RGPD4-DT

Summary

RGPD4-DT (RGPD4 divergent transcript, HGNC:49273) is a long non-coding RNA gene on chromosome 2q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49273
Approved symbol	RGPD4-DT
Name	RGPD4 divergent transcript
Location	2q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230651
Ensembl biotype	lncRNA
Entrez	729121
RNAcentral	URS000075E4D9 — lncRNA, 1674 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000417284, ENST00000457647, ENST00000593452, ENST00000594764, ENST00000609354, ENST00000609972, ENST00000728911, ENST00000728912, ENST00000728913, ENST00000728914

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417284 — 4 exons

Exon	Start	End
ENSE00001675566	107824561	107824743
ENSE00001717966	107825669	107826126
ENSE00004055867	107823977	107824185
ENSE00004055868	107826681	107826829

Expression profiles

Bgee: expression breadth ubiquitous, 152 present calls, max score 88.06.

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	88.06	gold quality
right testis	UBERON:0004534	88.06	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.79	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.60	gold quality
sural nerve	UBERON:0015488	85.82	gold quality
testis	UBERON:0000473	85.06	gold quality
sperm	CL:0000019	77.00	silver quality
ventricular zone	UBERON:0003053	70.10	gold quality
monocyte	CL:0000576	66.94	gold quality
cortical plate	UBERON:0005343	66.64	gold quality
leukocyte	CL:0000738	66.27	gold quality
calcaneal tendon	UBERON:0003701	66.05	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.89	gold quality
gall bladder	UBERON:0002110	63.05	gold quality
vermiform appendix	UBERON:0001154	62.86	gold quality
lower esophagus mucosa	UBERON:0035834	62.38	gold quality
ganglionic eminence	UBERON:0004023	61.90	gold quality
adrenal tissue	UBERON:0018303	61.62	gold quality
granulocyte	CL:0000094	59.94	gold quality
muscle of leg	UBERON:0001383	58.24	gold quality
right lobe of liver	UBERON:0001114	58.16	gold quality
smooth muscle tissue	UBERON:0001135	57.63	gold quality
gastrocnemius	UBERON:0001388	57.27	gold quality
islet of Langerhans	UBERON:0000006	57.11	gold quality
anterior cingulate cortex	UBERON:0009835	57.05	gold quality
buccal mucosa cell	CL:0002336	56.92	gold quality
blood	UBERON:0000178	56.81	gold quality
amygdala	UBERON:0001876	56.50	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.33	gold quality
tendon	UBERON:0000043	56.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.