RC3H1-IT1

Summary

RC3H1-IT1 (RC3H1 intronic transcript 1, HGNC:41496) is a long non-coding RNA gene on chromosome 1q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41496
Approved symbol	RC3H1-IT1
Name	RC3H1 intronic transcript 1
Location	1q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236535
Ensembl biotype	lncRNA
Entrez	106481790
RNAcentral	URS0000076FD7 — lncRNA, 448 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000421851

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421851 — 2 exons

Exon	Start	End
ENSE00001613184	174009267	174009361
ENSE00001737842	174015854	174016206

Expression profiles

Bgee: expression breadth ubiquitous, 108 present calls, max score 83.03.

Top tissues by expression

108 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.03	gold quality
colonic epithelium	UBERON:0000397	81.96	gold quality
uterine cervix	UBERON:0000002	78.88	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.49	silver quality
bone marrow cell	CL:0002092	77.61	gold quality
bone marrow	UBERON:0002371	74.33	gold quality
skeletal muscle tissue	UBERON:0001134	73.59	gold quality
sural nerve	UBERON:0015488	72.00	gold quality
tonsil	UBERON:0002372	68.27	gold quality
calcaneal tendon	UBERON:0003701	66.96	gold quality
adrenal tissue	UBERON:0018303	66.71	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.75	gold quality
liver	UBERON:0002107	63.50	gold quality
kidney	UBERON:0002113	63.31	gold quality
blood	UBERON:0000178	62.83	gold quality
stromal cell of endometrium	CL:0002255	62.25	gold quality
corpus callosum	UBERON:0002336	61.69	gold quality
urinary bladder	UBERON:0001255	61.23	gold quality
monocyte	CL:0000576	60.24	gold quality
islet of Langerhans	UBERON:0000006	58.21	gold quality
endometrium	UBERON:0001295	58.02	gold quality
lymph node	UBERON:0000029	56.74	gold quality
duodenum	UBERON:0002114	56.45	gold quality
lung	UBERON:0002048	55.80	gold quality
cortex of kidney	UBERON:0001225	55.70	gold quality
prefrontal cortex	UBERON:0000451	55.18	gold quality
thoracic mammary gland	UBERON:0005200	54.78	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.60	gold quality
adrenal gland	UBERON:0002369	54.39	gold quality
muscle of leg	UBERON:0001383	53.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.