intron, 1 nonsense_mediated_decay
ENST00000274376, ENST00000456692, ENST00000506290, ENST00000509953, ENST00000512763, ENST00000515800, ENST00000888488, ENST00000888489, ENST00000888490, ENST00000962098
RefSeq mRNA: 2 — MANE Select: NM_002890
NM_002890, NM_022650
CCDS: CCDS34200, CCDS47243
Canonical transcript exons
ENST00000274376 — 25 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001082148 | 87389393 | 87389527 |
| ENSE00001162572 | 87331348 | 87331500 |
| ENSE00001505328 | 87333267 | 87333337 |
| ENSE00001505329 | 87332507 | 87332642 |
| ENSE00002051467 | 87390800 | 87391916 |
| ENSE00002242328 | 87337974 | 87338091 |
| ENSE00003467145 | 87376393 | 87376565 |
| ENSE00003475407 | 87363348 | 87363504 |
| ENSE00003479075 | 87386826 | 87386903 |
| ENSE00003483441 | 87353157 | 87353235 |
| ENSE00003484839 | 87349214 | 87349364 |
| ENSE00003503289 | 87346672 | 87346724 |
| ENSE00003505177 | 87383713 | 87383780 |
| ENSE00003510021 | 87369813 | 87369900 |
| ENSE00003538796 | 87385301 | 87385389 |
| ENSE00003563873 | 87341290 | 87341321 |
| ENSE00003579086 | 87378396 | 87378538 |
| ENSE00003580162 | 87376881 | 87377040 |
| ENSE00003593259 | 87380509 | 87380595 |
| ENSE00003626345 | 87372118 | 87372195 |
| ENSE00003642171 | 87379735 | 87379850 |
| ENSE00003644795 | 87362551 | 87362671 |
| ENSE00003655477 | 87374840 | 87374916 |
| ENSE00003675497 | 87374163 | 87374320 |
| ENSE00003889972 | 87267883 | 87268990 |
Expression profiles
Bgee: expression breadth ubiquitous, 298 present calls, max score 98.98.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 25.6003 / max 945.7019, expressed in 1808 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 57455 | 17.3940 | 1800 |
| 57464 | 2.0837 | 334 |
| 57461 | 1.9258 | 1072 |
| 57458 | 1.3580 | 696 |
| 57462 | 0.9450 | 577 |
| 57457 | 0.5622 | 335 |
| 57454 | 0.5032 | 227 |
| 57456 | 0.2991 | 128 |
| 57460 | 0.2630 | 116 |
| 57459 | 0.1989 | 67 |
Top tissues by expression
301 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 98.98 | gold quality |
| placenta | UBERON:0001987 | 98.07 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 97.69 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.46 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 96.53 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 96.32 | gold quality |
| retina | UBERON:0000966 | 96.29 | gold quality |
| skin of hip | UBERON:0001554 | 96.02 | gold quality |
| tibia | UBERON:0000979 | 95.73 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 95.63 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 95.62 | gold quality |
| parietal pleura | UBERON:0002400 | 95.61 | gold quality |
| pleura | UBERON:0000977 | 95.50 | gold quality |
| corpus epididymis | UBERON:0004359 | 95.40 | gold quality |
| visceral pleura | UBERON:0002401 | 95.27 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 95.08 | gold quality |
| caput epididymis | UBERON:0004358 | 95.01 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 94.90 | gold quality |
| oocyte | CL:0000023 | 94.57 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 94.49 | gold quality |
| entorhinal cortex | UBERON:0002728 | 94.46 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 94.37 | gold quality |
| periodontal ligament | UBERON:0008266 | 94.34 | gold quality |
| cauda epididymis | UBERON:0004360 | 94.23 | gold quality |
| cranial nerve II | UBERON:0000941 | 94.15 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 94.09 | gold quality |
| postcentral gyrus | UBERON:0002581 | 94.01 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.93 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 93.89 | gold quality |
| mammary duct | UBERON:0001765 | 93.87 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 114.12 |
| E-ANND-3 | yes | 9.93 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CIC, GATA4, JUN, MAFB, NR2E1, STAT3, TBP
miRNA regulators (miRDB)
126 targeting RASA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-101-3P | 99.94 | 75.03 | 2230 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- We show a novel alternative pathway of apoptosis in human primary cells that is mediated by transcriptionally dependent decreases in p53 and c-Myc and decreases in p21. (PMID:11751853)
- N-terminal fragment generated by caspase cleavage protects cells in a Ras/PI3K/Akt-dependent manner that does not rely on NFkappa B activation (PMID:11847220)
- mutual regulation of Ras and NF1-GAP is essential for normal neuronal differentiation (PMID:12730209)
- p21Ras, hSOS1, and p120GAP are not involved in polycystic ovary disease (PMID:15010862)
- The induction of p21 gene expression is mediated by PPARgamma ligands in lung carcinoma. (PMID:15041706)
- ligation of CD40 on EC increased association of Ras with its effector molecules Raf, Rho, and PI3K. But, it was determined that only PI3K was functional for Ras-induced VEGF transcription. (PMID:15187129)
- executioner caspases control the extent of their own activation by a feedback regulatory mechanism initiated by the partial cleavage of RasGAP that is crucial for cell survival under adverse conditions (PMID:15542850)
- p52Shc couples tyrosine kinase receptors to Ras by recruiting Grb2/Sos complexes. (PMID:15688026)
- an uncleavable N-terminal RasGAP fragment in insulin-secreting cells has a role in increasing resistance toward apoptotic stimuli without affecting glucose-induced insulin secretion (PMID:16046410)
- These results demonstrate that integrin signaling through Arg activates p190 by promoting its association with p120, resulting in recruitment of p190 to the cell periphery where it inhibits Rho. (PMID:16971514)
- novel mutation is decribed, which causes capillary malformation and limb enlargement in a patient from a family with vascular malformations (PMID:18327598)
