RGR
geneOn this page
Also known as RP44
Summary
RGR (retinal G protein coupled receptor, HGNC:9990) is a protein-coding gene on chromosome 10q23.1, encoding RPE-retinal G protein-coupled receptor (P47804). Receptor for all-trans- and 11-cis-retinal.
This gene encodes a putative retinal G-protein coupled receptor. The gene is a member of the opsin subfamily of the 7 transmembrane, G-protein coupled receptor 1 family. Like other opsins which bind retinaldehyde, it contains a conserved lysine residue in the seventh transmembrane domain. The protein acts as a photoisomerase to catalyze the conversion of all-trans-retinal to 11-cis-retinal. The reverse isomerization occurs with rhodopsin in retinal photoreceptor cells. The protein is exclusively expressed in tissue adjacent to retinal photoreceptor cells, the retinal pigment epithelium and Mueller cells. This gene may be associated with autosomal recessive and autosomal dominant retinitis pigmentosa (arRP and adRP, respectively). Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 5995 — RefSeq curated summary.
At a glance
- Gene–disease (curated): retinitis pigmentosa (Supportive, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 329 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 36
- MANE Select transcript:
NM_001012720
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9990 |
| Approved symbol | RGR |
| Name | retinal G protein coupled receptor |
| Location | 10q23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RP44 |
| Ensembl gene | ENSG00000148604 |
| Ensembl biotype | protein_coding |
| OMIM | 600342 |
| Entrez | 5995 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 9 protein_coding, 5 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000358110, ENST00000359452, ENST00000372092, ENST00000469446, ENST00000478727, ENST00000479725, ENST00000483660, ENST00000483744, ENST00000483771, ENST00000497161, ENST00000650682, ENST00000650774, ENST00000651155, ENST00000651237, ENST00000652073, ENST00000652092, ENST00000652122, ENST00000652310
RefSeq mRNA: 3 — MANE Select: NM_001012720
NM_001012720, NM_001012722, NM_002921
CCDS: CCDS41543, CCDS7374, CCDS91288
Canonical transcript exons
ENST00000652092 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001890388 | 84258508 | 84259960 |
| ENSE00003487592 | 84247591 | 84247747 |
| ENSE00003567569 | 84248922 | 84249043 |
| ENSE00003593197 | 84257893 | 84258006 |
| ENSE00003595739 | 84254326 | 84254443 |
| ENSE00003609209 | 84252857 | 84253010 |
| ENSE00003613609 | 84245053 | 84245169 |
Expression profiles
Bgee: expression breadth ubiquitous, 143 present calls, max score 98.87.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.8858 / max 2017.7100, expressed in 102 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 105939 | 1.8338 | 96 |
| 105937 | 0.0361 | 15 |
| 105938 | 0.0110 | 4 |
| 105936 | 0.0049 | 2 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 98.87 | gold quality |
| frontal pole | UBERON:0002795 | 85.25 | silver quality |
| paraflocculus | UBERON:0005351 | 82.01 | silver quality |
| middle frontal gyrus | UBERON:0002702 | 81.84 | silver quality |
| mucosa of stomach | UBERON:0001199 | 80.53 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.87 | gold quality |
| endometrium epithelium | UBERON:0004811 | 79.33 | gold quality |
| triceps brachii | UBERON:0001509 | 77.49 | gold quality |
| gluteal muscle | UBERON:0002000 | 76.88 | gold quality |
| cingulate cortex | UBERON:0003027 | 76.01 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 75.88 | gold quality |
| nucleus accumbens | UBERON:0001882 | 74.66 | gold quality |
