RETSAT
gene geneOn this page
Also known as FLJ20296
Summary
RETSAT (retinol saturase, HGNC:25991) is a protein-coding gene on chromosome 2p11.2, encoding All-trans-retinol 13,14-reductase (Q6NUM9). Catalyzes the saturation of all-trans-retinol to all-trans-13,14-dihydroretinol.
Predicted to enable all-trans-retinol 13,14-reductase activity. Predicted to be involved in retinol metabolic process. Located in membrane.
Source: NCBI Gene 54884 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 145 total
- MANE Select transcript:
NM_017750
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25991 |
| Approved symbol | RETSAT |
| Name | retinol saturase |
| Location | 2p11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20296 |
| Ensembl gene | ENSG00000042445 |
| Ensembl biotype | protein_coding |
| OMIM | 617597 |
| Entrez | 54884 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 15 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000295802, ENST00000409984, ENST00000429806, ENST00000438611, ENST00000449375, ENST00000482694, ENST00000490291, ENST00000910001, ENST00000910002, ENST00000910003, ENST00000910004, ENST00000910005, ENST00000910006, ENST00000910007, ENST00000910008, ENST00000910009, ENST00000910010, ENST00000942520, ENST00000942521
RefSeq mRNA: 1 — MANE Select: NM_017750
NM_017750
CCDS: CCDS1972
Canonical transcript exons
ENST00000295802 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001004539 | 85343999 | 85344165 |
| ENSE00001004540 | 85345975 | 85346094 |
| ENSE00001004541 | 85350040 | 85350241 |
| ENSE00001275092 | 85350780 | 85351021 |
| ENSE00001275099 | 85351680 | 85351862 |
| ENSE00001303755 | 85349384 | 85349581 |
| ENSE00001829317 | 85354336 | 85354528 |
| ENSE00003609958 | 85344239 | 85344348 |
| ENSE00003671743 | 85343639 | 85343798 |
| ENSE00003679509 | 85341955 | 85343381 |
| ENSE00003681388 | 85344594 | 85344732 |
Expression profiles
Bgee: expression breadth ubiquitous, 284 present calls, max score 98.02.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.6050 / max 475.0742, expressed in 1797 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 29394 | 14.1070 | 1781 |
| 29395 | 3.2402 | 1422 |
| 29397 | 0.8383 | 454 |
| 29396 | 0.4195 | 196 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 98.02 | gold quality |
| ileal mucosa | UBERON:0000331 | 97.94 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.79 | gold quality |
| rectum | UBERON:0001052 | 97.42 | gold quality |
| duodenum | UBERON:0002114 | 97.24 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 97.21 | gold quality |
| adipose tissue | UBERON:0001013 | 97.19 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 96.52 | gold quality |
| right adrenal gland | UBERON:0001233 | 96.43 | gold quality |
| left adrenal gland | UBERON:0001234 | 96.37 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 96.21 | gold quality |
| connective tissue | UBERON:0002384 | 96.17 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 96.17 | gold quality |
| transverse colon | UBERON:0001157 | 96.11 | gold quality |
| omental fat pad | UBERON:0010414 | 96.06 | gold quality |
| peritoneum | UBERON:0002358 | 96.02 | gold quality |
| adrenal cortex | UBERON:0001235 | 95.97 | gold quality |
| colonic mucosa | UBERON:0000317 | 95.92 | gold quality |
| right lobe of liver | UBERON:0001114 | 95.75 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 95.72 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 95.61 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 95.58 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 95.46 | gold quality |
| small intestine | UBERON:0002108 | 95.42 | gold quality |
| adrenal gland | UBERON:0002369 | 95.28 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.23 | gold quality |
| thyroid gland | UBERON:0002046 | 94.82 | gold quality |
| skin of leg | UBERON:0001511 | 94.64 | gold quality |
| muscle of leg | UBERON:0001383 | 94.61 | gold quality |
| skin of abdomen | UBERON:0001416 | 94.58 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): PPARA
miRNA regulators (miRDB)