- the spectrum of clinical manifestations due to mutations in RASA1 is wider than previously thought and also includes typical CMs not associated with AVM/AVF. (PMID:18363760)
- 42 novel RASA1 mutations and the associated phenotype in 44 families. (PMID:18446851)
- RasGAP and Capns1 interaction in oncogenic Ras cells is involved in regulating migration and cell survival. (PMID:18761085)
- found a mean Ras activation of 23.1% in cell lines with known constitutively activating ras mutations (PMID:18784923)
- p120Ras-GAP binds the DLC1 Rho-GAP tumor suppressor protein and inhibits its RhoA GTPase and growth-suppressing activities. (PMID:19151751)
- Data show that fibroblast, endothelial and carcinoma polarity during cell migration requires FAK and is associated with a complex between FAK, p120RasGAP and p190RhoGAP (p190A), leading to p190A tyrosine phosphorylation. (PMID:19435801)
- CD200R inhibits the activation of human myeloid cells through direct recruitment of Dok2 and subsequent activation of RAS p21 protein activator 1. (PMID:19786546)
- the monomeric intracellular plexin-B1 binds R-Ras but not H-Ras. These findings suggest that the monomeric form of the intracellular region is primed for GAP activity and extend a model for plexin activation. (PMID:19843518)
- In a collaborative study, 5 index patients (2 females, 3 males) with spinal AVMs or AVFs and cutaneous multifocal capillary lesions were investigated for the RASA1 gene mutation. (PMID:20007727)
- Sema4D/Plexin-B1 promotes the dephosphorylation and activation of PTEN through the R-Ras GAP activity, inducing growth cone collapse. (PMID:20610402)
- miR-132 acts as an angiogenic switch by suppressing endothelial p120RasGAP expression. (PMID:20676106)
- A novel synonymous mutation (c.1229 G > A [p.K420K]) of RASA1 was identified in a Chinese population with sporadic Sturge-Weber syndrome (PMID:20821215)
- Ras mutation cooperates with beta-catenin activation to drive bladder tumourigenesis. (PMID:21368895)
- Ca2+-dependent monomer and dimer formation switches CAPRI Protein between Ras GTPase-activating protein (GAP) and RapGAP activities (PMID:21460216)
- An important role is revealed for p120 RasGAP (RASA1) as a transgenic regulator of CD4+CD8+ double-positive cell survival and positive selection in the thymus as well as naive T cell survival in the periphery. (PMID:21646295)
- Cell adhesion to the substrate is necessary for RasGAP to bind Nck1. Cell detachment makes RasGAP incapable of associating with Nck1 and decreases RasGAP activity. (PMID:21664272)
- Nck1 activates RasGAP by direct binding in the substrate-attached but not in the suspended cells. (PMID:21664272)
- The results assign an unexpected role for p120RasGAP in the regulation of integrin traffic in cancer cells and reveal a new concept of competitive binding of Rab GTPases and GAP proteins to receptors as a regulatory mechanism in trafficking. (PMID:21768288)
- multifocal capillary malformations is the key clinical finding to suggest a RASA1 mutation (PMID:22200646)
- arguments against G3BP1 being a genuine RasGAP-binding partner (PMID:22205990)
- An update of the associated phenotype variability in a family with hereditary capillary malformations caused by a mutation in the RASA1 gene. (PMID:22342634)
- Ras and GTPase-activating protein (GAP) drive GTP into a precatalytic state as revealed by combining FTIR and biomolecular simulations (PMID:22949691)
- capillary malformation-arteriovenous malformation syndrome; study reports a family with a novel mutation in the RASA1 gene - a truncating mutation in exon 11 of RASA1 (Q503X) (PMID:23158644)
- MicroRNA-31 activates the RAS pathway and functions as an oncogenic MicroRNA by repressing RAS p21 GTPase activating protein 1 (RASA1) (PMID:23322774)
- 14-3-3 negatively regulates the RGC downstream of the PI3-kinase/Akt signaling pathway (PMID:23386617)
- The results of the present study indicate that P110, in combination with chemotherapeutics, is likely to represent a potential therapeutic strategy for cancer. (PMID:23447049)
- RASA1 mutation is responsible for the aberrant lymphatic architecture and functional abnormalities, as visualized in the PKWS subject and in the animal model. (PMID:23650393)
- results indicate that, mTOR, Bad, or Survivin are not required for p120 RasGAP fragment N to protect cells from cell death; conclude that downstream targets of Akt other than mTORC1, Bad, or survivin mediate fragment N-induced protection or that several Akt effectors can compensate for each other to induce the pro-survival fragment N-dependent responses (PMID:23826368)
- Multifocal, small, round-to-oval, pinkish-to-red cutaneous capillary malformations are seen in more than 90% of people with RASA1 mutations. (PMID:23829194)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rasa1a | ENSDARG00000035535 |
| danio_rerio | rasa1b | ENSDARG00000073665 |
| mus_musculus | Rasa1 | ENSMUSG00000021549 |
| rattus_norvegicus | Rasa1 | ENSRNOG00000029185 |
| drosophila_melanogaster | vap | FBGN0003969 |
Paralogs (10): RASAL2 (ENSG00000075391), RASAL3 (ENSG00000105122), RASA4 (ENSG00000105808), RASAL1 (ENSG00000111344), DAB2IP (ENSG00000136848), RASA2 (ENSG00000155903), RASA4B (ENSG00000170667), RASA3 (ENSG00000185989), NF1 (ENSG00000196712), SYNGAP1 (ENSG00000197283)
Protein
Protein identifiers
Ras GTPase-activating protein 1 — P20936 (reviewed: P20936)
Alternative names: Ras p21 protein activator, p120GAP
All UniProt accessions (2): E9PGC0, P20936
UniProt curated annotations — full annotation on UniProt →
Function. GTPase-activating protein (GAP) that stimulates the intrinsic GTPase activity of Ras proteins, such as NRAS, facilitating their transition from the active GTP-bound state to the inactive GDP-bound state, thereby terminating Ras signaling.
