RASL11B

gene
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Summary

RASL11B (RAS like family 11 member B, HGNC:23804) is a protein-coding gene on chromosome 4q12, encoding Ras-like protein family member 11B (Q9BPW5).

Predicted to enable G protein activity; GTP binding activity; and transforming growth factor beta receptor binding activity. Predicted to act upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway.

Source: NCBI Gene 65997 — RefSeq curated summary.

At a glance

  • GWAS associations: 7
  • Clinical variants (ClinVar): 30 total
  • MANE Select transcript: NM_023940

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:23804
Approved symbolRASL11B
NameRAS like family 11 member B
Location4q12
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000128045
Ensembl biotypeprotein_coding
OMIM612404
Entrez65997

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 1 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron

ENST00000248706, ENST00000505041, ENST00000515677

RefSeq mRNA: 1 — MANE Select: NM_023940 NM_023940

CCDS: CCDS3490

Canonical transcript exons

ENST00000248706 — 4 exons

ExonStartEnd
ENSE000009168505286326852863324
ENSE000009693615286231752862649
ENSE000009693625286533552866835
ENSE000035708245286447852864554

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 93.20.

FANTOM5 (CAGE): breadth broad, TPM avg 2.4599 / max 96.1561, expressed in 538 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
476142.4599538

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right ovaryUBERON:000211893.20gold quality
left ovaryUBERON:000211992.90gold quality
metanephros cortexUBERON:001053389.30gold quality
cortical plateUBERON:000534388.59gold quality
spleenUBERON:000210686.24gold quality
cerebellar hemisphereUBERON:000224584.63gold quality
cerebellar cortexUBERON:000212984.55gold quality
right hemisphere of cerebellumUBERON:001489084.46gold quality
ovaryUBERON:000099284.39gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047384.16gold quality
right coronary arteryUBERON:000162584.12gold quality
ganglionic eminenceUBERON:000402383.74gold quality
embryoUBERON:000092283.73gold quality
stromal cell of endometriumCL:000225583.41gold quality
prefrontal cortexUBERON:000045183.22gold quality
Brodmann (1909) area 9UBERON:001354083.17gold quality
left coronary arteryUBERON:000162682.98gold quality
cerebellumUBERON:000203782.21gold quality
popliteal arteryUBERON:000225081.99gold quality
tibial arteryUBERON:000761081.97gold quality
right frontal lobeUBERON:000281081.75gold quality
apex of heartUBERON:000209881.57gold quality
buccal mucosa cellCL:000233681.16gold quality
coronary arteryUBERON:000162180.77gold quality
right atrium auricular regionUBERON:000663180.24gold quality
aortaUBERON:000094780.17gold quality
cardiac atriumUBERON:000208179.23gold quality
descending thoracic aortaUBERON:000234578.51gold quality
thoracic aortaUBERON:000151578.29gold quality
adult mammalian kidneyUBERON:000008278.25gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-HCAD-5yes18.95
E-ANND-3yes13.18

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): GLI1

miRNA regulators (miRDB)

75 targeting RASL11B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-493-5P99.9672.472382
HSA-MIR-211099.9666.681930
HSA-LET-7C-3P99.9573.422862
HSA-MIR-311999.9271.342390
HSA-MIR-106A-5P99.9073.942683
HSA-MIR-368699.9070.532432
HSA-MIR-17-5P99.8973.832665
HSA-MIR-6783-3P99.8967.922059
HSA-MIR-1343-3P99.8966.781815
HSA-MIR-106B-5P99.8874.722795
HSA-MIR-20A-5P99.8874.762769
HSA-MIR-20B-5P99.8874.012621
HSA-MIR-519D-3P99.8873.972607
HSA-MIR-526B-3P99.8874.062587
HSA-MIR-93-5P99.8873.982606
HSA-LET-7A-2-3P99.8770.531921
HSA-MIR-612499.8769.783551
HSA-LET-7G-3P99.8570.431929
HSA-MIR-205-5P99.8170.051557
HSA-MIR-4668-5P99.7970.583782
HSA-MIR-129999.7771.242389
HSA-MIR-6794-5P99.7666.381048
HSA-MIR-3156-3P99.7666.72939
HSA-MIR-425599.7267.701541
HSA-MIR-4716-3P99.6966.731022
HSA-MIR-519A-3P99.6771.671868
HSA-MIR-519B-3P99.6771.671868
HSA-MIR-519C-3P99.6771.671870
HSA-MIR-875-3P99.6369.472548

