RBBP9
gene geneOn this page
Also known as Bog
Summary
RBBP9 (RB binding protein 9, serine hydrolase, HGNC:9892) is a protein-coding gene on chromosome 20p11.23, encoding Serine hydrolase RBBP9 (O75884). Serine hydrolase.
The protein encoded by this gene is a retinoblastoma binding protein that may play a role in the regulation of cell proliferation and differentiation. Two alternatively spliced transcript variants of this gene with identical predicted protein products have been reported, one of which is a nonsense-mediated decay candidate.
Source: NCBI Gene 10741 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 40 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_006606
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9892 |
| Approved symbol | RBBP9 |
| Name | RB binding protein 9, serine hydrolase |
| Location | 20p11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Bog |
| Ensembl gene | ENSG00000089050 |
| Ensembl biotype | protein_coding |
| OMIM | 602908 |
| Entrez | 10741 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 2 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000337227, ENST00000491835, ENST00000493184, ENST00000966865
RefSeq mRNA: 1 — MANE Select: NM_006606
NM_006606
CCDS: CCDS13136
Canonical transcript exons
ENST00000337227 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000859319 | 18495838 | 18495880 |
| ENSE00001252529 | 18497069 | 18497225 |
| ENSE00001342801 | 18486540 | 18489990 |
| ENSE00003633213 | 18490395 | 18490480 |
| ENSE00003651681 | 18493958 | 18494063 |
Expression profiles
Bgee: expression breadth ubiquitous, 257 present calls, max score 88.18.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.5671 / max 133.6934, expressed in 1755 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 186543 | 11.2775 | 1735 |
| 186544 | 3.1661 | 1494 |
| 186545 | 1.1235 | 785 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 88.18 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 87.53 | gold quality |
| adrenal tissue | UBERON:0018303 | 87.34 | gold quality |
| bronchial epithelial cell | CL:0002328 | 86.82 | gold quality |
| ventricular zone | UBERON:0003053 | 85.66 | gold quality |
| upper leg skin | UBERON:0004262 | 85.46 | gold quality |
| ganglionic eminence | UBERON:0004023 | 85.23 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 85.03 | gold quality |
| stromal cell of endometrium | CL:0002255 | 84.93 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 83.03 | gold quality |
| endothelial cell | CL:0000115 | 82.93 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 82.80 | gold quality |
| right adrenal gland | UBERON:0001233 | 82.55 | gold quality |
| gall bladder | UBERON:0002110 | 82.51 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.48 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 82.31 | gold quality |
| islet of Langerhans | UBERON:0000006 | 82.08 | gold quality |
| left adrenal gland | UBERON:0001234 | 81.98 | gold quality |
| calcaneal tendon | UBERON:0003701 | 81.82 | gold quality |
| adrenal gland | UBERON:0002369 | 81.79 | gold quality |
| seminal vesicle | UBERON:0000998 | 81.48 | gold quality |
| skin of hip | UBERON:0001554 | 81.45 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 81.44 | gold quality |
| endometrium | UBERON:0001295 | 81.25 | gold quality |
| adrenal cortex | UBERON:0001235 | 81.14 | gold quality |
| cortical plate | UBERON:0005343 | 80.94 | gold quality |
| penis | UBERON:0000989 | 80.91 | gold quality |
| gingiva | UBERON:0001828 | 79.95 | gold quality |
| gingival epithelium | UBERON:0001949 | 79.84 | gold quality |
| thyroid gland | UBERON:0002046 | 79.83 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.17 |
| E-MTAB-7303 | no | 85.07 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
152 targeting RBBP9, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
Literature-anchored findings (GeneRIF, showing 7)
- RBBP10 was expressed widely in various human tissues, and the expression level is somewhat higher in tumor tissues than in normal tissues. (PMID:12296629)
- The crystal structure of human RBBP9 has been determined at 1.72 A resolution by the seleno-methionyl single-wavelength anomalous diffraction method. (PMID:19004028)
- identify RBBP9 as a tumor-associated serine hydrolase that displays elevated activity in pancreatic carcinomas. RBBP9 promotes pancreatic carcinogenesis. (PMID:20080647)
- Data identified RBBP4 and RBBP9 as required for maintenance of multiple PS cell types, and both RBBPs were bound to RB in PS cells. (PMID:21689726)
- Structure- function studies of RBBP9 suggest possible routes for novel cancer drug discovery programs. (PMID:21933118)
- blood samples of lateral sclerosis patients were found to have significantly different levels of expression of CyFIP2 and RbBP9 compared to the levels of expression in control subjects. (PMID:22430187)
- Genome-wide siRNA screens identify RBBP9 function as a potential target in Fanconi anaemia-deficient head-and-neck squamous cell carcinoma. (PMID:36639418)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rbbp9 | ENSDARG00000040713 |
| mus_musculus | Rbbp9 | ENSMUSG00000027428 |
| rattus_norvegicus | Rbbp9 | ENSRNOG00000007972 |
Protein
Protein identifiers
Serine hydrolase RBBP9 — O75884 (reviewed: O75884)
Alternative names: B5T-overexpressed gene protein, Retinoblastoma-binding protein 10, Retinoblastoma-binding protein 9
All UniProt accessions (1): O75884
UniProt curated annotations — full annotation on UniProt →
Function. Serine hydrolase. Catalyzes the hydrolytic activation of amino acid ester of the antiviral prodrug valacyclovir to its corresponding active drug, acyclovir. May negatively regulate basal or autocrine TGF-beta signaling by suppressing SMAD2-SMAD3 phosphorylation. May play a role in the transformation process due to its capacity to confer resistance to the growth-inhibitory effects of TGF-beta through interaction with RB1 and the subsequent displacement of E2F1.
