RELN
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Also known as RLPRO1598
Summary
RELN (reelin, HGNC:9957) is a protein-coding gene on chromosome 7q22.1, encoding Reelin (P78509). Extracellular matrix serine protease secreted by pioneer neurons that plays a role in layering of neurons in the cerebral cortex and cerebellum by coordinating cell positioning during neurodevelopment.
This gene encodes a large secreted extracellular matrix protein thought to control cell-cell interactions critical for cell positioning and neuronal migration during brain development. This protein may be involved in schizophrenia, autism, bipolar disorder, major depression and in migration defects associated with temporal lobe epilepsy. Mutations of this gene are associated with autosomal recessive lissencephaly with cerebellar hypoplasia. Two transcript variants encoding distinct isoforms have been identified for this gene. Other transcript variants have been described but their full length nature has not been determined.
Source: NCBI Gene 5649 — RefSeq curated summary.
At a glance
- Gene–disease (curated): lissencephaly with cerebellar hypoplasia (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 21
- Clinical variants (ClinVar): 3,712 total — 68 pathogenic, 39 likely-pathogenic
- Phenotypes (HPO): 80
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_005045
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9957 |
| Approved symbol | RELN |
| Name | reelin |
| Location | 7q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RL, PRO1598 |
| Ensembl gene | ENSG00000189056 |
| Ensembl biotype | protein_coding |
| OMIM | 600514 |
| Entrez | 5649 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 14 retained_intron, 3 protein_coding, 3 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay
ENST00000343529, ENST00000424685, ENST00000428762, ENST00000429186, ENST00000473457, ENST00000473945, ENST00000478148, ENST00000679371, ENST00000679689, ENST00000679867, ENST00000679952, ENST00000680248, ENST00000680706, ENST00000680712, ENST00000681034, ENST00000681182, ENST00000681199, ENST00000681315, ENST00000681364, ENST00000681401, ENST00000681921, ENST00000681931
RefSeq mRNA: 2 — MANE Select: NM_005045
NM_005045, NM_173054
CCDS: CCDS34722, CCDS47680
Canonical transcript exons
ENST00000428762 — 65 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001368017 | 103500745 | 103500922 |
| ENSE00001369491 | 103498077 | 103498252 |
| ENSE00001369922 | 103510851 | 103511005 |
| ENSE00001370228 | 103497820 | 103497926 |
| ENSE00001371835 | 103515185 | 103515441 |
| ENSE00001384462 | 103503016 | 103503230 |
| ENSE00001388019 | 103519323 | 103519516 |
| ENSE00001411170 | 103522022 | 103522199 |
| ENSE00001417076 | 103489742 | 103489899 |
| ENSE00001417391 | 103490668 | 103490829 |
| ENSE00001417999 | 103491953 | 103492026 |
| ENSE00001418589 | 103495723 | 103495898 |
| ENSE00001421020 | 103486197 | 103486416 |
| ENSE00001423585 | 103496526 | 103496768 |
| ENSE00002433253 | 103635425 | 103635586 |
| ENSE00002433492 | 103556977 | 103557159 |
| ENSE00002434757 | 103753182 | 103753214 |
| ENSE00002439350 | 103589596 | 103589828 |
| ENSE00002442576 | 103542731 | 103542878 |
| ENSE00002444364 | 103574092 | 103574299 |
| ENSE00002444629 | 103593682 | 103593882 |
| ENSE00002445259 | 103723140 | 103723191 |
| ENSE00002446145 | 103596456 | 103596661 |
| ENSE00002447610 | 103523391 | 103523531 |
| ENSE00002450856 | 103594321 | 103594492 |
| ENSE00002453374 | 103553660 | 103553831 |
| ENSE00002455254 | 103654093 | 103654205 |
| ENSE00002460435 | 103728111 | 103728207 |
| ENSE00002461437 | 103566601 | 103566759 |
| ENSE00002468234 | 103700910 | 103701006 |
| ENSE00002471017 | 103603304 | 103603490 |
| ENSE00002472313 | 103610695 | 103610807 |
| ENSE00002473681 | 103682116 | 103682261 |
| ENSE00002476573 | 103833537 | 103833672 |
| ENSE00002479065 | 103575548 | 103575705 |
| ENSE00002479504 | 103697853 | 103698093 |
| ENSE00002479556 | 103611611 | 103611803 |
| ENSE00002483711 | 103566224 | 103566412 |
| ENSE00002483853 | 103636235 | 103636468 |
| ENSE00002484629 | 103565278 | 103565551 |
| ENSE00002488877 | 103478389 | 103478394 |
| ENSE00002489998 | 103540197 | 103540455 |
| ENSE00002491367 | 103652551 | 103652759 |
| ENSE00002491484 | 103551067 | 103551296 |
| ENSE00002491587 | 103561813 | 103561953 |
| ENSE00002494169 | 103539078 | 103539327 |
| ENSE00002496767 | 103749426 | 103749504 |
| ENSE00002500169 | 103604346 | 103604483 |
| ENSE00002506569 | 103650274 | 103650383 |
| ENSE00002507959 | 103572184 | 103572260 |
| ENSE00002510114 | 103917075 | 103917185 |
| ENSE00002514020 | 103661376 | 103661527 |
| ENSE00002514474 | 103776557 | 103776627 |
| ENSE00002521067 | 103545124 | 103545344 |
| ENSE00002523441 | 103553461 | 103553563 |
| ENSE00002526992 | 103651661 | 103651789 |
| ENSE00002527436 | 103561532 | 103561709 |
| ENSE00002527586 | 103640543 | 103640609 |
| ENSE00002528830 | 103557965 | 103558049 |
| ENSE00002533387 | 103629940 | 103630176 |
| ENSE00003486932 | 103535316 | 103535484 |
| ENSE00003552620 | 103482873 | 103482971 |
| ENSE00003604440 | 103483653 | 103483850 |
| ENSE00003841765 | 103989131 | 103989658 |
| ENSE00003847243 | 103471789 | 103472908 |
Expression profiles
Bgee: expression breadth ubiquitous, 254 present calls, max score 99.09.
