REC8
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Also known as Rec8pkleisin-alpha
Summary
REC8 (REC8 meiotic recombination protein, HGNC:16879) is a protein-coding gene on chromosome 14q12, encoding Meiotic recombination protein REC8 homolog (O95072). Required during meiosis for separation of sister chromatids and homologous chromosomes.
This gene encodes a member of the kleisin family of SMC (structural maintenance of chromosome) protein partners. The protein localizes to the axial elements of chromosomes during meiosis in both oocytes and spermatocytes. In the mouse, the homologous protein is a key component of the meiotic cohesion complex, which regulates sister chromatid cohesion and recombination between homologous chromosomes. Multiple alternatively spliced variants, encoding the same protein, have been found for this gene.
Source: NCBI Gene 9985 — RefSeq curated summary.
At a glance
- Gene–disease (curated): primary ovarian failure (Moderate, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 48 total — 1 pathogenic, 2 likely-pathogenic
- MANE Select transcript:
NM_001048205
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16879 |
| Approved symbol | REC8 |
| Name | REC8 meiotic recombination protein |
| Location | 14q12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Rec8p, kleisin-alpha |
| Ensembl gene | ENSG00000100918 |
| Ensembl biotype | protein_coding |
| OMIM | 608193 |
| Entrez | 9985 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 7 retained_intron, 6 protein_coding, 1 non_stop_decay, 1 protein_coding_CDS_not_defined
ENST00000557806, ENST00000558191, ENST00000558381, ENST00000559797, ENST00000559939, ENST00000560032, ENST00000560501, ENST00000560823, ENST00000611366, ENST00000619111, ENST00000619284, ENST00000619469, ENST00000620473, ENST00000885016, ENST00000885017
RefSeq mRNA: 2 — MANE Select: NM_001048205
NM_001048205, NM_005132
CCDS: CCDS41932
Canonical transcript exons
ENST00000611366 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003460640 | 24173291 | 24173411 |
| ENSE00003473445 | 24178606 | 24178672 |
| ENSE00003479305 | 24172713 | 24172781 |
| ENSE00003532762 | 24179397 | 24179463 |
| ENSE00003542350 | 24179085 | 24179133 |
| ENSE00003610799 | 24175543 | 24175624 |
| ENSE00003650760 | 24178777 | 24178916 |
| ENSE00003684061 | 24179595 | 24179726 |
| ENSE00003714520 | 24172080 | 24172608 |
| ENSE00003716797 | 24177709 | 24177758 |
| ENSE00003717469 | 24180010 | 24180254 |
| ENSE00003717857 | 24176822 | 24176901 |
| ENSE00003718136 | 24172899 | 24173041 |
| ENSE00003719373 | 24177465 | 24177541 |
| ENSE00003721780 | 24178091 | 24178222 |
| ENSE00003725227 | 24177353 | 24177383 |
| ENSE00003735819 | 24173126 | 24173198 |
| ENSE00003740164 | 24177141 | 24177222 |
| ENSE00003742320 | 24179800 | 24179906 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 98.32.
FANTOM5 (CAGE): breadth broad, TPM avg 19.1912 / max 409.1467, expressed in 790 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 139001 | 15.5753 | 756 |
| 139000 | 2.5923 | 581 |
| 139002 | 0.8621 | 321 |
| 139003 | 0.1615 | 95 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adenohypophysis | UBERON:0002196 | 98.32 | gold quality |
| pituitary gland | UBERON:0000007 | 98.29 | gold quality |
| ganglionic eminence | UBERON:0004023 | 96.68 | gold quality |
| right uterine tube | UBERON:0001302 | 96.67 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 96.61 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.23 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.20 | gold quality |
| cerebellum | UBERON:0002037 | 96.15 | gold quality |
| ventricular zone | UBERON:0003053 | 94.82 | gold quality |
| cortical plate | UBERON:0005343 | 94.02 | gold quality |
| bone marrow | UBERON:0002371 | 93.97 | gold quality |
| gall bladder | UBERON:0002110 | 93.78 | gold quality |
| body of stomach | UBERON:0001161 | 93.67 | gold quality |
| right testis | UBERON:0004534 | 93.30 | gold quality |
| bone marrow cell | CL:0002092 | 93.13 | gold quality |
| left testis | UBERON:0004533 | 93.02 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 92.97 | gold quality |