Subunit / interactions. Interacts with SQSTM1. Interacts with SPSB1; the interaction does not promote degradation. Interacts with CAV2 (tyrosine phosphorylated form). Directly interacts with NCK1. Interacts with PDGFRB (tyrosine phosphorylated). Interacts (via SH2 domain) with the ‘Tyr-9’ phosphorylated form of PDPK1. Interacts with tyrosine-phosphorylated EPHB4.
Subcellular location. Cytoplasm.
Tissue specificity. In placental villi, detected only in the trophoblast layer (cytotrophoblast and syncytiotrophoblast). Not detected in stromal, endothelial or Hofbauer cells (at protein level).
Post-translational modifications. The N-terminus is blocked. Phosphorylated by SRC and LCK. The phosphorylation SRC inhibits its ability to stimulate the Ras-GTPase activity, whereas phosphorylation by LCK does not display any effect on stimulation activity.
Disease relevance. Mutations in the SH2 domain of RASA seem to be oncogenic and cause basal cell carcinomas. Capillary malformation-arteriovenous malformation 1 (CMAVM1) [MIM:608354] A disorder characterized by atypical capillary malformations that are multiple, small, round to oval in shape and pinkish red in color. These capillary malformations are associated with either arteriovenous malformation, arteriovenous fistula, or Parkes Weber syndrome. CMAVM1 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P20936-1 | 1, Long | yes |
| P20936-2 | 2, Short | |
| P20936-3 | 3 | |
| P20936-4 | 4 |
RefSeq proteins (2): NP_002881, NP_072179 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000008 | C2_dom | Domain |
| IPR000980 | SH2 | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR001849 | PH_domain | Domain |
| IPR001936 | RasGAP_dom | Domain |
| IPR008936 | Rho_GTPase_activation_prot | Homologous_superfamily |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR023152 | RasGAP_CS | Conserved_site |
| IPR035652 | RasGAP_SH3 | Domain |
| IPR035841 | RasGAP_N_SH2 | Domain |
| IPR035842 | RasGAP_C_SH2 | Domain |
| IPR035892 | C2_domain_sf | Homologous_superfamily |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
| IPR039360 | Ras_GTPase | Family |
Pfam: PF00017, PF00018, PF00168, PF00169, PF00616
UniProt features (94 total): strand 33, helix 28, sequence variant 8, turn 7, domain 6, splice variant 6, modified residue 3, chain 1, sequence conflict 1, site 1
Structure
Experimental structures (PDB)
15 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2J05 | X-RAY DIFFRACTION | 1.5 |
| 6WAX | X-RAY DIFFRACTION | 1.5 |
| 6WAY | X-RAY DIFFRACTION | 1.5 |
| 1WER | X-RAY DIFFRACTION | 1.6 |
| 6PXC | X-RAY DIFFRACTION | 1.6 |
| 6PXB | X-RAY DIFFRACTION | 1.75 |
| 2J06 | X-RAY DIFFRACTION | 1.8 |
| 8DGQ | X-RAY DIFFRACTION | 1.95 |
| 8BOS | X-RAY DIFFRACTION | 2.1 |
| 4FSS | X-RAY DIFFRACTION | 2.25 |
| 9BZ4 | X-RAY DIFFRACTION | 2.45 |
| 1WQ1 | X-RAY DIFFRACTION | 2.5 |
| 2GQI | SOLUTION NMR | |
| 2GSB | SOLUTION NMR | |
| 2M51 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P20936-F1 | 77.37 | 0.34 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 789 (arginine finger; crucial for gtp hydrolysis by stabilizing the transition state)
Post-translational modifications (3): 831, 1, 615
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-186763 | Downstream signal transduction |
| R-HSA-3928662 | EPHB-mediated forward signaling |
| R-HSA-5218921 | VEGFR2 mediated cell proliferation |
| R-HSA-5658442 | Regulation of RAS by GAPs |
| R-HSA-8849471 | PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases |
MSigDB gene sets: 453 (showing top):
PID_BCR_5PATHWAY, GOBP_MITOTIC_CYTOKINESIS, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, GOBP_REGULATION_OF_PROTEIN_POLYMERIZATION, GOBP_REGULATION_OF_CELL_MORPHOGENESIS, TGCGCANK_UNKNOWN, PAL_PRMT5_TARGETS_UP, KEGG_MAPK_SIGNALING_PATHWAY, THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN, GOCC_RUFFLE, GOMF_GTPASE_BINDING, BIOCARTA_TPO_PATHWAY, CTATGCA_MIR153, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS
GO Biological Process (17): mitotic cytokinesis (GO:0000281), angiogenesis (GO:0001525), vasculogenesis (GO:0001570), negative regulation of cell-matrix adhesion (GO:0001953), negative regulation of cell adhesion (GO:0007162), signal transduction (GO:0007165), regulation of cell shape (GO:0008360), regulation of actin filament polymerization (GO:0030833), intracellular signal transduction (GO:0035556), negative regulation of apoptotic process (GO:0043066), negative regulation of neuron apoptotic process (GO:0043524), ephrin receptor signaling pathway (GO:0048013), blood vessel morphogenesis (GO:0048514), regulation of RNA metabolic process (GO:0051252), regulation of intracellular signal transduction (GO:1902531), regulation of GTPase activity (GO:0043087), system development (GO:0048731)