FANTOM5 (CAGE): breadth broad, TPM avg 7.1437 / max 397.1296, expressed in 592 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 85389 | 5.3904 | 532 |
| 85388 | 0.7178 | 289 |
| 85387 | 0.4446 | 245 |
| 85379 | 0.2450 | 61 |
| 85386 | 0.1221 | 67 |
| 204629 | 0.0990 | 22 |
| 85390 | 0.0646 | 15 |
| 204630 | 0.0603 | 14 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| olfactory bulb | UBERON:0002264 | 99.09 | gold quality |
| cerebellar vermis | UBERON:0004720 | 98.93 | gold quality |
| cerebellum | UBERON:0002037 | 98.62 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.60 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.58 | gold quality |
| paraflocculus | UBERON:0005351 | 98.38 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.28 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 98.07 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.07 | gold quality |
| endothelial cell | CL:0000115 | 94.91 | gold quality |
| tibial nerve | UBERON:0001323 | 94.09 | gold quality |
| pons | UBERON:0000988 | 94.07 | gold quality |
| sural nerve | UBERON:0015488 | 93.69 | gold quality |
| pancreatic ductal cell | CL:0002079 | 92.07 | silver quality |
| epithelial cell of pancreas | CL:0000083 | 91.89 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 89.59 | gold quality |
| entorhinal cortex | UBERON:0002728 | 89.49 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 89.47 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 89.45 | gold quality |
| liver | UBERON:0002107 | 89.31 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 89.23 | gold quality |
| decidua | UBERON:0002450 | 87.94 | gold quality |
| periodontal ligament | UBERON:0008266 | 87.40 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 87.09 | gold quality |
| vena cava | UBERON:0004087 | 86.95 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 85.56 | gold quality |
| buccal mucosa cell | CL:0002336 | 85.50 | silver quality |
| medial globus pallidus | UBERON:0002477 | 85.03 | gold quality |
| ventral tegmental area | UBERON:0002691 | 84.95 | gold quality |
| right lobe of liver | UBERON:0001114 | 84.89 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-2 | yes | 2159.52 |
| E-HCAD-5 | yes | 1605.66 |
| E-MTAB-8530 | yes | 473.98 |
| E-HCAD-9 | yes | 17.88 |
| E-MTAB-6701 | yes | 17.12 |
| E-CURD-46 | yes | 15.92 |
| E-MTAB-8410 | yes | 9.36 |
| E-ANND-3 | yes | 7.50 |
| E-MTAB-6108 | no | 209.37 |
| E-GEOD-124858 | no | 16.30 |
| E-MTAB-6678 | no | 3.54 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CXXC1, DNMT1, ESR1, FOXG1, FOXP1, FOXP2, HDAC1, KLF2, LHX1, MECP2, PAX6, PITX2, SNAI1, TBR1, TFCP2, TOP2B, ZBTB18, ZNF263
miRNA regulators (miRDB)
138 targeting RELN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Upregulation of reelin is associated with tumorigenesis of esophagus (PMID:11880184)
- a single nucleotide polymorphism at the 5’ promoter region is associated with schizophrenia (PMID:12082559)
- Decreased expression of reelin mRNA by hippocampal Cajal-Retzius cells correlates with the extent of migration defects in the dentate gyrus of patients with temporal lobe epilepsy (PMID:12122039)
- GGC polymorphism of the reelin gene is unlikely to be a major susceptibility factor in autism and/or genetic heterogeneity. (PMID:12192627)
- We found significant reductions in 410 kDa Reelin species in autistic twins, their fathers, mothers,and phenotypically normal siblings versus controls, suggesting that Reelin 410 deficiency may be a vulnerability factor in the pathology of autism. (PMID:12363196)
- reelin has a role in PI3-kinase signaling in neuronal growth cones, and in contributes to final neuron positioning in the mammalian brain by local modulation of protein kinase B and glycogen synthase kinase 3beta kinase activities (PMID:12376533)
- case-control and affected sib-pair findings did not support a role for RELN in susceptibility to ASD, family-based association study show that RELN alleles with larger numbers of CGG repeats may affect the etiology of autism without delayed phrase speech. (PMID:12399956)
- Increased levels of the 180-kDa isoform of reelin in the cerebrospinal fluid of patients with frontotemporal dementia and Alzheimer’s disease suggests the involvement of reelin signaling in neurodegenerative pathologies. (PMID:12645087)
- RELN and DAB1 coexpression in these neurons is necessary for both normal cortical development and mature function. (PMID:12834112)
- Study replicates findings of increased interstitial white matter neurons (IWMNs). density, and decreased reelin expression, in schizophrenia. The loss of reelin reflects, at least partly, its decreased expression by IWMNs. (PMID:12931209)
- The analysis of RELN suggests that it probably does not play a major role in autism aetiology (PMID:14515139)
- Reelin was detected in comparable concentrations in the CSF in children and adults, and varied largely from subject to subject with no obvious correlation with age or neurological disease state. (PMID:15006702)
- Our results are not consistent with a major role for Reelin alleles in liability to autism. (PMID:15048647)
- Our interpretation of these findings is that it is unlikely that DNA variations in RELN and WNT2 play a significant role in the genetic predisposition to autism. (PMID:15048648)
- Reelin might be an extracellular matrix molecule involved in the terminal innervation of the dentin-pulp complex, promoting adhesion between dental nerve endings and odontoblasts. (PMID:15464360)
- An association analysis of five single-nucleotide polymorphisms (SNPs) of reelin (RELN) and a repeat in the 5’-untranslated region (5’-UTR) were conducted. Results strongly suggest RELN is involved in autism susceptiblity. (PMID:15558079)
- In this review of the role of reelin during cerebral cortex development, specific emphasis is placed on the mechanisms by which the extracellular protein reelin regulates neuronal positioning at the end of migration. (PMID:15655250)
- In the adult human neocortex, reelin-i was widespread and present in intracellular locations in cortical neuron somata and in glial cells. (PMID:15690491)