| spleen | UBERON:0002106 | 92.68 | gold quality |
| testis | UBERON:0000473 | 92.44 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.32 | gold quality |
| stomach | UBERON:0000945 | 92.05 | gold quality |
| granulocyte | CL:0000094 | 91.84 | gold quality |
| fundus of stomach | UBERON:0001160 | 91.59 | gold quality |
| fallopian tube | UBERON:0003889 | 91.36 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 91.27 | gold quality |
| hypothalamus | UBERON:0001898 | 91.19 | gold quality |
| sural nerve | UBERON:0015488 | 90.72 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 90.69 | gold quality |
| blood | UBERON:0000178 | 90.56 | gold quality |
| right lung | UBERON:0002167 | 90.54 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.54 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
9 targeting REC8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-892C-5P | 99.16 | 70.56 | 2116 |
| HSA-MIR-6761-5P | 98.71 | 68.03 | 1504 |
| HSA-MIR-299-5P | 98.56 | 71.14 | 1140 |
| HSA-MIR-3652 | 97.71 | 65.43 | 1890 |
| HSA-MIR-4430 | 97.47 | 65.61 | 1813 |
Literature-anchored findings (GeneRIF, showing 13)
- The mouse ortholog of REC8L1 is required for proper synapsis of homologous chromosomes during meiosis (PMID:15935783)
- Indicate that polymorphisms of the Rec 8 gene are not a common cause of severe male factor infertility. (PMID:18570052)
- Data show that REC8 is constitutively expressed in tumour cells, along with SGOL1 and SGOL2, and that REC8 becomes modified after irradiation. (PMID:19463812)
- REC8 being a novel major bona fide tumor suppressor gene and a robust epigenetic target of the PI3K pathway. Aberrant inactivation of REC8 through hypermethylation by the PI3K pathway may represent an important mechanism mediating the oncogenic functions of the PI3K pathway (PMID:26472282)
- Study confirmed that REC8 was downregulated in gastric neoplasm, especially in the EBV-associated subtype, via promoter methylation. (PMID:27212034)
- we determined that REC8 interacted with EGR1, and inhibited EMT in gastric cancer cells. We thus propose further studies of the pathways associated with REC8 and EGR1 to potentially find novel targets in the treatment for gastric cancer. (PMID:29393474)
- Rec8-Stag3 cohesin is shown to be susceptible to Wapl-dependent ring opening and sororin-mediated protection. (PMID:29724914)
- REC8 suppresses tumor angiogenesis by inhibition of NF-kappaB-mediated vascular endothelial growth factor expression in gastric cancer cells. (PMID:32958054)
- Centromeres are dismantled by foundational meiotic proteins Spo11 and Rec8. (PMID:33658710)
- REC8 promotes tumor migration, invasion and angiogenesis by targeting the PKA pathway in hepatocellular carcinoma. (PMID:33677646)
- Meiotic genes in premature ovarian insufficiency: variants in HROB and REC8 as likely genetic causes. (PMID:34707299)
- REC8 inhibits proliferation, migration and invasion of breast cancer cells by targeting CDC20. (PMID:35616161)
- REC8 regulates neuroblastoma cell proliferation, migration, invasion, and angiogenesis via STAT3/VEGF signaling. (PMID:38105365)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rec8b | ENSDARG00000069260 |
| danio_rerio | rec8a | ENSDARG00000078329 |
| mus_musculus | Rec8 | ENSMUSG00000002324 |
| rattus_norvegicus | Rec8 | ENSRNOG00000019503 |
| drosophila_melanogaster | vtd | FBGN0260987 |
Paralogs (2): RAD21 (ENSG00000164754), RAD21L1 (ENSG00000244588)
Protein
Protein identifiers
Meiotic recombination protein REC8 homolog — O95072 (reviewed: O95072)
Alternative names: Cohesin Rec8p
All UniProt accessions (4): O95072, A0A075B715, H0YM87, H0YMV7
UniProt curated annotations — full annotation on UniProt →
Function. Required during meiosis for separation of sister chromatids and homologous chromosomes. Proteolytic cleavage of REC8 on chromosome arms by separin during anaphase I allows for homologous chromosome separation in meiosis I and cleavage of REC8 on centromeres during anaphase II allows for sister chromatid separation in meiosis II.