59 targeting RETSAT, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-204-5P | 99.79 | 71.62 | 2439 |
| HSA-MIR-211-5P | 99.79 | 71.65 | 2440 |
| HSA-MIR-623 | 99.76 | 68.16 | 1170 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-105-5P | 99.54 | 69.24 | 2060 |
| HSA-MIR-7853-5P | 99.54 | 69.30 | 2055 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-21-5P | 99.46 | 70.54 | 1035 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-190B-3P | 99.33 | 68.29 | 1382 |
| HSA-MIR-590-5P | 99.25 | 70.76 | 930 |
Literature-anchored findings (GeneRIF, showing 3)
- RetSat plays an important role in the biology of adipocytes, where it favors normal differentiation, yet is reduced in the obese state. (PMID:19139408)
- RETSAT associates with DDX39B to promote fork restarting and resistance to gemcitabine based chemotherapy in pancreatic ductal adenocarcinoma. (PMID:36109793)
- Intestinal retinol saturase is implicated in the development of obesity and epithelial homeostasis upon injury. (PMID:38895981)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | retsat.2 | ENSDARG00000018600 |
| danio_rerio | retsat.1 | ENSDARG00000070140 |
| mus_musculus | Retsat | ENSMUSG00000056666 |
| rattus_norvegicus | Retsat | ENSRNOG00000014090 |
Paralogs (2): PYROXD2 (ENSG00000119943), BLOC1S2 (ENSG00000196072)
Protein
Protein identifiers
All-trans-retinol 13,14-reductase — Q6NUM9 (reviewed: Q6NUM9)
Alternative names: All-trans-13,14-dihydroretinol saturase, PPAR-alpha-regulated and starvation-induced gene protein
All UniProt accessions (5): Q6NUM9, H0YGU3, H7BZ16, H7BZ81, H7C3J0
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the saturation of all-trans-retinol to all-trans-13,14-dihydroretinol. Does not exhibit any activity toward all-trans-retinoic acid, nor 9-cis, 11-cis or 13-cis-retinol isomers. May play a role in the metabolism of vitamin A. Independently of retinol conversion, may regulate liver metabolism upstream of MLXIPL/ChREBP. May play a role in adipocyte differentiation.
Subcellular location. Endoplasmic reticulum membrane.
Tissue specificity. Expressed in liver; expression positively correlates with obesity and liver steatosis. Expressed in adipose tissue; expression tends to be decreased in obese versus lean individuals.
Similarity. Belongs to the carotenoid/retinoid oxidoreductase family. CrtISO subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6NUM9-1 | 1 | yes |
| Q6NUM9-2 | 2 |
RefSeq proteins (1): NP_060220* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR036188 | FAD/NAD-bd_sf | Homologous_superfamily |
| IPR052206 | Retinol_saturase | Family |
Pfam: PF13450
Catalyzed reactions (Rhea), 1 shown:
- all-trans-13,14-dihydroretinol + A = all-trans-retinol + AH2 (RHEA:19193)
UniProt features (10 total): sequence variant 3, sequence conflict 3, splice variant 2, signal peptide 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6NUM9-F1 | 95.17 | 0.90 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-975634 | Retinoid metabolism and transport |
MSigDB gene sets: 161 (showing top):
GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_RETINOL_METABOLIC_PROCESS, ICHIBA_GRAFT_VERSUS_HOST_DISEASE_35D_DN, GOBP_LIPID_METABOLIC_PROCESS, CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN, chr2p11, MARIADASON_REGULATED_BY_HISTONE_ACETYLATION_UP, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR, WENG_POR_TARGETS_GLOBAL_DN, WENG_POR_DOSAGE, GOBP_ISOPRENOID_METABOLIC_PROCESS, GOBP_PRIMARY_ALCOHOL_METABOLIC_PROCESS
GO Biological Process (3): retinol metabolic process (GO:0042572), retinoid metabolic process (GO:0001523), lipid metabolic process (GO:0006629)
GO Molecular Function (2): all-trans-retinol 13,14-reductase activity (GO:0051786), oxidoreductase activity (GO:0016491)
GO Cellular Component (5): nuclear outer membrane (GO:0005640), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), nuclear membrane (GO:0031965), endoplasmic reticulum (GO:0005783)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Visual phototransduction | 1 |
| Metabolism of fat-soluble vitamins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nuclear outer membrane-endoplasmic reticulum membrane network | 2 |