- Dab1 regulates both cell surface expression and internalization of Reelin receptors (PMID:15718228)
- The mRNAs for Reln were reduced significantly in superior frontal and cerebellar areas of autistic brains. (PMID:15820235)
- promoter methylation is important for reduced expression of reelin in schizophrenia (PMID:15961543)
- Results weakly support an association of reelin gene variants with schizophrenia as a whole, yet suggest that reelin could be associated with treatment-resistant schizophrenia. (PMID:15965968)
- loss of Reelin results in a type of lissencephaly with severe cortical and cerebellar malformation [review] (PMID:16266828)
- High prevalence of the silencing of RELN pathway components and its reversal by histone deacetylase inhibitors suggest the importance of this pathway as a diagnostic and therapeutic target for pancreatic cancer. (PMID:16472607)
- Reelin signals by binding to two transmembrane receptors, apolipoprotein E receptor 2 (Apoer2) and very-low-density lipoprotein receptor. (PMID:16481437)
- We found no difference in the expression of DISC1 or reelin mRNA in schizophrenia and no association with previously identified risk DISC1 SNPs (PMID:16510495)
- 5’UTR of reelin gene may have a role in the susceptibility towards autism with the paternal transmission and non-transmission respectively of 10- and > or =11-repeat alleles, to the affected offspring. (PMID:16941662)
- The effect of Dab1 on APP and apoEr2 processing in transfected cells and primary neurons is reported. (PMID:16951405)
- our analysis produces a tentative model of the core region of the Reelin subrepeat sequences and suggests the presence in this 3D model of structural features common to polysaccharide-binding modules which are often found on proteoglycans (PMID:16979599)
- A statistically significant correlation between the levels of DNA methylation in RELN and age was detected in healthy individuals, no such correlations were seen in either schizophrenic or bipolar patients. (PMID:17310238)
- Alterations in Reelin processing or signaling may be involved in Alzheimer’s disease-related neuronal dysfunction. (PMID:17360894)
- The distribution of reelin in the primary visual cortex is different from other cortical areas examined; reelin is mostly present in the neurons of second and sixth layer. (PMID:17365098)
- homozygous balanced reciprocal translocations led to RELN gene inactivation (PMID:17431900)
- Structure of a recptor-binding fragment of reelin reveals a recognition mechanism simlar to endocytic recptors. (PMID:17548821)
- RELN seems to be a good candidate for autism susceptibility. (PMID:17621165)
- allelic variants of RELN may contribute to the endophenotypes of schizophrenia. (PMID:17684500)
- reelin binds to apoE receptors activating the PI3 K/Akt pathway causing phosphorylation of BAD which protects cells from apoptosis (PMID:17696989)
- The DNA methylation status of the promoter region of RELN was examined by using the pyrosequencing method in the prefrontal cortices of 14 patients with schizophrenia and 13 control subjects. (PMID:17870056)
- the possible involvement of RELN gene in the susceptibility to autistic spectrum disorder (PMID:17955477)
- found a female-specific association with rs7341475, a SNP in the fourth intron of the reelin (RELN) gene (p = 2.9 x 10(-5) in women with schizophrenia), with a significant gene-sex effect (p = 1.8 x 10(-4)) (PMID:18282107)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ENSDARG00000110545 | |
| danio_rerio | ENSDARG00000112431 | |
| mus_musculus | Reln | ENSMUSG00000042453 |
| rattus_norvegicus | Reln | ENSRNOG00000021441 |
Protein
Protein identifiers
Reelin — P78509 (reviewed: P78509)
All UniProt accessions (4): A0A7P0TA83, P78509, H7C2B0, J3KQ66
UniProt curated annotations — full annotation on UniProt →
Function. Extracellular matrix serine protease secreted by pioneer neurons that plays a role in layering of neurons in the cerebral cortex and cerebellum by coordinating cell positioning during neurodevelopment. Regulates microtubule function in neurons and neuronal migration. Binding to the extracellular domains of lipoprotein receptors VLDLR and LRP8/APOER2 induces tyrosine phosphorylation of DAB1 and modulation of TAU phosphorylation. Affects migration of sympathetic preganglionic neurons in the spinal cord, where it seems to act as a barrier to neuronal migration. Enzymatic activity is important for the modulation of cell adhesion.
Subunit / interactions. Oligomer of disulfide-linked homodimers.
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Tissue specificity. Abundantly produced during brain ontogenesis by the Cajal-Retzius cells and other pioneer neurons located in the telencephalic marginal zone and by granule cells of the external granular layer of the cerebellum. In adult brain, preferentially expressed in GABAergic interneurons of prefrontal cortices, temporal cortex, hippocampus and glutamatergic granule cells of cerebellum. Expression is reduced to about 50% in patients with schizophrenia. Also expressed in fetal and adult liver.
Post-translational modifications. N-glycosylated and to a lesser extent also O-glycosylated.
Disease relevance. Lissencephaly 2 (LIS2) [MIM:257320] A classic type lissencephaly associated with ataxia, intellectual disability, seizures and abnormalities of the cerebellum, hippocampus and brainstem. The disease is caused by variants affecting the gene represented in this entry. Epilepsy, familial temporal lobe, 7 (ETL7) [MIM:616436] A focal form of epilepsy characterized by recurrent seizures that arise from foci within the temporal lobe. Seizures are usually accompanied by sensory symptoms, most often auditory in nature. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The basic C-terminal region is essential for secretion.
Polymorphism. A polymorphic GGC triplet repeat located in the 5’-UTR region of RELN gene, which harbors in the normal population 8 to 10 repeats, is significantly increased in autistic patients to carry 4 to 23 additional repeats.