GO Molecular Function (8): phosphotyrosine residue binding (GO:0001784), GTPase activity (GO:0003924), GTPase activator activity (GO:0005096), signaling receptor binding (GO:0005102), potassium channel inhibitor activity (GO:0019870), GTPase binding (GO:0051020), protein binding (GO:0005515), enzyme binding (GO:0019899)
GO Cellular Component (4): ruffle (GO:0001726), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Signaling by PDGF | 1 |
| EPH-Ephrin signaling | 1 |
| VEGFA-VEGFR2 Pathway | 1 |
| RAF/MAP kinase cascade | 1 |
| Signaling by PTK6 | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| blood vessel morphogenesis | 2 |
| intracellular anatomical structure | 2 |
| GTPase activity | 2 |
| protein binding | 2 |
| cellular anatomical structure | 2 |
| mitotic cell cycle | 1 |
| cytoskeleton-dependent cytokinesis | 1 |
| mitotic cell cycle process | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| cell differentiation | 1 |
| regulation of cell-matrix adhesion | 1 |
| cell-matrix adhesion | 1 |
| negative regulation of cell-substrate adhesion | 1 |
| cell adhesion | 1 |
| regulation of cell adhesion | 1 |
| negative regulation of cellular process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| regulation of cell morphogenesis | 1 |
| regulation of biological quality | 1 |
| regulation of actin polymerization or depolymerization | 1 |
| actin filament polymerization | 1 |
| regulation of protein polymerization | 1 |
| signal transduction | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| negative regulation of apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| cell surface receptor protein tyrosine kinase signaling pathway | 1 |
| blood vessel development | 1 |
| tube morphogenesis | 1 |
| RNA metabolic process | 1 |
| regulation of nucleobase-containing compound metabolic process | 1 |
| regulation of macromolecule metabolic process | 1 |
| regulation of signal transduction | 1 |
Protein interactions and networks
STRING
4002 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RASA1 | G3BP1 | Q13283 | 993 |
| RASA1 | ARHGAP35 | Q9NRY4 | 993 |
| RASA1 | RALA | P11233 | 987 |
| RASA1 | DOK1 | Q99704 | 983 |
| RASA1 | HRAS | P01112 | 977 |
| RASA1 | DOK2 | O60496 | 963 |
| RASA1 | PXN | P49023 | 943 |
| RASA1 | RABIF | P47224 | 930 |
| RASA1 | TSC2 | P49815 | 928 |
| RASA1 | CDC42 | P21181 | 928 |
| RASA1 | ARHGAP1 | Q07960 | 913 |
| RASA1 | TSC1 | Q92574 | 913 |
| RASA1 | EGFR | P00533 | 902 |
| RASA1 | AKT1 | P31749 | 901 |
| RASA1 | SOS1 | Q07889 | 891 |
IntAct
197 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DLC1 | RASA1 | psi-mi:“MI:0915”(physical association) | 0.710 |
| RASA1 | DLC1 | psi-mi:“MI:0915”(physical association) | 0.710 |
| RASA1 | NCK1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| NCK1 | RASA1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| RASA1 | NCK1 | psi-mi:“MI:0407”(direct interaction) | 0.670 |
| RASA1 | PDGFRB | psi-mi:“MI:0914”(association) | 0.640 |
| FYB1 | NCK2 | psi-mi:“MI:0914”(association) | 0.620 |
| CAV1 | RASA1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| RASA1 | CAV1 | psi-mi:“MI:0914”(association) | 0.590 |
| RASA1 | GAB1 | psi-mi:“MI:0914”(association) | 0.590 |
| RASA1 | ERBB2 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| RASA1 | ERBB2 | psi-mi:“MI:0915”(physical association) | 0.590 |
| RASA1 | GAB1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
BioGRID (208): RASA1 (Affinity Capture-Western), RASA1 (Affinity Capture-MS), OLIG1 (Two-hybrid), RASA1 (Affinity Capture-Western), HRAS (Reconstituted Complex), HRAS (Affinity Capture-Western), RASA1 (Affinity Capture-MS), RASA1 (Affinity Capture-Western), RASA1 (Affinity Capture-RNA), RASA1 (Reconstituted Complex), DOK1 (Affinity Capture-Western), DOK2 (Affinity Capture-Western), RASA1 (Affinity Capture-MS), RASA1 (Affinity Capture-MS), RASA1 (Two-hybrid)
ESM2 similar proteins: A0A0G2JTR4, A1A4S6, A2AWA9, A4FUD6, A4II46, A6H6A9, A6QNS3, A6QQZ7, O60890, P09851, P0CAX5, P20936, P23727, P26450, P27986, P50904, Q08DP6, Q12979, Q5R372, Q5R5M3, Q5R685, Q5R6F2, Q5R8I6, Q5RCC1, Q5RCW6, Q5SSL4, Q5T2T1, Q5U2Y3, Q5ZJ17, Q5ZLX4, Q5ZMW5, Q62696, Q63787, Q6Y5D8, Q6ZQ82, Q7YQL5, Q7YQL6, Q8AVG0, Q8BPU7, Q8K0F1
