RCAN2-DT

Summary

RCAN2-DT (RCAN2 divergent transcript, HGNC:55661) is a long non-coding RNA gene on chromosome 6p12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55661
Approved symbol	RCAN2-DT
Name	RCAN2 divergent transcript
Location	6p12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236466
Ensembl biotype	lncRNA
Entrez	101926898
RNAcentral	URS00007E4DDC — lncRNA, 1350 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000415787, ENST00000657801, ENST00000664425, ENST00000665854, ENST00000762069, ENST00000762070, ENST00000762071, ENST00000762072, ENST00000762073, ENST00000762074, ENST00000762075, ENST00000762076, ENST00000762077, ENST00000762078, ENST00000762079, ENST00000762080, ENST00000762081, ENST00000762082, ENST00000762083, ENST00000762084, ENST00000762085, ENST00000762086, ENST00000762087, ENST00000762088, ENST00000762089

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415787 — 3 exons

Exon	Start	End
ENSE00001746876	46492052	46492127
ENSE00001753759	46530217	46530391
ENSE00001799397	46532388	46532758

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 88.26.

Top tissues by expression

111 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	88.26	gold quality
popliteal artery	UBERON:0002250	67.03	gold quality
tibial artery	UBERON:0007610	67.00	gold quality
skeletal muscle tissue	UBERON:0001134	66.04	gold quality
mucosa of stomach	UBERON:0001199	65.12	gold quality
descending thoracic aorta	UBERON:0002345	64.46	gold quality
thoracic aorta	UBERON:0001515	63.48	gold quality
ascending aorta	UBERON:0001496	63.21	gold quality
heart left ventricle	UBERON:0002084	61.76	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.79	gold quality
left coronary artery	UBERON:0001626	60.78	gold quality
right coronary artery	UBERON:0001625	60.66	gold quality
heart	UBERON:0000948	59.11	gold quality
corpus callosum	UBERON:0002336	59.06	gold quality
calcaneal tendon	UBERON:0003701	57.64	gold quality
primary visual cortex	UBERON:0002436	57.27	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	56.60	gold quality
apex of heart	UBERON:0002098	56.46	gold quality
prefrontal cortex	UBERON:0000451	56.12	gold quality
islet of Langerhans	UBERON:0000006	55.60	gold quality
substantia nigra	UBERON:0002038	55.02	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.65	gold quality
cortex of kidney	UBERON:0001225	54.11	gold quality
monocyte	CL:0000576	53.99	silver quality
right atrium auricular region	UBERON:0006631	53.75	gold quality
endometrium	UBERON:0001295	53.58	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	53.15	gold quality
superior frontal gyrus	UBERON:0002661	52.64	gold quality
frontal cortex	UBERON:0001870	52.28	gold quality
placenta	UBERON:0001987	52.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.