Subunit / interactions. Interacts (phosphorylated and unphosphorylated form) with SMC3. Interacts with SYCP3. Interacts (phosphorylated and unphosphorylated form) with SMC1B. Does not interact with SMC1A. Interacts with RAD51. Forms a complex with EWSR1, PRDM9, SYCP3 and SYCP1; complex formation is dependent of phosphorylated form of REC8 and requires PRDM9 bound to hotspot DNA; EWSR1 joins PRDM9 with the chromosomal axis through REC8.
Subcellular location. Nucleus. Chromosome. Centromere.
Tissue specificity. Expressed in testis and thymus. Expressed in the B-cell lines WI-L2-NS and Namalwa (at protein level).
Post-translational modifications. Phosphorylated.
Similarity. Belongs to the rad21 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O95072-1 | 1 | yes |
| O95072-2 | 2 |
RefSeq proteins (2): NP_001041670, NP_005123 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006909 | Rad21/Rec8_C_eu | Domain |
| IPR006910 | Rad21_Rec8_N | Domain |
| IPR023093 | ScpA-like_C | Homologous_superfamily |
| IPR036390 | WH_DNA-bd_sf | Homologous_superfamily |
| IPR039781 | Rad21/Rec8-like | Family |
Pfam: PF04824, PF04825
UniProt features (12 total): sequence conflict 4, sequence variant 3, chain 1, region of interest 1, compositionally biased region 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O95072-F1 | 65.16 | 0.16 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 148
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-1221632 | Meiotic synapsis |
MSigDB gene sets: 188 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, GOBP_MEIOTIC_CHROMOSOME_SEGREGATION, WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, GOBP_CHROMOSOME_ORGANIZATION, REACTOME_MEIOTIC_SYNAPSIS, GOBP_OOGENESIS, GOBP_MALE_GAMETE_GENERATION, chr14q12, GOBP_SYNAPTONEMAL_COMPLEX_ORGANIZATION, GOBP_ANATOMICAL_STRUCTURE_MATURATION, GOBP_ORGANELLE_FISSION, GOBP_REPRODUCTIVE_SYSTEM_DEVELOPMENT, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_CELL_MATURATION
GO Biological Process (15): double-strand break repair via homologous recombination (GO:0000724), oocyte maturation (GO:0001556), double-strand break repair (GO:0006302), sister chromatid cohesion (GO:0007062), synaptonemal complex assembly (GO:0007130), reciprocal meiotic recombination (GO:0007131), male meiosis I (GO:0007141), spermatogenesis (GO:0007283), spermatid development (GO:0007286), fertilization (GO:0009566), meiotic sister chromatid cohesion (GO:0051177), meiotic cell cycle (GO:0051321), seminiferous tubule development (GO:0072520), chromosome segregation (GO:0007059), homologous chromosome pairing at meiosis (GO:0007129)
GO Molecular Function (2): chromatin binding (GO:0003682), protein binding (GO:0005515)
GO Cellular Component (12): kinetochore (GO:0000776), lateral element (GO:0000800), male germ cell nucleus (GO:0001673), nucleus (GO:0005634), meiotic cohesin complex (GO:0030893), chromosome, centromeric region (GO:0000775), condensed chromosome, centromeric region (GO:0000779), condensed chromosome (GO:0000793), condensed nuclear chromosome (GO:0000794), synaptonemal complex (GO:0000795), chromosome (GO:0005694), cohesin complex (GO:0008278)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Meiosis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| developmental process involved in reproduction | 2 |
| cell cycle process | 2 |
| chromosome organization involved in meiotic cell cycle | 2 |
| meiosis I | 2 |
| male gamete generation | 2 |
| sexual reproduction | 2 |
| reproductive process | 2 |
| binding | 2 |
| intracellular membraneless organelle | 2 |
| condensed chromosome | 2 |
| chromosome | 2 |
| recombinational repair | 1 |
| double-strand break repair | 1 |
| cell maturation | 1 |
| oocyte development | 1 |
| DNA repair | 1 |
| chromosome organization | 1 |
