RBMS3-AS3

Summary

RBMS3-AS3 (RBMS3 antisense RNA 3, HGNC:39989) is a long non-coding RNA gene on chromosome 3p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39989
Approved symbol	RBMS3-AS3
Name	RBMS3 antisense RNA 3
Location	3p24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235904
Ensembl biotype	lncRNA
Entrez	100873979
RNAcentral	URS000075C792 — lncRNA, 880 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000413430, ENST00000635847, ENST00000655701, ENST00000658006, ENST00000664598, ENST00000741102, ENST00000798927, ENST00000798928, ENST00000798929

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413430 — 2 exons

Exon	Start	End
ENSE00001598474	29290678	29290726
ENSE00001672786	29264194	29264757

Expression profiles

Bgee: expression breadth ubiquitous, 161 present calls, max score 84.34.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2281 / max 5.1095, expressed in 115 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
41554	0.2281	115

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.34	gold quality
hindlimb stylopod muscle	UBERON:0004252	76.97	gold quality
descending thoracic aorta	UBERON:0002345	76.72	gold quality
muscle of leg	UBERON:0001383	76.42	gold quality
thoracic aorta	UBERON:0001515	76.06	gold quality
ascending aorta	UBERON:0001496	76.05	gold quality
calcaneal tendon	UBERON:0003701	75.94	gold quality
gastrocnemius	UBERON:0001388	75.55	gold quality
sural nerve	UBERON:0015488	75.14	gold quality
right atrium auricular region	UBERON:0006631	75.02	gold quality
vastus lateralis	UBERON:0001379	74.92	silver quality
left coronary artery	UBERON:0001626	74.70	gold quality
quadriceps femoris	UBERON:0001377	74.60	silver quality
aorta	UBERON:0000947	74.33	gold quality
right coronary artery	UBERON:0001625	73.83	gold quality
cardiac atrium	UBERON:0002081	73.44	gold quality
popliteal artery	UBERON:0002250	73.38	gold quality
tibial artery	UBERON:0007610	73.36	gold quality
coronary artery	UBERON:0001621	72.77	gold quality
tibialis anterior	UBERON:0001385	72.58	silver quality
right lung	UBERON:0002167	71.11	gold quality
skeletal muscle tissue	UBERON:0001134	70.05	gold quality
heart	UBERON:0000948	69.26	gold quality
right adrenal gland cortex	UBERON:0035827	68.89	gold quality
tibial nerve	UBERON:0001323	68.31	gold quality
pancreatic ductal cell	CL:0002079	68.27	silver quality
muscle tissue	UBERON:0002385	68.19	gold quality
biceps brachii	UBERON:0001507	68.15	silver quality
left adrenal gland cortex	UBERON:0035825	67.95	gold quality
mucosa of stomach	UBERON:0001199	67.89	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	6.83
E-ANND-3	no	1.83

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.