| caudate nucleus | UBERON:0001873 | 74.52 | gold quality |
| right frontal lobe | UBERON:0002810 | 73.93 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 73.82 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 73.75 | gold quality |
| amygdala | UBERON:0001876 | 73.62 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 73.22 | gold quality |
| prefrontal cortex | UBERON:0000451 | 73.16 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 73.07 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 72.49 | gold quality |
| cerebellar vermis | UBERON:0004720 | 71.87 | gold quality |
| quadriceps femoris | UBERON:0001377 | 71.51 | gold quality |
| neocortex | UBERON:0001950 | 71.47 | gold quality |
| vastus lateralis | UBERON:0001379 | 71.43 | gold quality |
| frontal cortex | UBERON:0001870 | 71.13 | gold quality |
| olfactory bulb | UBERON:0002264 | 70.48 | gold quality |
| telencephalon | UBERON:0001893 | 70.41 | gold quality |
| temporal lobe | UBERON:0001871 | 70.40 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 70.31 | silver quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-137537 | yes | 3381.58 |
| E-GEOD-98556 | yes | 1694.80 |
| E-MTAB-7316 | yes | 39.39 |
| E-GEOD-135922 | yes | 20.25 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MEF2C, NR1D1, NR2C1, NR2E3, OTX2, SOX9
miRNA regulators (miRDB)
48 targeting RGR, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-6744-5P | 99.93 | 66.82 | 748 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-4658 | 99.77 | 64.94 | 514 |
| HSA-MIR-6790-5P | 99.77 | 65.24 | 505 |
| HSA-MIR-1255A | 99.74 | 68.09 | 744 |
| HSA-MIR-1255B-5P | 99.74 | 68.16 | 741 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-3177-5P | 99.65 | 70.38 | 1174 |
| HSA-MIR-7156-5P | 99.64 | 68.81 | 1369 |
| HSA-MIR-6752-5P | 99.59 | 67.32 | 1243 |
| HSA-MIR-4273 | 99.45 | 67.93 | 1206 |
| HSA-MIR-3911 | 99.38 | 66.95 | 1087 |
| HSA-MIR-4506 | 99.34 | 67.47 | 526 |
| HSA-MIR-888-5P | 99.30 | 70.15 | 1855 |
| HSA-MIR-149-5P | 99.25 | 67.16 | 1315 |
| HSA-MIR-4738-3P | 98.98 | 67.98 | 1846 |
Literature-anchored findings (GeneRIF, showing 14)
- E150K opsin is partially colocalized with the cis/medial Golgi compartment but not with the trans-Golgi network; results are consistent with recessive pattern of inheritance; retinal degeneration results from deficient export of opsin from the Golgi (PMID:16737970)
- These results indicate that after exon-skipping RGR splice isoform (RGR-d) is synthesized, the RGR-d epitope is released at the basal surface of the retinal pigment epithelium and deposited into Bruch’s membrane in human eyes throughout adult life. (PMID:17679941)
- RGR-opsin mediates light-dependent translocation of all-trans-retinyl esters from a storage pool in lipid droplets to an “isomerase pool” in membranes of the endoplasmic reticulum. (PMID:18474598)
- the exon-skipping variant of RGR (RGR-d) is found in extracellular deposits;at the base of early-stage drusen mounds in the older donors and may precede the formation of these drusen (PMID:19450444)
- It is likely that mutations in RGR, RBP3, and possibly RBP1 occur rarely in inherited retinal dystrophies. (PMID:21067480)
- conclude that the ability of hRgr to activate both Ral and Ras is responsible for its transformation-inducing phenotype and it could be an important contributor in the development of some T-cell malignancies (PMID:21441953)
- study to systemically analyze the potential role of variants of RGR in retinal diseases results of the suggested that the heterozygous truncation variants in RGR were less likely to be pathogenic (PMID:27748892)
