RERG-IT1

Summary

RERG-IT1 (RERG intronic transcript 1, HGNC:39991) is a long non-coding RNA gene on chromosome 12p12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39991
Approved symbol	RERG-IT1
Name	RERG intronic transcript 1
Location	12p12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256650
Ensembl biotype	lncRNA
Entrez	100874290
RNAcentral	URS00026A1C22 — lncRNA, 224 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000539734

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000539734 — 2 exons

Exon	Start	End
ENSE00002246935	15112363	15112469
ENSE00002256131	15114505	15114698

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 87.67.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0111 / max 13.6955, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
129919	0.0111	3

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left uterine tube	UBERON:0001303	87.67	gold quality
body of uterus	UBERON:0009853	87.44	gold quality
right uterine tube	UBERON:0001302	85.38	gold quality
myometrium	UBERON:0001296	84.20	gold quality
fallopian tube	UBERON:0003889	81.34	gold quality
smooth muscle tissue	UBERON:0001135	80.60	gold quality
subcutaneous adipose tissue	UBERON:0002190	77.01	gold quality
thoracic mammary gland	UBERON:0005200	76.81	gold quality
right adrenal gland cortex	UBERON:0035827	76.56	gold quality
popliteal artery	UBERON:0002250	76.36	gold quality
tibial artery	UBERON:0007610	76.36	gold quality
descending thoracic aorta	UBERON:0002345	76.14	gold quality
right ovary	UBERON:0002118	75.72	gold quality
left adrenal gland cortex	UBERON:0035825	75.69	gold quality
calcaneal tendon	UBERON:0003701	75.12	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.75	gold quality
muscle layer of sigmoid colon	UBERON:0035805	74.73	gold quality
fundus of stomach	UBERON:0001160	74.63	gold quality
left ovary	UBERON:0002119	74.56	gold quality
left adrenal gland	UBERON:0001234	74.48	gold quality
mucosa of stomach	UBERON:0001199	74.44	gold quality
thoracic aorta	UBERON:0001515	74.36	gold quality
right adrenal gland	UBERON:0001233	74.31	gold quality
ovary	UBERON:0000992	73.98	gold quality
ascending aorta	UBERON:0001496	73.97	gold quality
hindlimb stylopod muscle	UBERON:0004252	73.79	gold quality
adrenal gland	UBERON:0002369	73.17	gold quality
adipose tissue	UBERON:0001013	72.95	gold quality
uterine cervix	UBERON:0000002	71.83	gold quality
ectocervix	UBERON:0012249	71.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.