REL-DT

Summary

REL-DT (REL divergent transcript, HGNC:49572) is a long non-coding RNA gene on chromosome 2p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49572
Approved symbol	REL-DT
Name	REL divergent transcript
Location	2p16.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ16341
Ensembl gene	ENSG00000228414
Ensembl biotype	lncRNA
Entrez	400957
RNAcentral	URS00005C12D0 — lncRNA, 1705 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000439412, ENST00000452343, ENST00000701510, ENST00000748843, ENST00000748844, ENST00000748845, ENST00000748846, ENST00000748847, ENST00000748848, ENST00000748849, ENST00000748850, ENST00000748851

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439412 — 4 exons

Exon	Start	End
ENSE00001709799	60844057	60844226
ENSE00001735407	60856774	60856920
ENSE00001739943	60823069	60825285
ENSE00003880774	60881232	60881317

Expression profiles

Bgee: expression breadth broad, 80 present calls, max score 75.26.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2975 / max 15.2160, expressed in 143 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
28620	0.2975	143

Top tissues by expression

80 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.26	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.07	gold quality
skeletal muscle tissue	UBERON:0001134	52.01	silver quality
lung	UBERON:0002048	51.01	silver quality
leukocyte	CL:0000738	50.87	silver quality
prefrontal cortex	UBERON:0000451	50.81	silver quality
muscle tissue	UBERON:0002385	49.96	silver quality
monocyte	CL:0000576	49.75	silver quality
blood	UBERON:0000178	49.28	silver quality
lymph node	UBERON:0000029	48.97	silver quality
tibial nerve	UBERON:0001323	47.71	silver quality
tonsil	UBERON:0002372	47.62	gold quality
vermiform appendix	UBERON:0001154	47.28	gold quality
primary visual cortex	UBERON:0002436	47.23	silver quality
adult mammalian kidney	UBERON:0000082	46.90	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.61	silver quality
islet of Langerhans	UBERON:0000006	46.54	silver quality
kidney	UBERON:0002113	46.14	silver quality
superior frontal gyrus	UBERON:0002661	46.09	silver quality
muscle of leg	UBERON:0001383	46.01	silver quality
nucleus accumbens	UBERON:0001882	45.95	gold quality
frontal cortex	UBERON:0001870	45.18	silver quality
gall bladder	UBERON:0002110	44.76	silver quality
amygdala	UBERON:0001876	44.47	gold quality
anterior cingulate cortex	UBERON:0009835	44.38	gold quality
substantia nigra	UBERON:0002038	44.21	gold quality
putamen	UBERON:0001874	44.12	gold quality
stomach	UBERON:0000945	44.11	silver quality
caudate nucleus	UBERON:0001873	43.97	gold quality
brain	UBERON:0000955	43.91	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.