Similarity. Belongs to the reelin family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P78509-1 | 1 | yes |
| P78509-2 | 2 | |
| P78509-3 | 3 |
RefSeq proteins (2): NP_005036, NP_774959 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR002861 | Reeler_dom | Domain |
| IPR013111 | EGF_extracell | Domain |
| IPR034968 | Reelin | Family |
| IPR036278 | Sialidase_sf | Homologous_superfamily |
| IPR042307 | Reeler_sf | Homologous_superfamily |
| IPR049419 | Reelin_subrepeat-B | Repeat |
Pfam: PF07974, PF21471, PF23106
UniProt features (99 total): disulfide bond 32, glycosylation site 19, repeat 16, sequence variant 10, domain 9, binding site 7, splice variant 2, signal peptide 1, chain 1, sequence conflict 1, helix 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8G21 | SOLUTION NMR |
Predicted structure (AlphaFold)
No AlphaFold model available for P78509 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (7): 2060; 2073; 2178; 2263; 2396; 2398; 2459
Disulfide bonds (32): 40–126, 154–178, 539–580, 608–613, 674–684, 691–700, 894–936, 967–974, 1033–1043, 1050–1059, 1270–1309, 1338–1347, 1632–1672, 1701–1708, 2100, 2132–2142, 2136–2148, 2150–2159, 2194–2234, 2347–2386 …
Glycosylation sites (19): 140, 257, 289, 305, 628, 1266, 1599, 1749, 1920, 2144, 2268, 2316, 2568, 2961, 3015, 3072, 3184, 3411, 3438
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-8866376 | Reelin signalling pathway |
MSigDB gene sets: 529 (showing top):
GOBP_SPINAL_CORD_DEVELOPMENT, GOBP_DENDRITE_DEVELOPMENT, GOBP_MEMORY, GOBP_POSITIVE_REGULATION_OF_SYNAPTIC_TRANSMISSION_GLUTAMATERGIC, RRAGTTGT_UNKNOWN, GOBP_COGNITION, GOBP_BEHAVIOR, GOBP_REGULATION_OF_CELL_MORPHOGENESIS, HOFFMANN_SMALL_PRE_BII_TO_IMMATURE_B_LYMPHOCYTE_DN, GOBP_REGULATION_OF_PHOSPHORYLATION, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_SYNAPSE_ASSEMBLY, GOBP_REGULATION_OF_SYNAPTIC_TRANSMISSION_GLUTAMATERGIC, GOBP_ASSOCIATIVE_LEARNING, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP
GO Biological Process (51): cell morphogenesis (GO:0000902), neuron migration (GO:0001764), proteolysis (GO:0006508), cell adhesion (GO:0007155), axon guidance (GO:0007411), central nervous system development (GO:0007417), brain development (GO:0007420), long-term memory (GO:0007616), locomotory behavior (GO:0007626), associative learning (GO:0008306), glial cell differentiation (GO:0010001), regulation of gene expression (GO:0010468), positive regulation of neuron projection development (GO:0010976), dendrite development (GO:0016358), spinal cord patterning (GO:0021511), ventral spinal cord development (GO:0021517), hippocampus development (GO:0021766), cerebral cortex tangential migration (GO:0021800), layer formation in cerebral cortex (GO:0021819), positive regulation of TOR signaling (GO:0032008), protein localization to synapse (GO:0035418), reelin-mediated signaling pathway (GO:0038026), regulation of neuron differentiation (GO:0045664), response to pain (GO:0048265), regulation of behavior (GO:0050795), modulation of chemical synaptic transmission (GO:0050804), positive regulation of small GTPase mediated signal transduction (GO:0051057), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), positive regulation of synaptic transmission, glutamatergic (GO:0051968), radial glial cell differentiation (GO:0060019), regulation of synaptic activity (GO:0060025), long-term synaptic potentiation (GO:0060291), positive regulation of dendritic spine morphogenesis (GO:0061003), positive regulation of synapse maturation (GO:0090129), postsynaptic density assembly (GO:0097107), NMDA glutamate receptor clustering (GO:0097114), postsynaptic density protein 95 clustering (GO:0097119), receptor localization to synapse (GO:0097120), lateral motor column neuron migration (GO:0097477), positive regulation of long-term synaptic potentiation (GO:1900273)
GO Molecular Function (7): serine-type peptidase activity (GO:0008236), metal ion binding (GO:0046872), receptor ligand activity (GO:0048018), lipoprotein particle receptor binding (GO:0070325), very-low-density lipoprotein particle receptor binding (GO:0070326), peptidase activity (GO:0008233), hydrolase activity (GO:0016787)
GO Cellular Component (8): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), plasma membrane (GO:0005886), dendrite (GO:0030425), extracellular matrix (GO:0031012), neuron projection (GO:0043005), reelin complex (GO:0110157)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Axon guidance | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| anatomical structure development | 3 |
| neuron projection development | 2 |
| spinal cord development | 2 |
| signaling receptor binding | 2 |
| cellular anatomical structure | 2 |
| anatomical structure morphogenesis | 1 |
| cell migration | 1 |
| generation of neurons | 1 |
| protein metabolic process | 1 |
| cellular process | 1 |
| axonogenesis | 1 |
| neuron projection guidance | 1 |
| nervous system development | 1 |
| system development | 1 |
| central nervous system development | 1 |
| animal organ development | 1 |
| head development | 1 |
| memory | 1 |
| behavior | 1 |
| learning | 1 |
| cell differentiation | 1 |
| gliogenesis | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| regulation of neuron projection development | 1 |
| positive regulation of cell projection organization | 1 |
| regionalization | 1 |
| pallium development | 1 |
| limbic system development | 1 |
| cerebral cortex cell migration | 1 |
