RCAN3AS

Summary

RCAN3AS (RCAN3 antisense RNA, HGNC:39009) is a long non-coding RNA gene on chromosome 1p36.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39009
Approved symbol	RCAN3AS
Name	RCAN3 antisense RNA
Location	1p36.11
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00001428
Ensembl gene	ENSG00000286061
Ensembl biotype	lncRNA
Entrez	100750325
RNAcentral	URS0000A76B97 — lncRNA, 545 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000651433, ENST00000651630, ENST00000652048, ENST00000652351, ENST00000652371, ENST00000715598, ENST00000715599, ENST00000715600, ENST00000782616, ENST00000782617, ENST00000782618, ENST00000782619, ENST00000782620, ENST00000782621, ENST00000782622, ENST00000782623, ENST00000782624, ENST00000782625, ENST00000782626, ENST00000782627, ENST00000782628, ENST00000782629, ENST00000782630

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000651433 — 3 exons

Exon	Start	End
ENSE00003842396	24496333	24496596
ENSE00003843562	24502348	24502360
ENSE00003850968	24499653	24499763

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 91.93.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2564 / max 34.4642, expressed in 57 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
11044	0.2564	57

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.93	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.96	gold quality
monocyte	CL:0000576	78.49	gold quality
leukocyte	CL:0000738	78.13	gold quality
right uterine tube	UBERON:0001302	76.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	76.88	gold quality
islet of Langerhans	UBERON:0000006	74.07	gold quality
lymph node	UBERON:0000029	73.11	gold quality
granulocyte	CL:0000094	72.81	gold quality
blood	UBERON:0000178	71.32	gold quality
bone marrow cell	CL:0002092	69.77	silver quality
hindlimb stylopod muscle	UBERON:0004252	69.68	gold quality
prostate gland	UBERON:0002367	68.58	gold quality
tonsil	UBERON:0002372	67.74	gold quality
vermiform appendix	UBERON:0001154	67.64	gold quality
pituitary gland	UBERON:0000007	67.53	gold quality
fallopian tube	UBERON:0003889	67.19	gold quality
pancreas	UBERON:0001264	66.50	gold quality
skeletal muscle tissue	UBERON:0001134	66.25	gold quality
adenohypophysis	UBERON:0002196	65.66	gold quality
bone marrow	UBERON:0002371	65.62	gold quality
gall bladder	UBERON:0002110	65.34	gold quality
spleen	UBERON:0002106	64.39	gold quality
right lobe of thyroid gland	UBERON:0001119	64.30	gold quality
thyroid gland	UBERON:0002046	63.27	gold quality
left lobe of thyroid gland	UBERON:0001120	62.48	gold quality
urinary bladder	UBERON:0001255	61.99	gold quality
body of pancreas	UBERON:0001150	61.87	gold quality
small intestine	UBERON:0002108	61.47	gold quality
lower esophagus mucosa	UBERON:0035834	61.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.