| organelle membrane | 2 |
| retinoid metabolic process | 1 |
| primary alcohol metabolic process | 1 |
| hormone metabolic process | 1 |
| olefinic compound metabolic process | 1 |
| diterpenoid metabolic process | 1 |
| primary metabolic process | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors | 1 |
| retinol metabolic process | 1 |
| catalytic activity | 1 |
| nuclear membrane | 1 |
| organelle outer membrane | 1 |
| endoplasmic reticulum subcompartment | 1 |
| cellular anatomical structure | 1 |
| nucleus | 1 |
| nuclear envelope | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
1493 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RETSAT | BCO1 | Q9HAY6 | 539 |
| RETSAT | LRAT | O95237 | 518 |
| RETSAT | BCO2 | Q9BYV7 | 439 |
| RETSAT | FAXDC2 | Q96IV6 | 419 |
| RETSAT | ELMOD3 | Q96FG2 | 401 |
| RETSAT | HSD17B10 | Q99714 | 399 |
| RETSAT | IDI1 | Q13907 | 399 |
| RETSAT | DHRS4 | Q9BTZ2 | 397 |
| RETSAT | FDFT1 | P37268 | 383 |
| RETSAT | AASDH | Q4L235 | 375 |
| RETSAT | GGPS1 | O95749 | 374 |
| RETSAT | ASGR2 | P07307 | 372 |
| RETSAT | SORD | Q00796 | 367 |
| RETSAT | MVD | P53602 | 363 |
| RETSAT | CREG1 | O75629 | 362 |
IntAct
135 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| ANKRD46 | ATRN | psi-mi:“MI:0914”(association) | 0.640 |
| GDPD5 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| SPINT2 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| EVA1C | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| KCNS3 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PCDHB16 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| SCN3B | ABCC5 | psi-mi:“MI:0914”(association) | 0.530 |
| IL9R | RETSAT | psi-mi:“MI:0914”(association) | 0.530 |
| CXCR4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| LRRTM1 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| EVA1C | STK25 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC31A1 | PRORP | psi-mi:“MI:0914”(association) | 0.530 |
| ESYT2 | psi-mi:“MI:0914”(association) | 0.350 | |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRTM1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHGB4 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMPRSS3 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.350 |
| TPRA1 | BMPR1B | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (167): RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS), RETSAT (Affinity Capture-MS)
ESM2 similar proteins: A0JPE9, A2AJL3, A2VD33, O46504, O75191, P12276, P12785, P13439, P17256, P19096, P31754, Q08D86, Q0IH28, Q0VFE7, Q3MIF4, Q3SYZ6, Q3TNA1, Q4V831, Q4V9P6, Q503J2, Q566S6, Q5M7T9, Q5R979, Q5RFE6, Q5U5V2, Q5XH07, Q5XIG6, Q5ZMJ4, Q64FG0, Q68FH4, Q6DCD1, Q6DH69, Q6GMR7, Q6GP95, Q6NUM9, Q6NUW9, Q6ZS86, Q71SP7, Q7TSQ8, Q80SY6
Diamond homologs: A0A0A1GKA2, A0B880, A0R4S9, A1RW13, A3CXS4, A3MWF6, A4FWG7, A4WKY7, A4YIV7, A6UPZ7, A6UV59, A6VGT9, A7EWL8, A7HMY3, A8NSD1, A8ZVP3, A9A9W1, A9RHW6, A9RHX1, A9SMC8, A9SME1, B0R884, B1YDX0, C3MQY1, C3MWW9, C3N6N6, C3N749, C3NGI6, C4KIA7, C4XIR5, C5X2M4, C5XNN6, D4GSS5, F6BCS4, F6H7K5, F6H9A9, G5EAZ2, H8ZPX1, O27657, O29556
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 154 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| R-HSA-425393 | 9 | 12.0× | 6e-06 |
| SLC-mediated transmembrane transport | 14 | 8.5× | 3e-07 |
| Transport of small molecules | 18 | 4.7× | 6e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| potassium ion import across plasma membrane | 5 | 14.3× | 3e-03 |
| chloride transmembrane transport | 6 | 11.1× | 2e-03 |
| monoatomic ion transport | 8 | 9.8× | 4e-04 |
| potassium ion transmembrane transport | 9 | 9.6× | 2e-04 |
| transmembrane transport | 7 | 9.2× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
145 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 107 |
| Likely benign | 8 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1763 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:85344048:T:TA | donor_gain | 1.0000 |
| 2:85344592:A:AC | donor_gain | 1.0000 |
| 2:85344592:ACG:A | donor_gain | 1.0000 |
| 2:85344593:C:CC | donor_gain | 1.0000 |