Literature-anchored findings (GeneRIF, showing 4)

  • RASL11B gene is expressed in all tissues investigated, with highest levels in placenta & primary macrophages. RASL11B may play a role in TGF-beta1-mediated developmental processes & in pathophysiologies such as inflammation, cancer, and arteriosclerosis. (PMID:17628721)
  • MEG3 could up-regulate RASL11B to inhibit the cell proliferation, invasion, and migration; induce G0/G1 cell cycle arrest; and promote cell apoptosis by suppressing miR-7 in clear cell renal cell carcinoma. (PMID:29968912)
  • the present study identified a novel significant association between the increased expression levels of MAPK10, TUBB2B and RASL11B, and neuroblastoma cells. (PMID:31432180)
  • RASL11B gene enhances hyaluronic acid-mediated chondrogenic differentiation in human amniotic mesenchymal stem cells via the activation of Sox9/ERK/smad signals. (PMID:32878463)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriorasl11bENSDARG00000015611
mus_musculusRasl11bENSMUSG00000049907
rattus_norvegicusRasl11bENSRNOG00000002097

Paralogs (35): RALA (ENSG00000006451), REM1 (ENSG00000088320), RASL10A (ENSG00000100276), RASD2 (ENSG00000100302), RASL12 (ENSG00000103710), RHEB (ENSG00000106615), RASD1 (ENSG00000108551), RERGL (ENSG00000111404), RAP1A (ENSG00000116473), RASL11A (ENSG00000122035), RAP2C (ENSG00000123728), RAP2A (ENSG00000125249), RRAS (ENSG00000126458), RAP1B (ENSG00000127314), KRAS (ENSG00000133703), RRAS2 (ENSG00000133818), RERG (ENSG00000134533), REM2 (ENSG00000139890), RIT1 (ENSG00000143622), RALB (ENSG00000144118), RIT2 (ENSG00000152214), MRAS (ENSG00000158186), DIRAS3 (ENSG00000162595), GEM (ENSG00000164949), DIRAS2 (ENSG00000165023), RRAD (ENSG00000166592), RHEBL1 (ENSG00000167550), NKIRAS2 (ENSG00000168256), HRAS (ENSG00000174775), DIRAS1 (ENSG00000176490), RAP2B (ENSG00000181467), ERAS (ENSG00000187682), NKIRAS1 (ENSG00000197885), NRAS (ENSG00000213281), RASL10B (ENSG00000270885)

Protein

Protein identifiers

Ras-like protein family member 11BQ9BPW5 (reviewed: Q9BPW5)

All UniProt accessions (1): Q9BPW5

UniProt curated annotations — full annotation on UniProt →

Tissue specificity. Widely expressed with highest levels in placenta and primary macrophages.

Induction. By TGFB1.

Similarity. Belongs to the small GTPase superfamily. Ras family.

RefSeq proteins (1): NP_076429* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001806Small_GTPaseFamily
IPR005225Small_GTP-bdDomain
IPR027417P-loop_NTPaseHomologous_superfamily
IPR051065Ras-related_GTPaseFamily

Pfam: PF00071

Catalyzed reactions (Rhea), 1 shown:

  • GTP + H2O = GDP + phosphate + H(+) (RHEA:19669)

UniProt features (8 total): binding site 3, region of interest 2, sequence conflict 2, chain 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9BPW5-F179.690.52

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (3): 40–47; 87–94; 152–155

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 182 (showing top): SHEPARD_BMYB_MORPHOLINO_UP, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, TGCACTT_MIR519C_MIR519B_MIR519A, SHEPARD_CRASH_AND_BURN_MUTANT_UP, GGGTGGRR_PAX4_03, MARTINEZ_RB1_TARGETS_UP, MUELLER_PLURINET, GERY_CEBP_TARGETS, GOBP_REGULATION_OF_TRANSMEMBRANE_RECEPTOR_PROTEIN_SERINE_THREONINE_KINASE_SIGNALING_PATHWAY, YY1_02, GOBP_RESPONSE_TO_TRANSFORMING_GROWTH_FACTOR_BETA, SCHAEFFER_PROSTATE_DEVELOPMENT_12HR_UP, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, TGANTCA_AP1_C