Diamond homologs: A0A8I3NFE2, A0FI79, A0JNB0, A1Y2K1, A6QLK6, B2RZ59, B5KFD7, D3ZGS3, D7PF45, F1RDG9, G5ECJ6, O14306, O14796, O15357, O35324, O60880, O88890, O88900, P00519, P00520, P00521, P00522, P03949, P06239, P06241, P09851, P0CE43, P10447, P17713, P20936, P29350, P29351, P32019, P34370, P39688, P42684, P42685, P42686, P50904, P53356
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PDGFRB | up-regulates | RASA1 | binding |
| EGFR | unknown | RASA1 | phosphorylation |
| hsa-miR-31-5p | “down-regulates quantity by repression” | RASA1 | “post transcriptional regulation” |
| RASA1 | down-regulates | HRAS | binding |
| EPHB2 | up-regulates | RASA1 | binding |
| SRC | down-regulates | RASA1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 72 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by ERBB2 ECD mutants | 6 | 69.5× | 1e-08 |
| Constitutive Signaling by EGFRvIII | 5 | 61.5× | 8e-07 |
| Signaling by ERBB2 KD Mutants | 8 | 58.3× | 1e-10 |
| PI3K events in ERBB2 signaling | 5 | 57.9× | 1e-06 |
| Signaling by ERBB2 TMD/JMD mutants | 7 | 57.4× | 3e-09 |
| GRB2 events in ERBB2 signaling | 5 | 54.7× | 1e-06 |
| SHC1 events in ERBB2 signaling | 6 | 49.2× | 1e-07 |
| Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants | 5 | 49.2× | 2e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| epidermal growth factor receptor signaling pathway | 8 | 31.5× | 7e-08 |
| cell surface receptor protein tyrosine kinase signaling pathway | 10 | 27.6× | 3e-09 |
| ephrin receptor signaling pathway | 5 | 27.3× | 8e-05 |
| cellular response to epidermal growth factor stimulus | 5 | 25.2× | 1e-04 |
| epithelial cell proliferation | 5 | 24.8× | 1e-04 |
| positive regulation of epithelial cell proliferation | 6 | 23.3× | 2e-05 |
| insulin receptor signaling pathway | 6 | 21.1× | 3e-05 |
| protein autophosphorylation | 9 | 20.8× | 7e-08 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 2 cancer types — HNSC, LUSC.
Clinical variants and AI predictions
ClinVar
400 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 32 |
| Likely pathogenic | 7 |
| Uncertain significance | 207 |
| Likely benign | 113 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1075206 | NM_002890.3(RASA1):c.172_173del (p.Ala58fs) | Pathogenic |
| 1075680 | NM_002890.3(RASA1):c.442dup (p.Ala148fs) | Pathogenic |
| 1354503 | NM_002890.3(RASA1):c.538del (p.Gln180fs) | Pathogenic |
| 1451377 | NC_000005.9:g.(?86564269)(86686700_?)del | Pathogenic |
| 1457368 | NC_000005.9:g.(?86564269)(86659341_?)del | Pathogenic |
| 1477458 | NC_000005.9:g.(?86633771)(86659341_?)del | Pathogenic |
| 1527177 | GRCh37/hg19 5q14.3(chr5:86426877-86614352) | Pathogenic |
| 15999 | NM_002890.3(RASA1):c.475_476del (p.Leu159fs) | Pathogenic |
| 1992410 | NM_002890.2:c.540-406_692+21735del | Pathogenic |
| 2001480 | NM_002890.3(RASA1):c.474dup (p.Leu159fs) | Pathogenic |
| 2001727 | NM_002890.3(RASA1):c.132_152delinsACAGCGAAACTCCATCTCTCAAAAAAAAAAAAAAAAAAAAAGAAGTCTACTAAAAACAGTTTTTTTTAACTACAATATCCTAAATATACCTAATTTAGTTATAAACTAGCATAAGACTAGATTCTTTCAGTATGAAAAGTT (p.Ala45_Gly51delinsGlnArgAsnSerIleSerGlnLysLysLysLysLysLysArgSerLeuLeuLysThrValPhePheAsnTyrAsnIleLeuAsnIleProAsnLeuValIleAsnTer) | Pathogenic |
| 2042873 | NM_002890.3(RASA1):c.78del (p.Ser27fs) | Pathogenic |
| 2051636 | NM_002890.3(RASA1):c.539+4A>G | Pathogenic |
| 2115938 | NM_002890.3(RASA1):c.539+4dup | Pathogenic |
| 2195273 | NM_002890.3(RASA1):c.383_384del (p.Leu128fs) | Pathogenic |
| 2424564 | NC_000005.9:g.(?86564269)(86564827_?)del | Pathogenic |
| 2732232 | NM_002890.3(RASA1):c.496G>T (p.Glu166Ter) | Pathogenic |
| 2746283 | NM_002890.3(RASA1):c.426C>G (p.Tyr142Ter) | Pathogenic |
| 2877034 | NM_002890.3(RASA1):c.434_451delinsA (p.Pro145fs) | Pathogenic |
| 2893369 | NM_002890.3(RASA1):c.402del (p.Pro136fs) | Pathogenic |
| 3246331 | NC_000005.9:g.(?86669960)(86670753_?)del | Pathogenic |
| 3391888 | GRCh37/hg19 5q14.3(chr5:86011540-86616649)x1 | Pathogenic |
| 3659038 | NM_002890.3(RASA1):c.231_232del (p.Ala78fs) | Pathogenic |
| 3660323 | NM_002890.3(RASA1):c.217G>T (p.Gly73Ter) | Pathogenic |
| 4279976 | NM_002890.3(RASA1):c.463G>T (p.Glu155Ter) | Pathogenic |
| 452663 | NM_002890.3(RASA1):c.297del (p.Ala100fs) | Pathogenic |
| 4724217 | NM_002890.3(RASA1):c.117dup (p.Ala40fs) | Pathogenic |
| 503721 | NM_002890.3(RASA1):c.261_262del (p.Gly89fs) | Pathogenic |
| 811221 | NM_002890.3(RASA1):c.431_438del (p.Pro144fs) | Pathogenic |
| 952905 | NM_002890.3(RASA1):c.365C>A (p.Ser122Ter) | Pathogenic |
SpliceAI