| homologous chromosome pairing at meiosis | 1 |
| cellular component assembly | 1 |
| synaptonemal complex organization | 1 |
| reciprocal homologous recombination | 1 |
| meiotic cell cycle process | 1 |
| male meiotic nuclear division | 1 |
| meiotic cell cycle | 1 |
| germ cell development | 1 |
| spermatid differentiation | 1 |
| sister chromatid cohesion | 1 |
| cell cycle | 1 |
| meiotic nuclear division | 1 |
| male gonad development | 1 |
| tube development | 1 |
| reproductive structure development | 1 |
| homologous chromosome segregation | 1 |
| condensed chromosome, centromeric region | 1 |
| supramolecular complex | 1 |
| synaptonemal complex | 1 |
| cellular anatomical structure | 1 |
| germ cell nucleus | 1 |
| intracellular membrane-bounded organelle | 1 |
| cohesin complex | 1 |
Protein interactions and networks
STRING
2380 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| REC8 | STAG3 | Q9UJ98 | 998 |
| REC8 | SMC1B | Q8NDV3 | 996 |
| REC8 | SMC3 | Q9UQE7 | 996 |
| REC8 | SGO2 | Q562F6 | 957 |
| REC8 | SMC1A | Q14683 | 955 |
| REC8 | STAG1 | Q8WVM7 | 946 |
| REC8 | RAD21L1 | Q9H4I0 | 941 |
| REC8 | PDS5A | Q29RF7 | 936 |
| REC8 | STAG2 | Q8N3U4 | 926 |
| REC8 | SGO1 | Q5FBB7 | 918 |
| REC8 | ESPL1 | Q14674 | 907 |
| REC8 | SPO11 | Q9Y5K1 | 907 |
| REC8 | HORMAD1 | Q86X24 | 838 |
| REC8 | SYCP3 | Q8IZU3 | 819 |
| REC8 | SYCP1 | Q15431 | 814 |
IntAct
17 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| REC8 | BAG2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| STUB1 | REC8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MLF1 | REC8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| REC8 | Hacd3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| REC8 | MLF2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PSMD2 | REC8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SGTA | REC8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| REC8 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| STIP1 | REC8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| REC8 | CACYBP | psi-mi:“MI:0915”(physical association) | 0.400 |
| AARSD1 | REC8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFDP1 | REC8 | psi-mi:“MI:0914”(association) | 0.350 |
| REC8 | HAX1 | psi-mi:“MI:0914”(association) | 0.350 |
| REC8 | RAD21 | psi-mi:“MI:0914”(association) | 0.350 |
| REC8 | PRORP | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (47): SMC1B (Affinity Capture-Western), FANCA (Affinity Capture-Luminescence), SMC3 (Affinity Capture-Western), SYCP3 (Affinity Capture-Western), REC8 (Affinity Capture-Western), REC8 (Positive Genetic), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), REC8 (Affinity Capture-MS), ISY1 (Affinity Capture-MS)
ESM2 similar proteins: A0JN53, A7MCY6, B0BMZ6, B5DF93, D3ZND0, G3X992, O13067, O60216, O93310, O95072, P18302, P98152, Q07266, Q0QWG9, Q15003, Q16643, Q28GV1, Q2YD98, Q3SWX9, Q3SZL8, Q3TC46, Q499E4, Q4V8I2, Q58DJ0, Q5JTD0, Q5R8Q4, Q5R8S0, Q5XIA0, Q61550, Q641G4, Q6AYG1, Q6AYJ4, Q6DG50, Q6IBW4, Q6NZQ0, Q6TEL1, Q7Z465, Q86TB9, Q8BSP2, Q8C156
Diamond homologs: A2AU37, D2HSB3, O60216, O93310, O95072, P30776, Q12158, Q3SWX9, Q61550, Q6TEL1, Q8W1Y0, Q9FQ19, Q9FQ20, Q9H4I0, Q9S7T7, Q6AYJ4, Q8C5S7, P36626, Q19325
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
48 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 21 |
| Likely benign | 2 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1328952 | NM_001048205.2(REC8):c.860_861del (p.Pro287fs) | Pathogenic |
| 1214013 | NM_001048205.2(REC8):c.1035_1036dup (p.Ala346fs) | Likely pathogenic |
| 1214014 | NM_001048205.2(REC8):c.624+1G>A | Likely pathogenic |
SpliceAI
2554 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:24172782:G:GG | donor_gain | 1.0000 |
| 14:24172783:T:G | donor_loss | 1.0000 |