| cerebral cortex radial glia-guided migration | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| TOR signaling | 1 |
| regulation of TOR signaling | 1 |
| positive regulation of intracellular signal transduction | 1 |
| peptidase activity | 1 |
| serine hydrolase activity | 1 |
| cation binding | 1 |
| signal transduction | 1 |
| signaling receptor activator activity | 1 |
Protein interactions and networks
STRING
2260 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RELN | VLDLR | P98155 | 984 |
| RELN | LRP8 | Q14114 | 954 |
| RELN | TBR1 | Q16650 | 804 |
| RELN | PAFAH1B1 | P43034 | 709 |
| RELN | YWHAQ | P27348 | 706 |
| RELN | APOE | P02649 | 701 |
| RELN | STRADA | Q7RTN6 | 688 |
| RELN | CALB2 | P22676 | 682 |
| RELN | STK25 | O00506 | 650 |
| RELN | GOLGA2 | Q08379 | 650 |
| RELN | DAB1 | O75553 | 636 |
| RELN | GAD1 | Q99259 | 634 |
| RELN | FOXP2 | O15409 | 631 |
| RELN | SLIT3 | O75094 | 623 |
| RELN | MAPT | P10636 | 623 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| COPS5 | FBLL1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDH5 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CDH5 | MYO1C | psi-mi:“MI:2364”(proximity) | 0.270 |
| RSPH1 | RELN | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (40): RELN (Synthetic Lethality), RELN (Affinity Capture-RNA), LRP8 (Reconstituted Complex), VLDLR (Reconstituted Complex), LRP8 (Affinity Capture-Western), VLDLR (Affinity Capture-Western), RELN (Reconstituted Complex), RELN (Reconstituted Complex), RELN (Reconstituted Complex), RELN (Reconstituted Complex), VLDLR (Reconstituted Complex), RELN (Reconstituted Complex), RELN (Reconstituted Complex), RELN (Affinity Capture-Western), APP (Affinity Capture-Western)
ESM2 similar proteins: A2AJX4, E2RK30, F1LW30, F1QVU0, F8VQ03, F8W3R9, O08721, O60486, O70362, O89103, P08F94, P0DV84, P35969, P53767, P58751, P78509, P80108, P80109, P97793, Q0V8T0, Q0V8T5, Q0V8T6, Q0V8T9, Q5VYJ5, Q60841, Q61592, Q63772, Q6DFV8, Q6UXZ4, Q6ZN44, Q80YN4, Q8C0Z1, Q8IZJ1, Q8K1S2, Q8K1S4, Q8N2E2, Q8N8Z6, Q8R2H5, Q8WY21, Q8WYK1
Diamond homologs: O93574, P58751, P78509, Q60841, Q9N117, A2VE04, B3EWY9, B3EWZ8, C5IAW9, D3YXG0, E9Q6D8, F1LW30, G5ECS8, O08721, O08747, O60241, O60242, O95185, P07996, P11680, P27918, P35440, P35441, P35442, P35446, P35447, P48770, P59384, P61135, P97857, Q03350, Q1EHB3, Q28178, Q29RU4, Q3MHN2, Q3UTY6, Q4VC17, Q5R328, Q5R7Y0, Q5RBP8
SIGNOR signaling
8 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RELN | up-regulates | VLDLR | binding |
| TOP2B | “up-regulates quantity by expression” | RELN | “transcriptional regulation” |
| DNMT1 | “down-regulates quantity by repression” | RELN | “transcriptional regulation” |
| HDAC1 | “down-regulates quantity by repression” | RELN | “transcriptional regulation” |
| MECP2 | “down-regulates quantity by repression” | RELN | “transcriptional regulation” |
| KLF2 | “up-regulates quantity by expression” | RELN | “transcriptional regulation” |
| FOXP2 | “up-regulates quantity by expression” | RELN | “transcriptional regulation” |
| RELN | up-regulates | Synaptic_plasticity |
Disease & clinical
Clinical variants and AI predictions
ClinVar
3712 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 68 |
| Likely pathogenic | 39 |
| Uncertain significance | 1657 |
| Likely benign | 1312 |
| Benign | 262 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1074036 | NM_005045.4(RELN):c.3871C>T (p.Arg1291Ter) | Pathogenic |
| 1074751 | NM_005045.4(RELN):c.4190del (p.Asn1397fs) | Pathogenic |
| 130110 | NM_005045.4(RELN):c.5193C>A (p.Tyr1731Ter) | Pathogenic |
| 130111 | NM_005045.4(RELN):c.5195_5208dup (p.Ile1737fs) | Pathogenic |
| 130112 | NM_005045.4(RELN):c.7490+1G>A | Pathogenic |
| 1323526 | NM_005045.4(RELN):c.265del (p.Leu88_Val89insTer) | Pathogenic |
| 1338450 | NM_005045.4(RELN):c.3495G>A (p.Trp1165Ter) | Pathogenic |
| 1355125 | NM_005045.4(RELN):c.4639C>T (p.Arg1547Ter) | Pathogenic |
| 1363442 | NM_005045.4(RELN):c.8047G>T (p.Glu2683Ter) | Pathogenic |
| 1371832 | NM_005045.4(RELN):c.4510A>T (p.Arg1504Ter) | Pathogenic |
| 1377194 | NM_005045.4(RELN):c.3378G>A (p.Trp1126Ter) | Pathogenic |
| 1388018 | NM_005045.4(RELN):c.4904_4905insA (p.Met1635fs) | Pathogenic |
| 1397755 | NM_005045.4(RELN):c.6474del (p.Cys2159fs) | Pathogenic |
| 1447834 | NM_005045.4(RELN):c.2364del (p.Asp789fs) | Pathogenic |
| 1457198 | NM_005045.4(RELN):c.4449_4450del (p.Tyr1484fs) | Pathogenic |
| 1691105 | NM_005045.4(RELN):c.204C>G (p.Tyr68Ter) | Pathogenic |
| 199432 | NM_005045.4(RELN):c.2392C>A (p.His798Asn) | Pathogenic |
| 199433 | NM_005045.4(RELN):c.8347G>T (p.Gly2783Cys) | Pathogenic |
| 199434 | NM_005045.4(RELN):c.2288A>G (p.Asp763Gly) | Pathogenic |
| 1998872 | NM_005045.4(RELN):c.6338_6342dup (p.Gly2115fs) | Pathogenic |
| 2009258 | NM_005045.4(RELN):c.2896G>T (p.Glu966Ter) | Pathogenic |
| 2024605 | NM_005045.4(RELN):c.6574C>T (p.Arg2192Ter) | Pathogenic |
| 2036010 | NM_005045.4(RELN):c.5455del (p.Glu1819fs) | Pathogenic |
| 2086135 | NM_005045.4(RELN):c.5489del (p.Gly1830fs) | Pathogenic |
| 2091447 | NM_005045.4(RELN):c.5115del (p.Ile1706fs) | Pathogenic |
| 2116963 | NM_005045.4(RELN):c.1475del (p.Asn492fs) | Pathogenic |
| 212035 | NM_005045.4(RELN):c.329dup (p.Gly111fs) | Pathogenic |
| 212041 | NM_005045.4(RELN):c.5587C>T (p.Gln1863Ter) | Pathogenic |
| 225550 | NM_005045.4(RELN):c.5969+1G>A | Pathogenic |
| 2425283 | NC_000007.13:g.(?103389853)(103474139_?)del | Pathogenic |
SpliceAI