- The results indicate that the cone photoreceptors of humans and cattle express a nonvisual opsin of the Go/RGR or tetraopsin group. (PMID:30034210)
- The clinical data suggest a variable and slow degeneration of the RPE. A shared chromosomal segment surrounding the RGR gene suggests a single ancestral mutational event underlying all three families. (PMID:30347075)
- Human RGR Gene and Associated Features of Age-Related Macular Degeneration in Models of Retina-Choriocapillaris Atrophy. (PMID:34022179)
- A rare case of RGR/CDHR1 haplotype identified in Bulgarian patient with cone-rod dystrophy. (PMID:34229535)
- Proteopathy Linked to Exon-Skipping Isoform of RGR-Opsin Contributes to the Pathogenesis of Age-Related Macular Degeneration. (PMID:37883094)
- A pan-cancer analysis of RGR opsin expression and its downregulation associated with poor prognosis in glioma. (PMID:38053380)
- Expression Analysis of Retinal G Protein-coupled Receptor and its Correlation with Regulation of the Balance between Proliferation and Aberrant Differentiation in Cutaneous Squamous Cell Carcinoma. (PMID:38299232)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | rgra | ENSDARG00000054890 |
| danio_rerio | rgrb | ENSDARG00000098724 |
| mus_musculus | Rgr | ENSMUSG00000021804 |
| rattus_norvegicus | Rgr | ENSRNOG00000012396 |
| caenorhabditis_elegans | WBGENE00011578 |
Paralogs (23): CCR6 (ENSG00000112486), CCRL2 (ENSG00000121797), CCR2 (ENSG00000121807), CXCR4 (ENSG00000121966), CCR7 (ENSG00000126353), ACKR4 (ENSG00000129048), ACKR3 (ENSG00000144476), ACKR2 (ENSG00000144648), CXCR5 (ENSG00000160683), CCR5 (ENSG00000160791), CXCR1 (ENSG00000163464), CCR1 (ENSG00000163823), CX3CR1 (ENSG00000168329), CXCR6 (ENSG00000172215), XCR1 (ENSG00000173578), CCR9 (ENSG00000173585), CCR8 (ENSG00000179934), CXCR2 (ENSG00000180871), GALR2 (ENSG00000182687), CCR3 (ENSG00000183625), CCR4 (ENSG00000183813), CCR10 (ENSG00000184451), CXCR3 (ENSG00000186810)
Protein
Protein identifiers
RPE-retinal G protein-coupled receptor — P47804 (reviewed: P47804)
All UniProt accessions (12): P47804, A0A0S2Z494, A0A0S2Z498, A0A494BZT6, A0A494C063, A0A494C0U5, A0A494C170, A0A494C187, A0A494C1A1, A0A494C1E7, A0A494C1G9, A0A494C1U1
UniProt curated annotations — full annotation on UniProt →
Function. Receptor for all-trans- and 11-cis-retinal. Binds preferentially to the former and may catalyze the isomerization of the chromophore by a retinochrome-like mechanism.
Subcellular location. Membrane.
Tissue specificity. Preferentially expressed at high levels in the retinal pigment epithelium (RPE) and Mueller cells of the neural retina.
Post-translational modifications. Covalently binds all-trans- and 11-cis-retinal.
Disease relevance. Retinitis pigmentosa 44 (RP44) [MIM:613769] A retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P47804-1 | 1, Short | yes |
| P47804-2 | 2, Long | |
| P47804-3 | 3 |
RefSeq proteins (3): NP_001012738, NP_001012740, NP_002912 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000276 | GPCR_Rhodpsn | Family |
| IPR001793 | RPE_GPCR | Family |
| IPR017452 | GPCR_Rhodpsn_7TM | Domain |
| IPR027430 | Retinal_BS | Binding_site |
| IPR050125 | GPCR_opsins | Family |
Pfam: PF00001
UniProt features (26 total): topological domain 8, transmembrane region 7, sequence variant 5, splice variant 2, chain 1, modified residue 1, glycosylation site 1, disulfide bond 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P47804-F1 | 90.04 | 0.78 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 255
Disulfide bonds (1): 88–162