| 14:24172897:A:AG | acceptor_gain | 1.0000 |
| 14:24172898:G:GG | acceptor_gain | 1.0000 |
| 14:24172898:GC:G | acceptor_gain | 1.0000 |
| 14:24173117:T:A | acceptor_gain | 1.0000 |
| 14:24173124:A:AG | acceptor_gain | 1.0000 |
| 14:24173125:G:GG | acceptor_gain | 1.0000 |
| 14:24173183:A:G | donor_gain | 1.0000 |
| 14:24173194:GAGCT:G | donor_gain | 1.0000 |
| 14:24173195:AGCT:A | donor_gain | 1.0000 |
| 14:24173196:GCT:G | donor_gain | 1.0000 |
| 14:24173196:GCTG:G | donor_gain | 1.0000 |
| 14:24173197:CT:C | donor_gain | 1.0000 |
| 14:24173197:CTGT:C | donor_loss | 1.0000 |
| 14:24173198:TGTG:T | donor_loss | 1.0000 |
| 14:24173199:G:GC | donor_loss | 1.0000 |
| 14:24173199:G:GG | donor_gain | 1.0000 |
| 14:24173200:TGAG:T | donor_loss | 1.0000 |
| 14:24173201:GAGT:G | donor_loss | 1.0000 |
| 14:24173407:CTCAG:C | donor_loss | 1.0000 |
| 14:24173408:TCAG:T | donor_loss | 1.0000 |
| 14:24173409:CAG:C | donor_loss | 1.0000 |
| 14:24173410:AGG:A | donor_loss | 1.0000 |
| 14:24173411:GG:G | donor_loss | 1.0000 |
| 14:24173412:GT:G | donor_loss | 1.0000 |
| 14:24173413:T:A | donor_loss | 1.0000 |
| 14:24175528:A:AG | acceptor_gain | 1.0000 |
| 14:24175529:A:G | acceptor_gain | 1.0000 |
| 14:24175540:A:G | acceptor_gain | 1.0000 |
AlphaMissense
3502 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:24172991:T:C | L73P | 1.000 |
| 14:24172999:G:C | G76R | 0.999 |
| 14:24172556:T:C | F2L | 0.998 |
| 14:24172558:C:A | F2L | 0.998 |
| 14:24172558:C:G | F2L | 0.998 |
| 14:24172607:T:A | W19R | 0.998 |
| 14:24172607:T:C | W19R | 0.998 |
| 14:24172967:T:C | F65S | 0.998 |
| 14:24172979:T:C | L69P | 0.998 |
| 14:24172991:T:A | L73H | 0.998 |
| 14:24173000:G:A | G76D | 0.998 |
| 14:24173012:T:A | V80D | 0.998 |
| 14:24172596:T:C | F15S | 0.997 |
| 14:24172715:T:C | L20P | 0.997 |
| 14:24172720:G:C | A22P | 0.997 |
| 14:24172984:G:C | A71P | 0.997 |
| 14:24172985:C:A | A71D | 0.997 |
| 14:24173000:G:T | G76V | 0.997 |
| 14:24173036:T:C | L88P | 0.997 |
| 14:24172975:T:G | Y68D | 0.996 |
| 14:24172999:G:T | G76C | 0.996 |
| 14:24172575:T:A | L8H | 0.995 |
| 14:24172595:T:C | F15L | 0.995 |
| 14:24172597:T:A | F15L | 0.995 |
| 14:24172597:T:G | F15L | 0.995 |
| 14:24172713:G:C | W19C | 0.995 |
| 14:24172713:G:T | W19C | 0.995 |
| 14:24172721:C:A | A22E | 0.995 |
| 14:24172746:G:C | K30N | 0.995 |
| 14:24172746:G:T | K30N | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000002146 (14:24176014 A>C,G), RS1000245282 (14:24170289 T>A,C), RS1001060945 (14:24171409 G>C), RS1001168914 (14:24174537 C>T), RS1001530873 (14:24176501 A>G), RS1001631235 (14:24180429 T>C), RS1001958948 (14:24176254 GC>G), RS1001965077 (14:24178817 T>C), RS1002563293 (14:24177520 G>A), RS1003647572 (14:24172030 A>C,G), RS1003864552 (14:24172261 C>G,T), RS1003913146 (14:24175906 T>A), RS1004306494 (14:24178204 A>G), RS1004454918 (14:24172101 C>A,G,T), RS1004506819 (14:24172420 C>A)
Disease associations
OMIM: gene MIM:608193 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| primary ovarian failure | Moderate | Autosomal recessive |
Mondo (3): premature menopause (MONDO:0001119), azoospermia (MONDO:0100459), primary ovarian failure (MONDO:0005387)
Orphanet (1): NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009391_2039 | Metabolite levels | 4.000000e-06 |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D053713 | Azoospermia | C12.100.500.430.380; C12.100.750.700.380; C12.200.294.430.380 |
| D008594 | Menopause, Premature | C12.050.351.500.056.630.250; C12.100.250.056.630.250; G08.686.157.500.500; G08.686.841.249.500.500 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases expression, increases methylation | 4 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Air Pollutants | affects methylation, increases abundance, affects expression | 2 |