| 2:85344593:CG:C | donor_gain | 1.0000 |
| 2:85344593:CGC:C | donor_gain | 1.0000 |
| 2:85346092:CAC:C | acceptor_gain | 1.0000 |
| 2:85346095:C:CC | acceptor_gain | 1.0000 |
| 2:85349579:CAC:C | acceptor_gain | 1.0000 |
| 2:85350779:CCT:C | donor_gain | 1.0000 |
| 2:85350781:TTA:T | donor_gain | 1.0000 |
| 2:85350797:A:AC | donor_gain | 1.0000 |
| 2:85350798:C:CC | donor_gain | 1.0000 |
| 2:85350814:T:A | donor_gain | 1.0000 |
| 2:85350817:T:TA | donor_gain | 1.0000 |
| 2:85351017:GATTC:G | acceptor_gain | 1.0000 |
| 2:85351018:ATTC:A | acceptor_gain | 1.0000 |
| 2:85351019:TTC:T | acceptor_gain | 1.0000 |
| 2:85351019:TTCCT:T | acceptor_loss | 1.0000 |
| 2:85351020:TC:T | acceptor_gain | 1.0000 |
| 2:85351021:CC:C | acceptor_gain | 1.0000 |
| 2:85351022:C:CC | acceptor_gain | 1.0000 |
| 2:85351674:CCTTA:C | donor_loss | 1.0000 |
| 2:85351675:CTTAC:C | donor_loss | 1.0000 |
| 2:85351676:TTAC:T | donor_loss | 1.0000 |
| 2:85351677:TA:T | donor_loss | 1.0000 |
| 2:85351678:A:C | donor_loss | 1.0000 |
| 2:85351679:C:A | donor_loss | 1.0000 |
| 2:85351859:AAAG:A | acceptor_gain | 1.0000 |
| 2:85351863:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
3943 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:85351810:A:C | S75R | 0.991 |
| 2:85351810:A:T | S75R | 0.991 |
| 2:85351812:T:G | S75R | 0.991 |
| 2:85351687:A:C | F116L | 0.987 |
| 2:85351687:A:T | F116L | 0.987 |
| 2:85351689:A:G | F116L | 0.987 |
| 2:85350941:A:G | W146R | 0.986 |
| 2:85350941:A:T | W146R | 0.986 |
| 2:85350825:A:C | F184L | 0.985 |
| 2:85350825:A:T | F184L | 0.985 |
| 2:85350827:A:G | F184L | 0.985 |
| 2:85344629:G:C | N407K | 0.984 |
| 2:85344629:G:T | N407K | 0.984 |
| 2:85344677:G:C | F391L | 0.983 |
| 2:85344677:G:T | F391L | 0.983 |
| 2:85344679:A:G | F391L | 0.983 |
| 2:85343360:C:T | G572E | 0.982 |
| 2:85351016:G:C | H121D | 0.981 |
| 2:85351708:A:C | F109L | 0.981 |
| 2:85351708:A:T | F109L | 0.981 |
| 2:85351710:A:G | F109L | 0.981 |
| 2:85351021:C:T | G119E | 0.980 |
| 2:85351745:T:A | E97V | 0.978 |
| 2:85350917:C:G | D154H | 0.977 |
| 2:85343376:C:G | D567H | 0.976 |
| 2:85350050:G:C | F263L | 0.975 |
| 2:85350050:G:T | F263L | 0.975 |
| 2:85350052:A:G | F263L | 0.975 |
| 2:85343381:C:A | G565V | 0.974 |
| 2:85351751:A:T | V95E | 0.974 |
dbSNP variants (sampled 300 via entrez): RS1000450698 (2:85351263 C>T), RS1000803859 (2:85347613 C>T), RS1000923527 (2:85346561 T>C), RS1001519607 (2:85346880 C>A), RS1001950471 (2:85347193 C>A), RS1002044230 (2:85342023 A>C), RS1002406858 (2:85354426 T>C), RS1002418200 (2:85354054 C>A), RS1002610473 (2:85352255 A>G), RS1003751454 (2:85350391 T>A), RS1003856732 (2:85354668 A>G,T), RS1003960525 (2:85341781 G>A), RS1004027782 (2:85344859 G>T), RS1004313663 (2:85348481 A>C), RS1004382356 (2:85350633 G>A,T)
Disease associations
OMIM: gene MIM:617597 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | affects cotreatment, increases expression, affects expression | 5 |
| Benzo(a)pyrene | decreases methylation, increases expression | 4 |
| Valproic Acid | affects expression, increases expression | 3 |
| sodium arsenite | decreases expression, increases abundance | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 2 |
| Dactinomycin | affects cotreatment, increases expression, increases secretion | 2 |
| Dexamethasone | increases expression, affects cotreatment, decreases expression | 2 |
| Methyl Methanesulfonate | increases expression | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | affects cotreatment, decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| ciglitazone | affects binding, increases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| K 7174 | increases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression, increases secretion | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2J2 | HAP1 RETSAT (-) 1 | Cancer cell line | Male |
| CVCL_E2J3 | HAP1 RETSAT (-) 2 | Cancer cell line | Male |
| CVCL_E2J4 | HAP1 RETSAT (-) 3 | Cancer cell line | Male |
| CVCL_E2J5 | HAP1 RETSAT (-) 4 | Cancer cell line | Male |
| CVCL_E2J6 | HAP1 RETSAT (-) 5 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.