4926 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:87268991:G:GG | donor_gain | 1.0000 |
| 5:87331344:CTAG:C | acceptor_loss | 1.0000 |
| 5:87331345:TAGG:T | acceptor_loss | 1.0000 |
| 5:87331346:A:AG | acceptor_gain | 1.0000 |
| 5:87331346:AG:A | acceptor_gain | 1.0000 |
| 5:87331346:AGGT:A | acceptor_gain | 1.0000 |
| 5:87331346:AGGTG:A | acceptor_gain | 1.0000 |
| 5:87331347:G:A | acceptor_gain | 1.0000 |
| 5:87331347:G:GT | acceptor_gain | 1.0000 |
| 5:87331347:GGT:G | acceptor_gain | 1.0000 |
| 5:87331347:GGTG:G | acceptor_gain | 1.0000 |
| 5:87331347:GGTGG:G | acceptor_gain | 1.0000 |
| 5:87331405:G:T | donor_gain | 1.0000 |
| 5:87331499:AGG:A | donor_loss | 1.0000 |
| 5:87331501:G:GG | donor_gain | 1.0000 |
| 5:87331501:GTA:G | donor_loss | 1.0000 |
| 5:87331502:T:A | donor_loss | 1.0000 |
| 5:87332505:A:AG | acceptor_gain | 1.0000 |
| 5:87332506:G:GG | acceptor_gain | 1.0000 |
| 5:87333256:AT:A | acceptor_gain | 1.0000 |
| 5:87333257:T:TA | acceptor_gain | 1.0000 |
| 5:87333265:A:AG | acceptor_gain | 1.0000 |
| 5:87333266:G:GG | acceptor_gain | 1.0000 |
| 5:87333266:GCCA:G | acceptor_gain | 1.0000 |
| 5:87337972:A:AG | acceptor_gain | 1.0000 |
| 5:87337973:G:GG | acceptor_gain | 1.0000 |
| 5:87337973:GTTT:G | acceptor_gain | 1.0000 |
| 5:87338092:G:GA | donor_loss | 1.0000 |
| 5:87338093:TAAGT:T | donor_loss | 1.0000 |
| 5:87341322:G:GG | donor_gain | 1.0000 |
AlphaMissense
6849 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:87331349:T:A | W181R | 1.000 |
| 5:87331349:T:C | W181R | 1.000 |
| 5:87331359:G:A | G184E | 1.000 |
| 5:87331365:T:C | L186P | 1.000 |
| 5:87331371:G:C | R188T | 1.000 |
| 5:87331372:A:C | R188S | 1.000 |
| 5:87331372:A:T | R188S | 1.000 |
| 5:87331389:G:C | R194P | 1.000 |
| 5:87331392:T:A | L195H | 1.000 |
| 5:87331392:T:C | L195P | 1.000 |
| 5:87331418:T:G | Y204D | 1.000 |
| 5:87331422:T:A | L205H | 1.000 |
| 5:87331422:T:C | L205P | 1.000 |
| 5:87331425:T:A | I206K | 1.000 |
| 5:87331428:G:C | R207T | 1.000 |
| 5:87331428:G:T | R207I | 1.000 |
| 5:87331429:A:C | R207S | 1.000 |
| 5:87331429:A:T | R207S | 1.000 |
| 5:87331461:T:A | L218H | 1.000 |
| 5:87331461:T:C | L218P | 1.000 |
| 5:87331461:T:G | L218R | 1.000 |
| 5:87331463:T:C | S219P | 1.000 |
| 5:87331493:C:G | H229D | 1.000 |
| 5:87331495:T:A | H229Q | 1.000 |
| 5:87331495:T:G | H229Q | 1.000 |
| 5:87331496:T:C | F230L | 1.000 |
| 5:87331497:T:C | F230S | 1.000 |
| 5:87331498:T:A | F230L | 1.000 |
| 5:87331498:T:G | F230L | 1.000 |
| 5:87331500:G:T | R231M | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000035296 (5:87332782 A>G,T), RS1000081869 (5:87267702 A>C,G), RS1000119777 (5:87347379 G>A,T), RS1000123902 (5:87314405 G>A,C), RS1000125560 (5:87378098 T>G), RS1000128628 (5:87302530 T>C,G), RS1000139410 (5:87331770 A>C,T), RS1000158306 (5:87323455 G>A,C), RS1000192507 (5:87351682 CCTGA>C), RS1000224192 (5:87374351 T>C), RS1000324352 (5:87357887 T>C), RS1000359888 (5:87333855 C>G), RS1000359906 (5:87271216 C>T), RS1000386220 (5:87285158 C>T), RS1000412441 (5:87318675 C>G,T)
Disease associations
OMIM: gene MIM:139150 | disease phenotypes: MIM:605462, MIM:608354, MIM:608355, MIM:123880
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| capillary malformation-arteriovenous malformation 1 | Definitive | Autosomal dominant |
| capillary malformation-arteriovenous malformation syndrome | Supportive | Autosomal dominant |
| Parkes Weber syndrome | Supportive | Autosomal dominant |
| Noonan syndrome | Disputed Evidence | Autosomal dominant |
| telangiectasia, hereditary hemorrhagic, type 1 | No Known Disease Relationship | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Noonan syndrome | Disputed | AD |
Mondo (7): basal cell carcinoma, susceptibility to, 1 (MONDO:0011556), capillary malformation-arteriovenous malformation syndrome (MONDO:0012016), capillary malformation-arteriovenous malformation 1 (MONDO:0020783), Gorham-Stout disease (MONDO:0007414), Noonan syndrome (MONDO:0018997), telangiectasia, hereditary hemorrhagic, type 1 (MONDO:0008535), (MONDO:0012017)
Orphanet (4): Capillary malformation-arteriovenous malformation (Orphanet:137667), RASA1-related capillary malformation-arteriovenous malformation (Orphanet:693907), Gorham-Stout disease (Orphanet:73), Parkes Weber syndrome (Orphanet:90307)
HPO phenotypes
47 total (30 of 47 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000016 | Urinary retention |
| HP:0000079 | Abnormality of the urinary system |
| HP:0000100 | Nephrotic syndrome |
| HP:0001722 | High-output congestive heart failure |