9821 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:103482871:A:AC | donor_gain | 1.0000 |
| 7:103482872:C:CC | donor_gain | 1.0000 |
| 7:103483651:A:AC | donor_gain | 1.0000 |
| 7:103483652:C:CG | donor_gain | 1.0000 |
| 7:103483652:CA:C | donor_gain | 1.0000 |
| 7:103483652:CAG:C | donor_gain | 1.0000 |
| 7:103483652:CAGG:C | donor_gain | 1.0000 |
| 7:103483680:G:C | donor_gain | 1.0000 |
| 7:103483692:T:TA | donor_gain | 1.0000 |
| 7:103483825:CAATT:C | acceptor_gain | 1.0000 |
| 7:103483829:T:C | acceptor_gain | 1.0000 |
| 7:103483829:T:TC | acceptor_gain | 1.0000 |
| 7:103483846:TTTTG:T | acceptor_gain | 1.0000 |
| 7:103483847:TTTG:T | acceptor_gain | 1.0000 |
| 7:103483848:TTG:T | acceptor_gain | 1.0000 |
| 7:103486304:T:TA | donor_gain | 1.0000 |
| 7:103489895:TTGCA:T | acceptor_gain | 1.0000 |
| 7:103489897:GCAC:G | acceptor_loss | 1.0000 |
| 7:103489898:CA:C | acceptor_gain | 1.0000 |
| 7:103489900:C:CA | acceptor_loss | 1.0000 |
| 7:103489900:C:CC | acceptor_gain | 1.0000 |
| 7:103489901:T:G | acceptor_loss | 1.0000 |
| 7:103489910:C:CT | acceptor_gain | 1.0000 |
| 7:103490662:ACCTA:A | donor_loss | 1.0000 |
| 7:103490667:C:CG | donor_loss | 1.0000 |
| 7:103490825:CCGAT:C | acceptor_gain | 1.0000 |
| 7:103490826:CGAT:C | acceptor_gain | 1.0000 |
| 7:103490826:CGATC:C | acceptor_gain | 1.0000 |
| 7:103490827:GAT:G | acceptor_gain | 1.0000 |
| 7:103490829:TCT:T | acceptor_loss | 1.0000 |
AlphaMissense
22961 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:103482899:C:A | W3418C | 1.000 |
| 7:103482899:C:G | W3418C | 1.000 |
| 7:103482901:A:G | W3418R | 1.000 |
| 7:103482901:A:T | W3418R | 1.000 |
| 7:103482938:C:A | W3405C | 1.000 |
| 7:103482938:C:G | W3405C | 1.000 |
| 7:103482940:A:G | W3405R | 1.000 |
| 7:103482940:A:T | W3405R | 1.000 |
| 7:103482942:C:G | R3404P | 1.000 |
| 7:103483752:A:G | L3361P | 1.000 |
| 7:103486331:C:A | W3283C | 1.000 |
| 7:103486331:C:G | W3283C | 1.000 |
| 7:103486333:A:G | W3283R | 1.000 |
| 7:103486333:A:T | W3283R | 1.000 |
| 7:103486406:G:C | C3258W | 1.000 |
| 7:103489766:A:G | C3247R | 1.000 |
| 7:103489800:G:C | C3235W | 1.000 |
| 7:103489802:A:G | C3235R | 1.000 |
| 7:103489883:A:G | W3208R | 1.000 |
| 7:103489883:A:T | W3208R | 1.000 |
| 7:103490709:C:A | W3188C | 1.000 |
| 7:103490709:C:G | W3188C | 1.000 |
| 7:103495875:A:G | W3073R | 1.000 |
| 7:103495875:A:T | W3073R | 1.000 |
| 7:103496660:C:G | R3020P | 1.000 |
| 7:103500766:G:C | C2882W | 1.000 |
| 7:103515345:C:A | W2653C | 1.000 |
| 7:103515345:C:G | W2653C | 1.000 |
| 7:103515347:A:G | W2653R | 1.000 |
| 7:103515347:A:T | W2653R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000001802 (7:103514188 T>A), RS1000020783 (7:103474004 A>AGAG), RS1000030000 (7:103782272 T>A,C), RS1000030885 (7:103731959 A>G,T), RS1000040022 (7:103808825 G>A), RS1000051835 (7:103776504 A>G,T), RS1000060066 (7:103599029 C>A,T), RS1000060100 (7:103918099 T>C), RS1000061117 (7:103536347 C>G), RS1000069302 (7:103924651 C>T), RS1000069505 (7:103618616 A>G), RS1000072283 (7:103577720 A>G), RS1000076514 (7:103961673 G>A), RS1000077891 (7:103639382 TC>T), RS1000077900 (7:103618273 A>G)
Disease associations
OMIM: gene MIM:600514 | disease phenotypes: MIM:257320, MIM:616436, MIM:600512, MIM:117100, MIM:607432, MIM:604403, MIM:181500, MIM:108100
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Norman-Roberts syndrome | Definitive | Autosomal recessive |
| familial temporal lobe epilepsy 7 | Strong | Autosomal dominant |
| autosomal dominant epilepsy with auditory features | Supportive | Autosomal dominant |
| ankylosing spondylitis | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| lissencephaly with cerebellar hypoplasia | Definitive | AR |
| complex neurodevelopmental disorder | Disputed | AD |
Mondo (17): Norman-Roberts syndrome (MONDO:0009760), familial temporal lobe epilepsy 7 (MONDO:0014639), epilepsy, familial temporal lobe, 1 (MONDO:0700090), epilepsy (MONDO:0005027), self-limited epilepsy with centrotemporal spikes (MONDO:0007295), intellectual disability (MONDO:0001071), lissencephaly spectrum disorders (MONDO:0018838), generalized epilepsy with febrile seizures plus, type 2 (MONDO:0011461), neurodevelopmental disorder (MONDO:0700092), schizophrenia (MONDO:0005090), synovitis (MONDO:0002400), scoliosis (MONDO:0005392), arthritic joint disease (MONDO:0005578), arthritis, sacroiliac (MONDO:0007156), enthesitis (MONDO:0024419)
Orphanet (7): Epilepsy with auditory features (Orphanet:101046), Lissencephaly syndrome, Norman-Roberts type (Orphanet:89844), Self-limited epilepsy with centrotemporal spikes (Orphanet:1945), Lissencephaly (Orphanet:48471), Genetic epilepsy with febrile seizure plus (Orphanet:36387), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
80 total (30 of 80 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000269 | Prominent occiput |
| HP:0000308 | Microretrognathia |
| HP:0000316 | Hypertelorism |
| HP:0000340 | Sloping forehead |
| HP:0000341 | Narrow forehead |
| HP:0000350 | Small forehead |
| HP:0000369 | Low-set ears |
| HP:0000426 | Prominent nasal bridge |
| HP:0000431 | Wide nasal bridge |
| HP:0000445 | Wide nose |
| HP:0000479 | Abnormal retinal morphology |
| HP:0000708 | Atypical behavior |
| HP:0000716 | Depression |
| HP:0001004 | Lymphedema |
| HP:0001181 | Adducted thumb |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001274 | Agenesis of corpus callosum |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001339 | Lissencephaly |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001631 | Atrial septal defect |