Subunit / interactions. Interacts with RB1; the interaction disrupts RB1 binding to E2F1. Interacts with RBL1 and RBL2.
Tissue specificity. Expressed at higher levels in tumor tissues such as carcinoma.
Activity regulation. Inhibited by the natural product emetine produced by the ipecac root.
Miscellaneous. Plays a role in maintaining pluripotency in human stem cells in vitro.
Similarity. Belongs to the RBBP9 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75884-1 | 1 | yes |
| O75884-2 | 2 |
RefSeq proteins (1): NP_006597* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR010662 | RBBP9/YdeN | Family |
| IPR029058 | AB_hydrolase_fold | Homologous_superfamily |
Pfam: PF06821
Catalyzed reactions (Rhea), 1 shown:
- valacyclovir + H2O = acyclovir + L-valine + H(+) (RHEA:83871)
UniProt features (33 total): strand 8, sequence conflict 7, helix 7, turn 4, active site 3, chain 1, region of interest 1, splice variant 1, mutagenesis site 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9FCR | X-RAY DIFFRACTION | 1.37 |
| 7OEX | X-RAY DIFFRACTION | 1.51 |
| 2QS9 | X-RAY DIFFRACTION | 1.72 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75884-F1 | 96.87 | 0.95 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 75 (charge relay system); 138 (charge relay system); 165 (charge relay system)
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 75 | loss of serine hydrolase activity. fails to block tgf-beta-mediated anti-proliferative signal in tumor cells. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 98 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, GOBP_LUNG_EPITHELIUM_DEVELOPMENT, GOBP_LUNG_CELL_DIFFERENTIATION, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_RESPIRATORY_SYSTEM_DEVELOPMENT, IK3_01, chr20p11, ER_Q6_01, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP, MIKKELSEN_ES_ICP_WITH_H3K4ME3
GO Biological Process (4): xenobiotic metabolic process (GO:0006805), response to nematode (GO:0009624), positive regulation of gene expression (GO:0010628), type II pneumocyte differentiation (GO:0060510)
GO Molecular Function (3): serine hydrolase activity (GO:0017171), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (1): nucleoplasm (GO:0005654)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| metabolic process | 1 |
| cellular response to xenobiotic stimulus | 1 |
| response to other organism | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| lung secretory cell differentiation | 1 |
| hydrolase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
588 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RBBP9 | YRDC | Q86U90 | 895 |
| RBBP9 | Q92681 | Q92681 | 710 |
| RBBP9 | PPME1 | Q9Y570 | 673 |
| RBBP9 | ZNF133 | P52736 | 621 |
| RBBP9 | SLC6A2 | P23975 | 550 |
| RBBP9 | ABHD17B | Q5VST6 | 541 |
| RBBP9 | BLCAP | P62952 | 529 |
| RBBP9 | CYFIP2 | Q96F07 | 507 |
| RBBP9 | SLC22A6 | Q4U2R8 | 497 |
| RBBP9 | SLC24A3 | Q9HC58 | 488 |
| RBBP9 | LYPLA2 | O95372 | 484 |
| RBBP9 | SEC23B | Q15437 | 475 |
| RBBP9 | KAT14 | Q9H8E8 | 463 |
| RBBP9 | PREPL | Q4J6C6 | 459 |
| RBBP9 | ABHD17A | Q96GS6 | 454 |
| RBBP9 | BPHL | Q86WA6 | 454 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RBBP9 | RCBTB2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TERF2IP | RBBP9 | psi-mi:“MI:0915”(physical association) | 0.510 |
| GOT1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| RBBP9 | TERF2IP | psi-mi:“MI:0915”(physical association) | 0.000 |
| RBBP9 | RCBTB2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (16): RCBTB2 (Two-hybrid), RBBP9 (Proximity Label-MS), RBBP9 (Proximity Label-MS), RBBP9 (Proximity Label-MS), RBBP9 (Proximity Label-MS), RBBP9 (Affinity Capture-MS), RBBP9 (Two-hybrid), RBBP9 (Affinity Capture-Western), RBBP9 (Affinity Capture-Western), RBBP9 (Affinity Capture-Western), RBBP9 (Affinity Capture-MS), RBBP9 (Affinity Capture-MS), LMNA (Cross-Linking-MS (XL-MS)), RBBP9 (Affinity Capture-RNA), RBBP9 (Two-hybrid)
