RASA3-IT1

Summary

RASA3-IT1 (RASA3 intronic transcript 1, HGNC:39938) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39938
Approved symbol	RASA3-IT1
Name	RASA3 intronic transcript 1
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232487
Ensembl biotype	lncRNA
Entrez	100874321
RNAcentral	URS00021231E9 — lncRNA, 2594 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000454005

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000454005 — 2 exons

Exon	Start	End
ENSE00001711640	114108641	114108820
ENSE00001733312	114107569	114107768

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 86.22.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.22	gold quality
bone marrow cell	CL:0002092	78.59	gold quality
sural nerve	UBERON:0015488	76.07	gold quality
bone marrow	UBERON:0002371	71.08	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.62	gold quality
gall bladder	UBERON:0002110	67.21	gold quality
blood	UBERON:0000178	65.73	gold quality
pituitary gland	UBERON:0000007	65.46	gold quality
adenohypophysis	UBERON:0002196	63.55	gold quality
skeletal muscle tissue	UBERON:0001134	63.38	gold quality
tonsil	UBERON:0002372	62.09	gold quality
prefrontal cortex	UBERON:0000451	62.00	gold quality
smooth muscle tissue	UBERON:0001135	61.48	gold quality
granulocyte	CL:0000094	61.25	gold quality
cortex of kidney	UBERON:0001225	60.97	gold quality
vermiform appendix	UBERON:0001154	60.96	gold quality
monocyte	CL:0000576	60.94	gold quality
leukocyte	CL:0000738	60.67	gold quality
lymph node	UBERON:0000029	60.61	gold quality
superior frontal gyrus	UBERON:0002661	60.05	gold quality
Ammon’s horn	UBERON:0001954	59.99	gold quality
corpus callosum	UBERON:0002336	59.78	gold quality
amygdala	UBERON:0001876	59.25	gold quality
substantia nigra	UBERON:0002038	59.15	gold quality
frontal cortex	UBERON:0001870	59.04	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.11	gold quality
cerebral cortex	UBERON:0000956	58.07	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.88	gold quality
muscle of leg	UBERON:0001383	57.78	gold quality
duodenum	UBERON:0002114	57.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.