Glycosylation sites (1): 172
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-418594 | G alpha (i) signalling events |
| R-HSA-419771 | Opsins |
MSigDB gene sets: 156 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_DN, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS, GOBP_PHOTOTRANSDUCTION, CAGCTG_AP4_Q5, MODULE_289, GOBP_SENSORY_PERCEPTION_OF_LIGHT_STIMULUS, GOBP_RESPONSE_TO_RADIATION, MODULE_123, GOBP_DETECTION_OF_LIGHT_STIMULUS, GOBP_RESPONSE_TO_ABIOTIC_STIMULUS, GOBP_DETECTION_OF_ABIOTIC_STIMULUS, MODULE_113, GOBP_DETECTION_OF_STIMULUS, GOBP_CELLULAR_RESPONSE_TO_RADIATION, GOBP_SENSORY_PERCEPTION
GO Biological Process (6): G protein-coupled receptor signaling pathway (GO:0007186), visual perception (GO:0007601), phototransduction (GO:0007602), cellular response to light stimulus (GO:0071482), signal transduction (GO:0007165), detection of visible light (GO:0009584)
GO Molecular Function (4): G protein-coupled receptor activity (GO:0004930), G protein-coupled photoreceptor activity (GO:0008020), protein binding (GO:0005515), photoreceptor activity (GO:0009881)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| GPCR downstream signalling | 1 |
| Class A/1 (Rhodopsin-like receptors) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| G protein-coupled receptor activity | 2 |
| signal transduction | 2 |
| detection of light stimulus | 2 |
| sensory perception of light stimulus | 1 |
| response to light stimulus | 1 |
| cellular response to radiation | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| transmembrane signaling receptor activity | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| detection of visible light | 1 |
| photoreceptor activity | 1 |
| binding | 1 |
| signaling receptor activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
470 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| RGR | RDH10 | Q8IZV5 | 971 |
| RGR | RDH5 | Q92781 | 871 |
| RGR | RPE65 | Q16518 | 685 |
| RGR | RLBP1 | P12271 | 682 |
| RGR | RBP3 | P10745 | 622 |
| RGR | LRAT | O95237 | 593 |
| RGR | CERKL | Q49MI3 | 575 |
| RGR | RBP1 | P09455 | 545 |
| RGR | SDR9C7 | Q8NEX9 | 521 |
| RGR | SORD | Q00796 | 507 |
| RGR | RDH12 | Q96NR8 | 485 |
| RGR | CNGA1 | P29973 | 484 |
| RGR | CNGB1 | Q14028 | 472 |
| RGR | OTOP3 | Q7RTS5 | 471 |
| RGR | ABCA4 | P78363 | 470 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RGR | KIFBP | psi-mi:“MI:0915”(physical association) | 0.510 |
| RGR | ADRB2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RGR | CCR2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RGR | F2RL1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RGR | DUSP14 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (11): KIAA1279 (Two-hybrid), KIAA1279 (Affinity Capture-Western), RGR (Two-hybrid), RGR (Two-hybrid), RGR (Two-hybrid), RGR (Two-hybrid), RGR (Two-hybrid), DUSP14 (Affinity Capture-MS), LRRC15 (Affinity Capture-MS), SELENBP1 (Affinity Capture-MS), HIST2H2AC (Affinity Capture-MS)
ESM2 similar proteins: O88855, O95136, O97666, P11617, P29274, P29275, P29276, P30987, P34972, P35414, P47752, P47803, P47804, P47936, P49220, P49684, P52592, P97583, Q05B81, Q0Q460, Q1LZD0, Q32ZE2, Q5E9H8, Q60613, Q60614, Q6PI62, Q6TLI7, Q6U736, Q6VZZ7, Q6W3F4, Q7TQP3, Q864F6, Q864H0, Q8MJV2, Q8TDV5, Q8VIH9, Q95125, Q95JG1, Q95MG6, Q95MH6
Diamond homologs: O01668, O02464, O02465, O08892, O15973, O16005, O16017, O16018, O16019, O16020, O18312, O18315, O18481, O18485, O18486, O19012, O19014, O19032, O19054, O57422, O61303, O77408, O77713, O77721, O93441, O96107, P04950, P06002, P08099, P08255, P08913, P09241, P0DQD5, P11614, P17646, P18089, P22269, P22329, P24603, P25116