| HP:0001655 | Patent foramen ovale |
GWAS associations
21 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000155_1 | Schizophrenia | 9.000000e-07 |
| GCST000267_3 | Multiple sclerosis (age of onset) | 3.000000e-06 |
| GCST000345_1 | Otosclerosis | 2.000000e-08 |
| GCST000676_1 | Alzheimer’s disease | 2.000000e-06 |
| GCST002118_20 | Metabolite levels (Pyroglutamine) | 8.000000e-06 |
| GCST003542_194 | Night sleep phenotypes | 3.000000e-06 |
| GCST004061_6 | Sjögren’s syndrome | 3.000000e-07 |
| GCST004068_40 | Venous thromboembolism adjusted for sickle cell variant rs77121243-T | 4.000000e-07 |
| GCST006412_68 | Intraocular pressure | 5.000000e-09 |
| GCST006867_60 | Type 2 diabetes | 1.000000e-08 |
| GCST007565_177 | Morning person | 2.000000e-14 |
| GCST008522_42 | Bitter alcoholic beverage consumption | 3.000000e-09 |
| GCST008761_1 | Sucrose liking | 9.000000e-06 |
| GCST009276_7 | Response to placebo treatment in childhood asthma (FVC change) | 3.000000e-06 |
| GCST009379_73 | Type 2 diabetes | 7.000000e-06 |
| GCST009379_74 | Type 2 diabetes | 4.000000e-08 |
| GCST010988_165 | Adult body size | 5.000000e-15 |
| GCST010989_123 | Body size at age 10 | 3.000000e-11 |
| GCST010989_124 | Body size at age 10 | 5.000000e-10 |
| GCST012319_6 | LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder | 1.000000e-06 |
| GCST012796_6 | Sjögren’s syndrome | 9.000000e-06 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004847 | age at onset |
| EFO:0005408 | pyroglutamine measurement |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0008328 | chronotype measurement |
| EFO:0010092 | bitter alcoholic beverage consumption measurement |
| EFO:0010157 | sucrose liking measurement |
| EFO:0008344 | response to placebo |
| EFO:0010339 | FVC change measurement |
| EFO:0009819 | comparative body size at age 10, self-reported |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
MeSH disease descriptors (11)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001168 | Arthritis | C05.550.114 |
| D004827 | Epilepsy | C10.228.140.490 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D054082 | Lissencephaly | C10.500.507.450.499; C16.131.666.507.450.499 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D012600 | Scoliosis | C05.116.900.800.875 |
| D013167 | Spondylitis, Ankylosing | C05.116.900.853.625.800.744.500; C05.550.069.340.500; C05.550.114.865.800.744.500 |
| D013585 | Synovitis | C05.550.870 |
| C563037 | Arthritis, Sacroiliac (supp.) | |
| C537297 | Autosomal Dominant Lateral Temporal Lobe Epilepsy (supp.) | |
| C565810 | Generalized Epilepsy With Febrile Seizures Plus, Type 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
13 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs362719 | RELN | 0.00 | 0 | ||
| rs2237628 | RELN | 0.00 | 0 | ||
| rs2535764 | RELN | 0.00 | 0 | ||
| rs362626 | RELN | 0.00 | 0 | ||
| rs362726 | RELN | 0.00 | 0 | ||
| rs362731 | RELN | 0.00 | 0 | ||
| rs362814 | RELN | 0.00 | 0 | ||
| rs3808035 | RELN | 0.00 | 0 | ||
| rs3819479 | RELN | 0.00 | 0 | ||
| rs7341475 | RELN | 0.00 | 0 | ||
| rs12705169 | RELN | 0.00 | 0 | ||
| rs362813 | RELN | 0.00 | 0 | ||
| rs39339 | RELN | 0.00 | 0 |
CTD chemical–gene interactions
74 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases methylation, affects cotreatment, increases expression, affects expression, decreases expression | 9 |
| Benzo(a)pyrene | affects expression, affects methylation, decreases expression, decreases methylation | 6 |
| bisphenol A | affects expression, affects cotreatment, increases methylation, increases expression | 3 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| arsenite | affects binding, decreases reaction, decreases methylation | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| Resveratrol | increases expression, affects cotreatment, decreases expression | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Doxorubicin | affects binding, decreases reaction, increases expression, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Aflatoxin B1 | affects cotreatment, decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| peracetylated N-azidoacetylmannosamine | decreases expression | 1 |
| Esketamine | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| sodium arsenite | affects methylation | 1 |
| cobaltous chloride | decreases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| benzo(k)fluoranthene | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| periodate-oxidized adenosine | affects expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| tetrachlorodian | increases expression | 1 |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00133315 | PHASE4 | COMPLETED | TNFalfa Blocking Treatment of Spondylarthropathies |
| NCT00247962 | PHASE4 | COMPLETED | Study Evaluating Etanercept and Sulphasalazine in Ankylosing Spondylitis |
| NCT00410046 | PHASE4 | COMPLETED | Extension Study Evaluating Etanercept in Ankylosing Spondylitis |
| NCT00420238 | PHASE4 | COMPLETED | Study Evaluating Etanercept for the Treatment of Active, Severe, and Advanced Axial Ankylosing Spondylitis |
| NCT00432432 | PHASE4 | COMPLETED | Combination Methotrexate and Infliximab |
| NCT00444340 | PHASE4 | COMPLETED | An Open-Label Multicentre Long-Term Extension Study of Etanercept for Ankylosing Spondylitis |
| NCT00458185 | PHASE4 | COMPLETED | Study Evaluating Etanercept in Patients With Ankylosing Spondylitis |