| HP:0001892 | Abnormal bleeding |
| HP:0002138 | Subarachnoid hemorrhage |
| HP:0002196 | Myelopathy |
| HP:0002315 | Headache |
| HP:0002390 | Spinal arteriovenous malformation |
| HP:0002408 | Cerebral arteriovenous malformation |
| HP:0002617 | Vascular dilatation |
| HP:0002619 | Varicose veins |
| HP:0002671 | Basal cell carcinoma |
| HP:0002814 | Abnormality of the lower limb |
| HP:0002817 | Abnormality of the upper limb |
| HP:0002936 | Distal sensory impairment |
| HP:0003418 | Back pain |
| HP:0003474 | Somatic sensory dysfunction |
| HP:0004947 | Arteriovenous fistula |
| HP:0004948 | Vascular tortuosity |
| HP:0005306 | Capillary hemangioma |
| HP:0005521 | Disseminated intravascular coagulation |
| HP:0006489 | Abnormal femoral metaphysis morphology |
| HP:0007340 | Lower limb muscle weakness |
| HP:0007394 | Prominent superficial blood vessels |
| HP:0007461 | Hemangiomatosis |
| HP:0008968 | Muscle hypertrophy of the lower extremities |
| HP:0010484 | Hypertrophy of the upper limb |
| HP:0010550 | Paraplegia |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000922_1 | Openness | 2.000000e-06 |
| GCST001850_35 | Major depressive disorder | 4.000000e-06 |
| GCST002886_1 | Prostate cancer aggressiveness | 6.000000e-09 |
| GCST006976_58 | Macular thickness | 4.000000e-10 |
| GCST007576_417 | Chronotype | 5.000000e-10 |
| GCST007576_47 | Chronotype | 4.000000e-11 |
| GCST009379_40 | Type 2 diabetes | 2.000000e-08 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007914 | openness measurement |
| EFO:0006999 | cancer aggressiveness measurement |
| EFO:0007000 | Gleason score measurement |
| EFO:0008328 | chronotype measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009634 | Noonan Syndrome | C05.660.207.690; C14.240.400.787; C14.280.400.787; C16.131.240.400.784; C16.131.621.207.690; C17.300.690 |
| C564254 | Capillary Malformation-Arteriovenous Malformation (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| RASA1 Loss-of-function | Trametinib | Lung Non-small Cell Carcinoma | Sensitivity/Response | CIViC D | EID5994 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
61 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol F | affects cotreatment, decreases expression, increases expression | 2 |
| bisphenol A | affects cotreatment, decreases methylation, increases expression | 2 |
| Benzo(a)pyrene | decreases expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| taxifolin | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment, affects localization, decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases expression, affects response to substance, increases expression, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| rofecoxib | affects expression | 1 |
| CP 31398 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| asparanin A | decreases expression | 1 |
| jinfukang | decreases expression, increases reaction | 1 |
| 7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-one | decreases expression | 1 |
| Irinotecan | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Aerosols | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | increases methylation | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2II | HAP1 RASA1 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
39 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02389959 | PHASE4 | COMPLETED | Intranasal Bevacizumab for HHT-Related Epistaxis |
| NCT04999618 | PHASE4 | COMPLETED | A New Approach in Laser Surgery Using the Regenerative Solution in Children Diagnosed With Vascular Pathology |
| NCT00452725 | PHASE3 | COMPLETED | Effect of MAXOMAT ® on the Growth of Small Children to NOONAN’s Syndrome |
| NCT01529840 | PHASE3 | COMPLETED | Somatropin Effect on Linear Growth and Final Height in Subjects With Noonan Syndrome |
| NCT01529944 | PHASE3 | COMPLETED | Genetic Testing of Noonan Subjects Previously Treated With Norditropin®. An Extension to Trial GHNOO-1658 |
| NCT01927861 | PHASE3 | COMPLETED | Investigating the Long-term Efficacy and Safety of Two Doses of NN-220 (Somatropin) in Short Stature Due to Noonan Syndrome |
| NCT02713945 | PHASE3 | COMPLETED | Treatment With HMG-COA Reductase Inhibitor of Growth and Bone Abnormalities in Children With Noonan Syndrome |
| NCT05723835 | PHASE3 | ACTIVE_NOT_RECRUITING | A Research Study Looking at How Safe Somapacitan is and How Well it Works in Children Who Need Help to Grow - REAL 9 |