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
329 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 188 |
| Likely benign | 118 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 438065 | NM_001012720.2(RGR):c.*74dup | Pathogenic |
| 802599 | NM_001012720.2(RGR):c.820del (p.Arg274fs) | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
1883 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:84247680:A:C | S57R | 0.992 |
| 10:84247682:C:A | S57R | 0.992 |
| 10:84247682:C:G | S57R | 0.992 |
| 10:84247707:A:C | S66R | 0.981 |
| 10:84247709:C:A | S66R | 0.981 |
| 10:84247709:C:G | S66R | 0.981 |
| 10:84248989:A:C | S102R | 0.980 |
| 10:84248991:C:A | S102R | 0.980 |
| 10:84248991:C:G | S102R | 0.980 |
| 10:84248928:G:C | W81C | 0.978 |
| 10:84248928:G:T | W81C | 0.978 |
| 10:84248926:T:A | W81R | 0.974 |
| 10:84248926:T:C | W81R | 0.974 |
| 10:84252946:T:A | W150R | 0.972 |
| 10:84252946:T:C | W150R | 0.972 |
| 10:84252904:T:A | W136R | 0.969 |
| 10:84252904:T:C | W136R | 0.969 |
| 10:84252922:T:A | W142R | 0.969 |
| 10:84252922:T:C | W142R | 0.969 |
| 10:84254336:A:C | S175R | 0.969 |
| 10:84254338:C:A | S175R | 0.969 |
| 10:84254338:C:G | S175R | 0.969 |
| 10:84247737:A:C | S76R | 0.965 |
| 10:84247739:C:A | S76R | 0.965 |
| 10:84247739:C:G | S76R | 0.965 |
| 10:84254339:T:C | F176L | 0.962 |
| 10:84254341:C:A | F176L | 0.962 |
| 10:84254341:C:G | F176L | 0.962 |
| 10:84248998:A:C | S105R | 0.961 |
| 10:84249000:C:A | S105R | 0.961 |
dbSNP variants (sampled 300 via entrez): RS1000087333 (10:84251304 G>A), RS1000121511 (10:84251571 G>A), RS1000164530 (10:84247245 G>A,T), RS1000439895 (10:84258955 G>A), RS1000704943 (10:84247661 C>T), RS1000999204 (10:84257176 G>A), RS1001088292 (10:84252024 A>T), RS1001261539 (10:84257415 C>T), RS1001309844 (10:84246446 G>A), RS1001496871 (10:84256788 A>G), RS1001823100 (10:84256606 G>A), RS1001955147 (10:84250552 A>C), RS1002090922 (10:84250912 A>T), RS1002245848 (10:84244904 C>G,T), RS1002358142 (10:84256695 C>T)
Disease associations
OMIM: gene MIM:600342 | disease phenotypes: MIM:268000, MIM:613769
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| retinitis pigmentosa | Supportive | Autosomal dominant |
| retinitis pigmentosa 44 | Limited | Semidominant |
Mondo (5): inherited retinal dystrophy (MONDO:0019118), retinitis pigmentosa (MONDO:0019200), retinitis pigmentosa 44 (MONDO:0013414), optic atrophy (MONDO:0003608), cone dystrophy (MONDO:0000455)
Orphanet (3): OBSOLETE: Inherited retinal disorder (Orphanet:71862), Retinitis pigmentosa (Orphanet:791), Progressive cone dystrophy (Orphanet:1871)
HPO phenotypes
36 total (30 of 36 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000543 | Optic disc pallor |
| HP:0000546 | Retinal degeneration |
| HP:0000551 | Color vision defect |
| HP:0000563 | Keratoconus |
| HP:0000602 | Ophthalmoplegia |
| HP:0000613 | Photophobia |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000654 | Decreased light- and dark-adapted electroretinogram amplitude |
| HP:0000662 | Nyctalopia |
| HP:0000842 | Hyperinsulinemia |
| HP:0001105 | Retinal atrophy |
| HP:0001133 | Constriction of peripheral visual field |
| HP:0007663 | Reduced visual acuity |
| HP:0007675 | Progressive night blindness |
| HP:0007703 | Abnormal retinal pigmentation |
| HP:0007737 | Spicular pigmentation of the retina |
| HP:0007787 | Posterior subcapsular cataract |
| HP:0007843 | Attenuation of retinal blood vessels |
| HP:0007994 | Peripheral visual field loss |
| HP:0008046 | Abnormal retinal vascular morphology |