GO Biological Process (1): negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512)

GO Molecular Function (7): G protein activity (GO:0003925), transforming growth factor beta receptor binding (GO:0005160), GTP binding (GO:0005525), nucleotide binding (GO:0000166), GTPase activity (GO:0003924), protein binding (GO:0005515), hydrolase activity (GO:0016787)

GO Cellular Component (0):

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
transforming growth factor beta receptor signaling pathway1
regulation of transforming growth factor beta receptor signaling pathway1
negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway1
GTPase activity1
molecular function regulator activity1
cytokine receptor binding1
guanyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
nucleoside phosphate binding1
heterocyclic compound binding1
ribonucleoside triphosphate phosphatase activity1
binding1
catalytic activity1

Protein interactions and networks

STRING

1792 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
RASL11BARL9Q6T311851
RASL11BTGFB1P01137481
RASL11BSYDE2Q5VT97470
RASL11BCCDC125Q86Z20454
RASL11BARRDC2Q8TBH0443
RASL11BRFT1Q96AA3431
RASL11BCNKSR1Q969H4423
RASL11BRHOFQ9HBH0410
RASL11BRASSF1Q9NS23380
RASL11BPOLR2BP30876377
RASL11BDEPDC7Q96QD5376
RASL11BGTPBP4Q9BZE4372
RASL11BSLC35E3Q7Z769369
RASL11BABHD12BQ7Z5M8367
RASL11BLRRC25Q8N386364
RASL11BSPEF1Q9Y4P9364

IntAct

128 interactions, top by confidence:

ABTypeScore
MAGI1RASL11Bpsi-mi:“MI:0915”(physical association)0.560
GEMIN6RASL11Bpsi-mi:“MI:0915”(physical association)0.560
RASL11BMAGI2psi-mi:“MI:0407”(direct interaction)0.440
RASL11BMAGI3psi-mi:“MI:0407”(direct interaction)0.440
RASL11BMAGI1psi-mi:“MI:0407”(direct interaction)0.440
RASL11BMAST2psi-mi:“MI:0407”(direct interaction)0.440
RASL11BDLG1psi-mi:“MI:0407”(direct interaction)0.440
RASL11BDLG4psi-mi:“MI:0407”(direct interaction)0.440
RASL11BDLG2psi-mi:“MI:0407”(direct interaction)0.440
RASL11BSYNJ2BPpsi-mi:“MI:0407”(direct interaction)0.440
RASL11BLNX2psi-mi:“MI:0407”(direct interaction)0.440
RASL11BDLG3psi-mi:“MI:0407”(direct interaction)0.440
RASL11BMAST1psi-mi:“MI:0407”(direct interaction)0.440
RASL11BSNX27psi-mi:“MI:0407”(direct interaction)0.440
RASL11BPDZD7psi-mi:“MI:0407”(direct interaction)0.440
RASL11BARHGEF12psi-mi:“MI:0407”(direct interaction)0.440
RASL11BPTPN3psi-mi:“MI:0407”(direct interaction)0.440
RASL11BGORASP2psi-mi:“MI:0407”(direct interaction)0.440
DLG1RASL11Bpsi-mi:“MI:0407”(direct interaction)0.440
TAMALINRASL11Bpsi-mi:“MI:0407”(direct interaction)0.440
RASL11BTAX1BP3psi-mi:“MI:0407”(direct interaction)0.440
ARHGEF11RASL11Bpsi-mi:“MI:0407”(direct interaction)0.440
RASL11BPATJpsi-mi:“MI:0407”(direct interaction)0.440
RASL11BSCRIBpsi-mi:“MI:0407”(direct interaction)0.440
RASL11BPDZD2psi-mi:“MI:0407”(direct interaction)0.440

BioGRID (21): RASL11B (Two-hybrid), RASL11B (Reconstituted Complex), RASL11B (Reconstituted Complex), MAGI1 (Two-hybrid), GEMIN6 (Two-hybrid), LTF (Affinity Capture-MS), PPM1B (Affinity Capture-MS), PPM1A (Affinity Capture-MS), RAP1GDS1 (Affinity Capture-MS), BPIFA1 (Affinity Capture-MS), MUC5AC (Affinity Capture-MS), SCGB2A1 (Affinity Capture-MS), BPIFB1 (Affinity Capture-MS), RASL11B (Proximity Label-MS), RASL11B (Proximity Label-MS)