ESM2 similar proteins: A0PJE2, A4FUZ6, A6QP05, D2WKD9, F1QWW8, O49213, O66148, O75884, O88736, O88851, P13653, P15904, P23591, P30043, P52556, P56658, P56937, Q06136, Q0IH28, Q0VCN1, Q0VFE7, Q13630, Q2KIJ5, Q3T0R4, Q41578, Q42850, Q566S6, Q59987, Q5R6U1, Q5RBE5, Q5RJY4, Q5ZID0, Q62904, Q66KC4, Q67WR2, Q6GV12, Q6IAN0, Q6P5L8, Q6PAY8, Q7XKF3
Diamond homologs: O75884, O88350, O88851
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
40 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 29 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
574 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:18490394:CCA:C | donor_gain | 1.0000 |
| 20:18494065:T:C | acceptor_gain | 1.0000 |
| 20:18497065:TTAC:T | donor_loss | 1.0000 |
| 20:18497066:TA:T | donor_loss | 1.0000 |
| 20:18497067:A:AC | donor_gain | 1.0000 |
| 20:18497068:C:CC | donor_gain | 1.0000 |
| 20:18497068:C:CG | donor_loss | 1.0000 |
| 20:18497068:CCTT:C | donor_gain | 1.0000 |
| 20:18489872:ATCGG:A | donor_gain | 0.9900 |
| 20:18489873:T:C | donor_gain | 0.9900 |
| 20:18489882:T:TA | donor_gain | 0.9900 |
| 20:18489987:TATC:T | acceptor_gain | 0.9900 |
| 20:18489989:TC:T | acceptor_gain | 0.9900 |
| 20:18489990:CC:C | acceptor_gain | 0.9900 |
| 20:18489991:C:CC | acceptor_gain | 0.9900 |
| 20:18489992:T:C | acceptor_loss | 0.9900 |
| 20:18490393:A:AC | donor_gain | 0.9900 |
| 20:18490394:C:CC | donor_gain | 0.9900 |
| 20:18490478:TAC:T | acceptor_gain | 0.9900 |
| 20:18490478:TACC:T | acceptor_loss | 0.9900 |
| 20:18490482:T:A | acceptor_loss | 0.9900 |
| 20:18494073:C:CT | acceptor_gain | 0.9900 |
| 20:18489986:GTATC:G | acceptor_gain | 0.9800 |
| 20:18490389:ACT:A | donor_loss | 0.9800 |
| 20:18490391:T:TA | donor_loss | 0.9800 |
| 20:18490392:TACC:T | donor_gain | 0.9800 |
| 20:18490393:ACC:A | donor_loss | 0.9800 |
| 20:18490393:ACCA:A | donor_gain | 0.9800 |
| 20:18490394:C:CT | donor_loss | 0.9800 |
| 20:18490394:CCAC:C | donor_gain | 0.9800 |
AlphaMissense
1229 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:18493982:C:A | S75I | 0.986 |
| 20:18489983:G:C | F114L | 0.985 |
| 20:18489983:G:T | F114L | 0.985 |
| 20:18489985:A:G | F114L | 0.985 |
| 20:18497101:A:G | W23R | 0.984 |
| 20:18497101:A:T | W23R | 0.984 |
| 20:18490480:C:A | R83S | 0.982 |
| 20:18490480:C:G | R83S | 0.982 |
| 20:18494043:A:G | W55R | 0.982 |
| 20:18494043:A:T | W55R | 0.982 |
| 20:18489827:A:C | F166L | 0.980 |
| 20:18489827:A:T | F166L | 0.980 |
| 20:18489829:A:G | F166L | 0.980 |
| 20:18493977:C:A | G77W | 0.979 |
| 20:18497139:A:T | V10D | 0.977 |
| 20:18489830:G:C | H165Q | 0.975 |
| 20:18489830:G:T | H165Q | 0.975 |
| 20:18493976:C:T | G77E | 0.975 |
| 20:18489973:A:G | W118R | 0.973 |
| 20:18489973:A:T | W118R | 0.973 |
| 20:18493976:C:A | G77V | 0.973 |
| 20:18494032:G:C | F58L | 0.973 |
| 20:18494032:G:T | F58L | 0.973 |
| 20:18494034:A:G | F58L | 0.973 |
| 20:18493964:G:T | A81D | 0.972 |
| 20:18489944:G:C | C127W | 0.971 |
| 20:18493958:C:G | R83T | 0.971 |
| 20:18493981:A:C | S75R | 0.970 |
| 20:18493981:A:T | S75R | 0.970 |
| 20:18493983:T:G | S75R | 0.970 |
dbSNP variants (sampled 300 via entrez): RS1000027169 (20:18493291 A>C), RS1000490220 (20:18494608 G>A), RS1000621488 (20:18486457 C>G), RS1000817341 (20:18498320 T>C), RS1000842832 (20:18494273 T>G), RS1000879394 (20:18489707 A>G,T), RS1001030133 (20:18494275 C>T), RS1001363753 (20:18487290 T>C), RS1001425308 (20:18491801 A>G), RS1001544521 (20:18486922 A>C), RS1002115158 (20:18492956 A>G,T), RS1002377379 (20:18492584 C>A), RS1002572320 (20:18493262 G>A), RS1002670614 (20:18499081 A>G), RS1002819452 (20:18495327 T>G)
Disease associations
