RASA2-IT1

Summary

RASA2-IT1 (RASA2 intronic transcript 1, HGNC:41376) is a long non-coding RNA gene on chromosome 3q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41376
Approved symbol	RASA2-IT1
Name	RASA2 intronic transcript 1
Location	3q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250170
Ensembl biotype	lncRNA
Entrez	100874298
RNAcentral	URS00005E5CA1 — lncRNA, 612 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000507770

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507770 — 2 exons

Exon	Start	End
ENSE00002049467	141525133	141525356
ENSE00002060796	141525734	141526121

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 85.49.

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.49	gold quality
colonic epithelium	UBERON:0000397	78.19	gold quality
bone marrow cell	CL:0002092	72.35	gold quality
sural nerve	UBERON:0015488	71.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.62	gold quality
bone marrow	UBERON:0002371	65.76	gold quality
ganglionic eminence	UBERON:0004023	64.00	gold quality
ventricular zone	UBERON:0003053	63.89	gold quality
skeletal muscle tissue	UBERON:0001134	63.34	silver quality
cortical plate	UBERON:0005343	62.98	gold quality
tonsil	UBERON:0002372	62.24	gold quality
urinary bladder	UBERON:0001255	59.69	silver quality
placenta	UBERON:0001987	59.01	gold quality
blood	UBERON:0000178	58.23	gold quality
vermiform appendix	UBERON:0001154	57.82	gold quality
monocyte	CL:0000576	56.59	gold quality
kidney	UBERON:0002113	56.53	gold quality
calcaneal tendon	UBERON:0003701	55.26	gold quality
liver	UBERON:0002107	54.41	gold quality
uterine cervix	UBERON:0000002	54.10	gold quality
cortex of kidney	UBERON:0001225	53.54	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	53.42	gold quality
lung	UBERON:0002048	52.66	gold quality
lymph node	UBERON:0000029	52.61	gold quality
endometrium	UBERON:0001295	51.72	silver quality
islet of Langerhans	UBERON:0000006	51.71	gold quality
myometrium	UBERON:0001296	51.39	gold quality
gall bladder	UBERON:0002110	50.17	gold quality
muscle of leg	UBERON:0001383	50.11	gold quality
duodenum	UBERON:0002114	50.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.03

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.