| NCT00507403 | PHASE4 | COMPLETED | Infliximab and Methotrexate in Ankylosing Spondylitis |
| NCT00647517 | PHASE4 | COMPLETED | Tramadol/Acetaminophen(Ultracet) AS add-on Therapy in the Treatment of Patients With Ankylosing Spondylitis |
| NCT00715091 | PHASE4 | COMPLETED | Effects of Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) on RAdiographic Damage in Ankylosing Spondylitis |
| NCT00873730 | PHASE4 | COMPLETED | Study Evaluating Etanercept in Subjects With Ankylosing Spondylitis in Spain |
| NCT00910273 | PHASE4 | TERMINATED | Effects of Etanercept on the Heart, Veins and Thickness of Certain Major Arteries In Ankylosing Spondylitis Patients |
| NCT00953979 | PHASE4 | COMPLETED | Efficacy and Safety of Kunxian Capsule in Treatment Patients With Early Ankylosing Spondylitis |
| NCT01148901 | PHASE4 | WITHDRAWN | Effectiveness and Safety of Early Treatment With Infliximab for Hip Arthritis Associated With Ankylosing Spondylitis (AS) (P06451) |
| NCT01212653 | PHASE4 | COMPLETED | Effect of Anti-TNF (Alpha) Treatment on Vascular Stiffness in Ankylosing Spondylitis (AS) |
| NCT01422564 | PHASE4 | TERMINATED | Metal on Metal Versus Metal on Highly Crossed Linked Polyethylene Sytem |
| NCT01517620 | PHASE4 | COMPLETED | Total Glucosides Paeony Capsules in Maintaining Clinical Remission in Patients With Ankylosing Spondylitis Which Achieve Clinical Remission After Anti-TNF Therapy |
| NCT01668004 | PHASE4 | COMPLETED | The Incidence of Extra-Articular Manifestations in Participants With Ankylosing Spondylitis Treated With Golimumab (MK-8259-012) |
| NCT01895764 | PHASE4 | COMPLETED | Effect of the Combination of Methotrexate and Adalimumab on Reduction of Immunization in Ankylosing Spondylitis (COMARIS) |
| NCT01934933 | PHASE4 | COMPLETED | Etanercept and Celecoxib Alone/Combined Treatment in Effectiveness and Safety of Active Ankylosing Spondylitis |
| NCT02132234 | PHASE4 | UNKNOWN | Effects of Biological Treatment on Blood Pressure and Endothelial Function in Patients With Rheumatoid Arthritis, Psoriatic Arthritis and Ankylosing Spondylitis |
| NCT02313727 | PHASE4 | UNKNOWN | Combined Treatment With TNF Inhibitor and Pamidronate in AS Patients: Effect on the Radiographic Progression |
| NCT02489760 | PHASE4 | UNKNOWN | Etanercept Versus Adalimumab in the Treatment of Patients With Ankylosing Spondylitis. A Switch Study |
| NCT02492217 | PHASE4 | COMPLETED | Biomarkers Identification of Anti-tumor Necrosis Factor (TNF) α Agent’s Efficacy in Ankylosing Spondylitis Patients |
| NCT02528201 | PHASE4 | COMPLETED | A Study Of Celecoxib Versus Diclofenac In Patients With Ankylosing Spondylitis |
| NCT02638896 | PHASE4 | UNKNOWN | Dose Reduction of Etanercept in Patients With Ankylosing Spondylitis |
| NCT02758782 | PHASE4 | COMPLETED | NSAIDs Added to Anti-TNF Therapy Versus Anti-TNF Therapy Alone on Progression of Structural Damage in Ankylosing Spondylitis |
| NCT02763046 | PHASE4 | COMPLETED | Study to Examine the Clinical Efficacy and the Nonsteroidal Anti-inflammatory Drug (NSAID)-Sparing Effect of Secukinumab Over 16 Weeks in Patients With Ankylosing Spondylitis |
| NCT03350815 | PHASE4 | COMPLETED | Study Estimating the Clinical Difference Between 300 mg and 150 mg of Secukinumab Following Dose Escalation to 300 mg in Patients With Ankylosing Spondylitis |
| NCT03411798 | PHASE4 | COMPLETED | Sequential Application of Yisaipu® and DMARDs in Treating Mild-to-Moderate AS |
| NCT03473665 | PHASE4 | TERMINATED | Non-Steroidal Anti-inflammatory Drugs in Axial Spondyloarthritis |
| NCT03639740 | PHASE4 | UNKNOWN | Treat-to-target With Secukinumab in Axial Spondyloarthritis |
| NCT03800797 | PHASE4 | COMPLETED | Efficacy and Safety of Loxoprofen Hydrogel Patch in Patients With Ankylosing Spondylitis |
| NCT03932006 | PHASE4 | UNKNOWN | A Multicenter,Double-Blind and Randomized Controlled Trial of Fengshigutong Capsule in the Treatment of Ankylosing Spondylitis |
| NCT04077957 | PHASE4 | UNKNOWN | Treat-to-target Strategy in Ankylosing Spondylitis Using Etanercept and Conventional Synthetic DMARDs |
| NCT04885751 | PHASE4 | UNKNOWN | Compare the Effect of Eupatilin and Rebamipide on the Prevention of Gastroenteropathy |
| NCT04934059 | PHASE4 | UNKNOWN | Efficacy and Safety of Yuxuebi Tablet in Treating Night Pain of Ankylosing Spondylitis (AS). |
| NCT05164198 | PHASE4 | UNKNOWN | REduCed Dose of TNFi in Patients With Ankylosing SpondyliTis (RECAST) |
| NCT05303285 | PHASE4 | RECRUITING | A Study Evaluating the Efficacy of Secukinumab 300mg in Chinese Adults With Active Ankylosing Spondylitis |
| NCT05527444 | PHASE4 | UNKNOWN | The Clinical Efficacy and the Changes of Immune Cells Subsets With Bioagents in Ankylosing Spondylitis Patients |
Related Atlas pages
- Associated diseases: ankylosing spondylitis, Norman-Roberts syndrome, familial temporal lobe epilepsy 7, autosomal dominant epilepsy with auditory features, complex neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ankylosing spondylitis, arthritic joint disease, arthritis, sacroiliac, autosomal dominant epilepsy with auditory features, enthesitis, epilepsy, familial temporal lobe, 1, familial temporal lobe epilepsy 7, generalized epilepsy with febrile seizures plus, type 2, lissencephaly spectrum disorders, Norman-Roberts syndrome, otosclerosis, schizophrenia, scoliosis, self-limited epilepsy with centrotemporal spikes, Sjogren syndrome, synovitis