ESM2 similar proteins: A1DZY4, A6QP66, O35626, O35929, O88910, O88954, P0C0E4, P35295, P51157, P51158, P53667, P53668, P53669, P55040, P55041, P55043, P63032, P63033, Q06AU5, Q12829, Q13368, Q13637, Q3SWY9, Q5E9J3, Q5FVY2, Q5R541, Q5RFI2, Q6DGN0, Q6IMA3, Q6IMA7, Q6IMB1, Q6P0U3, Q6T310, Q8AVS6, Q8IYK8, Q8QFP8, Q8VEL9, Q8VHP8, Q8VHQ4, Q8WXH6

Diamond homologs: A1DZY4, A6QP66, A8NU18, C4YKT4, O08989, O14807, O35929, O88667, O93856, O94363, P01119, P03967, P08645, P08647, P0CY32, P10114, P10536, P11233, P11234, P15064, P17609, P22124, P22126, P22278, P22279, P22280, P28775, P32254, P36860, P36863, P48555, P59279, P61105, P61225, P61226, P61227, P62070, P62071, P63320, P63321

SIGNOR signaling

0 interactions.

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 79 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Ras activation upon Ca2+ influx through NMDA receptor557.1×8e-07
Unblocking of NMDA receptors, glutamate binding and activation554.4×8e-07
Negative regulation of NMDA receptor-mediated neuronal transmission554.4×8e-07
Assembly and cell surface presentation of NMDA receptors1050.8×3e-13
Dopamine Neurotransmitter Release Cycle549.6×1e-06
Long-term potentiation547.6×1e-06
Neurexins and neuroligins1143.3×1e-13
Protein-protein interactions at synapses737.2×4e-08

GO biological processes:

GO termPartnersFoldFDR
establishment or maintenance of epithelial cell apical/basal polarity1076.5×2e-14
protein localization to synapse660.5×8e-08
receptor clustering757.5×6e-09
regulation of postsynaptic membrane neurotransmitter receptor levels639.1×7e-07
protein-containing complex assembly913.5×1e-06
cell-cell adhesion1013.4×3e-07
regulation of small GTPase mediated signal transduction59.5×3e-03
protein localization to plasma membrane57.2×9e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

30 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance28
Likely benign1
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

337 predictions. Top by Δscore:

VariantEffectΔscore
4:52862645:GACCG:Gdonor_gain1.0000
4:52862647:CCG:Cdonor_gain1.0000
4:52862650:G:GGdonor_gain1.0000
4:52862651:T:Gdonor_loss1.0000
4:52863258:T:Aacceptor_gain1.0000
4:52863261:C:Aacceptor_gain1.0000
4:52863262:GTGCA:Gacceptor_loss1.0000
4:52863263:T:TAacceptor_gain1.0000
4:52863263:TGCA:Tacceptor_loss1.0000
4:52863264:GCA:Gacceptor_loss1.0000
4:52863265:CAGCA:Cacceptor_loss1.0000
4:52863266:A:AGacceptor_gain1.0000
4:52863266:A:Cacceptor_loss1.0000
4:52863267:G:Aacceptor_loss1.0000
4:52863267:G:GAacceptor_gain1.0000
4:52863267:GC:Gacceptor_gain1.0000
4:52863267:GCA:Gacceptor_gain1.0000
4:52863267:GCAC:Gacceptor_gain1.0000
4:52863267:GCACT:Gacceptor_gain1.0000
4:52863322:CAGG:Cdonor_loss1.0000
4:52863323:AGG:Adonor_loss1.0000
4:52863324:GGTG:Gdonor_loss1.0000
4:52863325:GTGA:Gdonor_loss1.0000
4:52863326:T:Adonor_loss1.0000
4:52864476:AGG:Aacceptor_loss1.0000
4:52864477:GGTA:Gacceptor_gain1.0000
4:52865329:TTTCA:Tacceptor_loss1.0000
4:52865333:A:AGacceptor_gain1.0000
4:52865333:AGG:Aacceptor_loss1.0000
4:52865334:G:GCacceptor_gain1.0000