GWAS associations
0 associations (top):
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000077765 | Cone Dystrophy | C11.270.151; C11.768.216 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
5 total (human), top 5 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Carmustine | decreases expression | 1 |
| Plant Extracts | decreases expression | 1 |
Clinical trials (associated diseases)
259 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT00100230 | PHASE2 | COMPLETED | DHA and X-Linked Retinitis Pigmentosa |
| NCT00447980 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Participants With Early Stage Retinitis Pigmentosa |
| NCT00447993 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Patients With Late Stage Retinitis Pigmentosa |
| NCT01233609 | PHASE2 | COMPLETED | Trial of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01399515 | PHASE2 | COMPLETED | Efficacy and Safety of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT01560715 | PHASE2 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
| NCT02609165 | PHASE2 | COMPLETED | Nerve Growth Factor Eye Drops Treatment in Patients With Retinitis Pigmentosa and Cystoid Macular Edema |
| NCT02661711 | PHASE2 | COMPLETED | Aflibercept for Macular Oedema With Underlying Retinitis Pigmentosa (AMOUR) Study |
| NCT02804360 | PHASE2 | UNKNOWN | Intravitreal Dexamethasone Implant in Retinitis Pigmentosa-related Macular Edema- a Retrospective Study |
| NCT02837640 | PHASE2 | UNKNOWN | Studying a Potential Protective Effect of L-Dopa on Retinitis Pigmentosa |
| NCT03073733 | PHASE2 | COMPLETED | Safety and Efficacy of Intravitreal Injection of Human Retinal Progenitor Cells in Adults With Retinitis Pigmentosa |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04356716 | PHASE2 | COMPLETED | Sildenafil for Treatment of Choroidal Ischemia |
| NCT04604899 | PHASE2 | COMPLETED | Safety of Repeat Intravitreal Injection of Human Retinal Progenitor Cells (jCell) in Adult Subjects With Retinitis Pigmentosa |
| NCT04763369 | PHASE2 | UNKNOWN | Investigation of Therapeutic Efficacy and Safety of UMSCs for the Management of Retinitis Pigmentosa (RP) |
| NCT04864496 | PHASE2 | UNKNOWN | Effects of Treatment With N- Acetylcysteine on Visual Outcomes in Patients With Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05085964 | PHASE2 | TERMINATED | An Open-Label Extension Study to Evaluate Safety & Tolerability of QR-421a in Subjects With Retinitis Pigmentosa |
| NCT05392179 | PHASE2 | COMPLETED | A Study in Subjects With Retinitis Pigmentosa |
| NCT06627179 | PHASE2 | RECRUITING | Study to Evaluate Ultevursen in Subjects With Retinitis Pigmentosa (RP) Due to Mutations in Exon 13 of the USH2A Gene |
| NCT06628947 | PHASE2 | RECRUITING | A Phase II Study of Intravitreal KIO-301 in Patients With Late-stage Retinitis Pigmentosa |
| NCT06912633 | PHASE2 | RECRUITING | Safety of a Single, Intravitreal Injection of 6.0M jCell (Famzeretcel) in Retinitis Pigmentosa (RP) |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT00063765 | PHASE1 | COMPLETED | Evaluation of Safety of Ciliary Neurotrophic Factor Implants in the Eye |
| NCT00065455 | PHASE1 | COMPLETED | Investigating the Effect of Vitamin A Supplementation on Retinitis Pigmentosa |
| NCT00458575 | PHASE1 | TERMINATED | A Study to Evaluate the Safety of CNTO 2476 in Patients With Advanced Retinitis Pigmentosa |
Related Atlas pages
- Associated diseases: retinitis pigmentosa 44, retinitis pigmentosa 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cone dystrophy, retinitis pigmentosa, retinitis pigmentosa 44