| Nickel | increases expression | 2 |
| Tretinoin | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation, affects cotreatment | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Decitabine | increases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Vorinostat | decreases expression | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Carbamazepine | affects expression | 1 |
| Lipopolysaccharides | increases expression, affects response to substance | 1 |
| Mustard Gas | increases expression | 1 |
| Nitrogen Dioxide | affects methylation, increases abundance | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2PS | Abcam A-549 REC8 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
109 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT02307994 | PHASE4 | UNKNOWN | Clinical Research on Effectiveness and Safety of Treatment of Severe Oligospermia or Azoospermia With uFSH |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT02275169 | PHASE3 | UNKNOWN | FSH Treatment for Non-obstructive Azoospermic Patients |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT02544191 | PHASE2 | UNKNOWN | GnRHa Combined With hCG and hMG for Treatment of Patients With Non-obstructive Azoospermia |
| NCT03762967 | PHASE2 | UNKNOWN | Autologous Adipose-Derived Adult Stromal Vascular Cell Administration for Male Patients With Infertility |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
| NCT02043743 | PHASE1/PHASE2 | UNKNOWN | Autologous Stem Cells Transplantation in Patients With Idiopathic and Drug Induced Premature Ovarian Failure |
| NCT02062931 | PHASE1/PHASE2 | UNKNOWN | Autologous Mesenchymal Stem Cells Transplantation In Women With Premature Ovarian Failure |
| NCT02151890 | PHASE1/PHASE2 | COMPLETED | Pregnancy After Stem Cell Transplantation in Premature Ovarian Failure |
| NCT02372474 | PHASE1/PHASE2 | COMPLETED | It is a Real The First Baby Of Autologous Stem Cell Therapy in Premature Ovarian Failure |
| NCT02603744 | PHASE1/PHASE2 | UNKNOWN | Autologous Adipose Derived Mesenchymal Stromal Cells Transplantation in Women With Premature Ovarian Failure (POF) |
| NCT02644447 | PHASE1/PHASE2 | COMPLETED | Transplantation of HUC-MSCs With Injectable Collagen Scaffold for POF |
| NCT03069209 | PHASE1/PHASE2 | UNKNOWN | Autologous Bone Marrow-Derived Stem Cell Transplantation in Patients With Premature Ovarian Failure (POF) |
| NCT03985462 | PHASE1/PHASE2 | WITHDRAWN | Very Small Embryonic-like Stem Cells for Ovary |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT04071574 | PHASE1/PHASE2 | COMPLETED | Comparative Study on the Efficacy of Ovarian Stimulation Protocols on the Success Rate of ICSI in Female Infertility |
| NCT04922398 | PHASE1/PHASE2 | UNKNOWN | Ovarian Injection of PRP (Platelet -Rich Plasma) Vs Normal Saline in Premature Ovarian Insufficiency |
| NCT05462379 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Autologous Heterotopic Fresh Ovarian Graft in Woman With LACC Eligible for Pelvic Radiotherapy Treatment. |
| NCT06202547 | PHASE1/PHASE2 | UNKNOWN | Intra-ovarian Injection of MSC-EVs in Idiopathic Premature Ovarian Failure |
| NCT01129947 | EARLY_PHASE1 | WITHDRAWN | The Use of DHEA in Women With Premature Ovarian Failure |
| NCT05522634 | EARLY_PHASE1 | UNKNOWN | A Clinical Study of Chinese Herbal Compound TJAOA101 in the Treatment of Premature Ovarian Insufficiency |
| NCT07308327 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | The Influence of Gut Microbiota on Ovarian Function: A Single-center, Randomized,Double Blind, Parallel-controlled, Exploratory Clinical Trial |
Related Atlas pages
- Associated diseases: primary ovarian failure
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): azoospermia, premature menopause, primary ovarian failure