AlphaMissense

1622 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
4:52862647:C:TT47I1.000
4:52863297:T:CF58L1.000
4:52863299:C:AF58L1.000
4:52863299:C:GF58L1.000
4:52865516:A:TK153I1.000
4:52865517:A:CK153N1.000
4:52865517:A:TK153N1.000
4:52865525:T:CL156P1.000
4:52862625:G:CG40R0.999
4:52862640:G:CG45R0.999
4:52862641:G:AG45D0.999
4:52862641:G:TG45V0.999
4:52863280:G:CR52P0.999
4:52863289:C:TT55I0.999
4:52863295:G:CR57P0.999
4:52863298:T:CF58S0.999
4:52863298:T:GF58C0.999
4:52864532:T:AV85D0.999
4:52865395:G:CA113P0.999
4:52865413:T:CS119P0.999
4:52865431:A:CS125R0.999
4:52865433:C:AS125R0.999
4:52865433:C:GS125R0.999
4:52865522:A:CD155A0.999
4:52865522:A:GD155G0.999
4:52865603:C:TS182F0.999
4:52862617:C:AA37D0.998
4:52862626:G:AG40D0.998
4:52862640:G:TG45C0.998
4:52862644:A:TK46M0.998

dbSNP variants (sampled 300 via entrez): RS1000144761 (4:52862193 G>C,T), RS1000512547 (4:52864301 G>A,T), RS1000515006 (4:52862230 G>A), RS1001113898 (4:52861630 C>G,T), RS1001172840 (4:52862124 T>A,C,G), RS1001292166 (4:52862201 C>A,G,T), RS1001339249 (4:52867214 C>T), RS1001342112 (4:52861960 C>A), RS1002179913 (4:52862799 C>A), RS1002274285 (4:52860985 C>G), RS1002347793 (4:52860729 GGAAA>G), RS1002848056 (4:52861170 C>G), RS1002962628 (4:52861383 G>A,C), RS1004677938 (4:52864714 G>A), RS1004685817 (4:52866601 G>A)

Disease associations

OMIM: gene MIM:612404 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

7 associations (top):

StudyTraitp-value
GCST003811_5Response to citalopram or escitalopram and depression8.000000e-07
GCST009391_395Metabolite levels9.000000e-06
GCST009545_4Moderate or severe prolonged lymphopenia in dimethyl fumarate-treated relapsing-remitting multiple sclerosis3.000000e-06
GCST010699_75Brain morphology (min-P)3.000000e-18
GCST010701_71Cortical surface area (MOSTest)2.000000e-09
GCST010702_63Subcortical volume (MOSTest)8.000000e-12
GCST010703_102Brain morphology (MOSTest)6.000000e-21

EFO canonical traits (2, from GWAS)

EFO IDTrait name
EFO:0010437triacylglycerol 58:10 measurement
EFO:0004346neuroimaging measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

45 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, increases expression, affects expression7
Benzo(a)pyreneaffects methylation, decreases expression, increases methylation3
entinostatincreases expression, affects cotreatment2
Vorinostataffects cotreatment, increases expression2
Calcitrioldecreases expression, affects cotreatment2
Ethinyl Estradioldecreases expression, affects expression2
Phenylmercuric Acetateincreases expression, affects cotreatment2
methylmercuric chlorideincreases expression1
bisphenol Aincreases methylation, affects cotreatment1
lead acetateincreases expression1
sodium arsenateincreases abundance, increases expression1
2-methyl-4-isothiazolin-3-oneincreases expression1
trichostatin Aincreases expression1
arseniteincreases methylation1
sodium arsenitedecreases expression1
butyraldehydeincreases expression1
ferrous chloridedecreases expression1
2,3-bis(3’-hydroxybenzyl)butyrolactoneaffects cotreatment, decreases expression1
M-VAC protocolincreases response to substance1
beta-methylcholineaffects expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
dorsomorphinaffects cotreatment, increases expression1
Decitabineaffects expression1
Sunitinibincreases expression1
Zoledronic Aciddecreases expression1
Fulvestrantaffects cotreatment, increases methylation1
Arsenicincreases abundance, increases expression1
Cadmiumincreases abundance, increases expression1
Cisplatinaffects expression1
Copperaffects binding, decreases expression1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): lymphopenia, mood disorder