| NCT00351221 | PHASE2 | TERMINATED | Research Study Using Recombinant Human Insulin-Like Growth Factor-1/Recombinant Human Insulin-Like Growth Factor Binding Protein-3 for Children With Noonan Syndrome |
| NCT06555237 | PHASE2 | RECRUITING | MEK Inhibitors for the Treatment of Hypertrophic Cardiomyopathy in Patients With RASopathies |
| NCT06668805 | PHASE2 | RECRUITING | A Study of Vosoritide in Children With Noonan Syndrome With Inadequate Growth During or After Human Growth Hormone Treatment |
| NCT01314274 | PHASE2 | COMPLETED | Intranasal Submucosal Bevacizumab for Epistaxis in Hereditary Hemorrhagic Telangiectasia (HHT) |
| NCT00960128 | Not specified | COMPLETED | Observational Prospective Study on Patients Treated With Norditropin® |
| NCT02486731 | Not specified | COMPLETED | Hormonal Sensitivity in Patients With Noonan and LEOPARD Syndromes |
| NCT03435627 | Not specified | COMPLETED | Post Marketing Surveillance on Long-term Use With Norditropin® (Short Stature Due to Noonan Syndrome) |
| NCT04395495 | Not specified | RECRUITING | RASopathy Biorepository |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT04888936 | Not specified | RECRUITING | Clinical, Genetic, and Epidemiologic Study of Children and Adults With RASopathies |
| NCT05202210 | Not specified | RECRUITING | Constitution of a Biological Collection to Study the Pathophysiology in Noonan Syndrome |
| NCT05308927 | Not specified | ENROLLING_BY_INVITATION | French Registry of Children Treated With Norditropin® for Short Stature Associated With Noonan Syndrome |
| NCT05361811 | Not specified | RECRUITING | Acceptance and Commitment Therapy for Caregivers of Children With a RASopathy: An Internal Pilot Feasibility Study and Follow-up Randomized Controlled Trial |
| NCT05761314 | Not specified | RECRUITING | Solid Tumors in RASopathies |
| NCT06267807 | Not specified | COMPLETED | Lymphatic Phenotype in Noonan Syndrome Spectrum Disorders |
| NCT06331117 | Not specified | UNKNOWN | Effect of RAS/MAPK Pathway Hyperactivation on Growth’ and Bone’ Profile of the RASopathies |
| NCT06355622 | Not specified | UNKNOWN | Prevalence and Characterization of Pain in RASopathies |
| NCT06550635 | Not specified | COMPLETED | Joint and Hematologic Disorders of Noonan Syndrome: French Descriptive Cross-sectional Study |
| NCT06938542 | Not specified | ENROLLING_BY_INVITATION | Palliative Care Needs of Children With Rare Diseases and Their Families |
| NCT07259135 | Not specified | NOT_YET_RECRUITING | Link Between Abnormal Bleeding and Coagulation Disorders in Noonan Syndromes |
| NCT07336394 | Not specified | RECRUITING | Precision Diagnosis and Risk Stratification of Rare Cardiomyopathies Based on Novel Cardiac Magnetic Resonance Techniques |
| NCT07464821 | Not specified | RECRUITING | National Multicentre Study on Lipid Profile in Noonan Syndrome and Related Disorders: Trends by Age, Gender and Genotype |
| NCT03850964 | PHASE2/PHASE3 | ACTIVE_NOT_RECRUITING | Effects of Pazopanib on Hereditary Hemorrhagic Telangiectasia Related Epistaxis and Anemia (Paz) |
| NCT04150822 | Not specified | ACTIVE_NOT_RECRUITING | CHORUS - Comprehensive HHT Outcomes Registry of the United States (Formerly OUR HHT Registry) |
| NCT05550376 | Not specified | COMPLETED | Genotype-phenotype Association in Hereditary Hemorrhagic Telangiectasia |
| NCT06039124 | Not specified | COMPLETED | Subsequent Bevacizumab Treatment in Patients With HHT. Follow up BABH |
| NCT06266624 | Not specified | ACTIVE_NOT_RECRUITING | Tourniquet-Test in HHT |
| NCT06573723 | Not specified | RECRUITING | Institutional Registry of Rare Diseases |
| NCT02399527 | Not specified | RECRUITING | Lymphatic Anomalies Registry for the Assessment of Outcome Data |
| NCT02744027 | Not specified | COMPLETED | Imaging of Lymphatic Anomalies |
| NCT03001180 | Not specified | RECRUITING | Identification of Biomarkers for Patients with Vascular Anomalies |
Related Atlas pages
- Associated diseases: capillary malformation-arteriovenous malformation 1, Noonan syndrome, telangiectasia, hereditary hemorrhagic, type 1, capillary malformation-arteriovenous malformation syndrome, Parkes Weber syndrome
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Trametinib
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): basal cell carcinoma, susceptibility to, 1, capillary malformation-arteriovenous malformation 1, capillary malformation-arteriovenous malformation syndrome, Gorham-Stout disease, non-small cell lung carcinoma, Noonan syndrome, telangiectasia, hereditary hemorrhagic, type 1