RBM38-AS1

Summary

RBM38-AS1 (RBM38 antisense RNA 1, HGNC:40725) is a long non-coding RNA gene on chromosome 20q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40725
Approved symbol	RBM38-AS1
Name	RBM38 antisense RNA 1
Location	20q13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000218018
Ensembl biotype	lncRNA
Entrez	100291105
RNAcentral	URS0000BC45A2 — lncRNA, 1534 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000417346, ENST00000670533, ENST00000686390, ENST00000816609, ENST00000816610, ENST00000816611

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417346 — 2 exons

Exon	Start	End
ENSE00001709822	57392279	57393062
ENSE00001727094	57383719	57384915

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 90.50.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.4613 / max 56.6902, expressed in 92 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
188105	0.3279	81
188104	0.1334	51

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.50	gold quality
bone marrow	UBERON:0002371	83.65	gold quality
right atrium auricular region	UBERON:0006631	81.63	gold quality
bone marrow cell	CL:0002092	80.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.63	gold quality
blood	UBERON:0000178	78.54	gold quality
granulocyte	CL:0000094	77.37	gold quality
muscle layer of sigmoid colon	UBERON:0035805	76.85	gold quality
muscle of leg	UBERON:0001383	76.75	gold quality
spleen	UBERON:0002106	76.63	gold quality
heart	UBERON:0000948	76.62	gold quality
gastrocnemius	UBERON:0001388	76.48	gold quality
skeletal muscle tissue	UBERON:0001134	76.29	gold quality
heart left ventricle	UBERON:0002084	76.21	gold quality
lower esophagus mucosa	UBERON:0035834	76.11	gold quality
lower esophagus muscularis layer	UBERON:0035833	75.30	gold quality
lower esophagus	UBERON:0013473	75.29	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	74.93	gold quality
apex of heart	UBERON:0002098	74.89	gold quality
mucosa of transverse colon	UBERON:0004991	74.84	gold quality
lymph node	UBERON:0000029	74.67	gold quality
mucosa of stomach	UBERON:0001199	74.20	gold quality
cerebellar hemisphere	UBERON:0002245	73.67	gold quality
monocyte	CL:0000576	73.66	gold quality
right hemisphere of cerebellum	UBERON:0014890	73.55	gold quality
cerebellar cortex	UBERON:0002129	73.48	gold quality
right uterine tube	UBERON:0001302	73.47	gold quality
leukocyte	CL:0000738	73.45	gold quality
right lobe of liver	UBERON:0001114	73.42	gold quality
cerebellum	UBERON:0002037	73.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.