OMIM: gene MIM:602908 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1075121 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 22,457 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL50588 | EMETINE | 4 | 22,457 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — 3.1.1.- Carboxylic Ester Hydrolases
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| Ala(1-naph)-Pro-CN | Inhibition | 6.06 | pIC50 |
ChEMBL bioactivities
13 potent at pChembl≥5 of 13 total, top 10 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.20 | IC50 | 635 | nM | CHEMBL1092791 |
| 6.19 | IC50 | 640 | nM | CHEMBL1092791 |
| 5.92 | IC50 | 1200 | nM | CHEMBL1092115 |
| 5.82 | IC50 | 1500 | nM | CHEMBL1092816 |
| 5.72 | IC50 | 1900 | nM | CHEMBL1093346 |
| 5.30 | IC50 | 5000 | nM | CHEMBL1092116 |
| 5.24 | IC50 | 5700 | nM | CHEMBL1092376 |
| 5.11 | IC50 | 7800 | nM | EMETINE |
| 5.04 | IC50 | 9200 | nM | CHEMBL1092114 |
| 5.04 | IC50 | 9100 | nM | CHEMBL1092114 |
PubChem BioAssay actives
8 with measured affinity, of 59 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [(E)-1-(1,3-thiazol-2-yl)ethylideneamino] cyclohexanecarboxylate | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 0.6400 | uM |
| [(3,5-dimethyl-4-oxocyclohexa-2,5-dien-1-ylidene)amino] (E)-3-phenylprop-2-enoate | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 1.2000 | uM |
| [(3,5-dimethyl-4-oxocyclohexa-2,5-dien-1-ylidene)amino] 4-methoxybenzoate | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 1.5000 | uM |
| [(E)-1-(1,3-thiazol-2-yl)ethylideneamino] 4-chlorobenzoate | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 1.9000 | uM |
| [(E)-1-(1,3-thiazol-2-yl)ethylideneamino] 4-fluorobenzoate | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 5.7000 | uM |
| (2S,3R,11bS)-2-[[(1R)-6,7-dimethoxy-1,2,3,4-tetrahydroisoquinolin-1-yl]methyl]-3-ethyl-9,10-dimethoxy-2,3,4,6,7,11b-hexahydro-1H-benzo[a]quinolizine | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 7.8000 | uM |
| [(E)-1-(1,3-thiazol-2-yl)ethylideneamino] 4-methoxybenzoate | 475016: Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | ic50 | 9.2000 | uM |
CTD chemical–gene interactions
37 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression, decreases expression | 3 |
| Acetaminophen | decreases expression | 2 |
| bisphenol F | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| methylparaben | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, increases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| torcetrapib | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Arsenic | increases abundance, increases expression, affects cotreatment | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Cadmium | increases abundance, decreases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Coumestrol | affects cotreatment, increases expression | 1 |
| Diuron | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Thiram | decreases expression | 1 |
| Urethane | decreases expression | 1 |
ChEMBL screening assays
9 unique, capped per target: 8 binding, 1 unclassified
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1114312 | Binding | Displacement of fluorophosphate-rhodamine from RBBP9 transfected in human HEK293T cells proteomes after 30 mins by SDS-PAGE gel fluorescence assay | Oxime esters as selective, covalent inhibitors of the serine hydrolase retinoblastoma-binding protein 9 (RBBP9). — Bioorg Med Chem Lett |
| CHEMBL1738515 | Unclassified | PUBCHEM_BIOASSAY: Late stage results from the probe development effort to identify inhibitors of Retinoblastoma Binding Protein 9 (RBBP9): Gel-based Activity-Based Protein Profiling (ABPP) IC50. (Class of assay: confirmatory) [Related pubch | PubChem BioAssay data set |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.